data_2KB2 # _model_server_result.job_id zrNMwzlBKup1NexhPxxobA _model_server_result.datetime_utc '2024-11-05 00:20:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":149}' # _entry.id 2KB2 # _exptl.entry_id 2KB2 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 2KB2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id FMN _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 149 _pdbx_nonpoly_scheme.auth_seq_num 149 _pdbx_nonpoly_scheme.pdb_mon_id FMN _pdbx_nonpoly_scheme.auth_mon_id FMN _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . B 2 3.883 10.709 -0.494 1 35.81 ? N1 FMN 149 A 1 HETATM 2 C C2 FMN . . . B 2 4.952 9.848 -0.545 1 36.65 ? C2 FMN 149 A 1 HETATM 3 O O2 FMN . . . B 2 6.088 10.206 -0.689 1 38.2 ? O2 FMN 149 A 1 HETATM 4 N N3 FMN . . . B 2 4.719 8.429 -0.423 1 36.21 ? N3 FMN 149 A 1 HETATM 5 C C4 FMN . . . B 2 3.492 7.865 -0.256 1 36.48 ? C4 FMN 149 A 1 HETATM 6 O O4 FMN . . . B 2 3.384 6.637 -0.157 1 35.01 ? O4 FMN 149 A 1 HETATM 7 C C4A FMN . . . B 2 2.346 8.783 -0.206 1 37.63 ? C4A FMN 149 A 1 HETATM 8 N N5 FMN . . . B 2 1.109 8.318 -0.052 1 37.5 ? N5 FMN 149 A 1 HETATM 9 C C5A FMN . . . B 2 0.06 9.202 -0.012 1 37.24 ? C5A FMN 149 A 1 HETATM 10 C C6 FMN . . . B 2 -1.304 8.692 0.154 1 36.34 ? C6 FMN 149 A 1 HETATM 11 C C7 FMN . . . B 2 -2.402 9.509 0.204 1 34.82 ? C7 FMN 149 A 1 HETATM 12 C C7M FMN . . . B 2 -3.83 8.952 0.379 1 36.54 ? C7M FMN 149 A 1 HETATM 13 C C8 FMN . . . B 2 -2.219 10.985 0.089 1 34.02 ? C8 FMN 149 A 1 HETATM 14 C C8M FMN . . . B 2 -3.386 11.933 0.138 1 36.26 ? C8M FMN 149 A 1 HETATM 15 C C9 FMN . . . B 2 -0.918 11.487 -0.073 1 36.07 ? C9 FMN 149 A 1 HETATM 16 C C9A FMN . . . B 2 0.221 10.656 -0.126 1 36.13 ? C9A FMN 149 A 1 HETATM 17 N N10 FMN . . . B 2 1.568 11.112 -0.289 1 36.86 ? N10 FMN 149 A 1 HETATM 18 C C10 FMN . . . B 2 2.647 10.242 -0.338 1 37.11 ? C10 FMN 149 A 1 HETATM 19 C C1' FMN . . . B 2 1.857 12.56 -0.413 1 34 ? C1' FMN 149 A 1 HETATM 20 C C2' FMN . . . B 2 1.731 13.035 -1.861 1 31.39 ? C2' FMN 149 A 1 HETATM 21 O O2' FMN . . . B 2 2.662 12.317 -2.662 1 29.45 ? O2' FMN 149 A 1 HETATM 22 C C3' FMN . . . B 2 1.832 14.532 -2.063 1 29.29 ? C3' FMN 149 A 1 HETATM 23 O O3' FMN . . . B 2 2.832 15.036 -1.184 1 28.3 ? O3' FMN 149 A 1 HETATM 24 C C4' FMN . . . B 2 0.524 15.297 -1.963 1 29.96 ? C4' FMN 149 A 1 HETATM 25 O O4' FMN . . . B 2 -0.385 14.757 -2.915 1 31.47 ? O4' FMN 149 A 1 HETATM 26 C C5' FMN . . . B 2 0.604 16.813 -2.051 1 29.17 ? C5' FMN 149 A 1 HETATM 27 O O5' FMN . . . B 2 1.964 17.254 -2.219 1 32.1 ? O5' FMN 149 A 1 HETATM 28 P P FMN . . . B 2 2.351 18.784 -2.214 1 34.33 ? P FMN 149 A 1 HETATM 29 O O1P FMN . . . B 2 1.925 19.356 -0.884 1 32.34 ? O1P FMN 149 A 1 HETATM 30 O O2P FMN . . . B 2 1.716 19.441 -3.404 1 30.92 ? O2P FMN 149 A 1 HETATM 31 O O3P FMN . . . B 2 3.922 18.76 -2.294 1 30.7 ? O3P FMN 149 A 1 HETATM 32 H HN3 FMN . . . B 2 5.468 7.826 -0.609 1 0.87 ? HN3 FMN 149 A 1 HETATM 33 H H6 FMN . . . B 2 -1.46 7.624 0.128 1 0.87 ? H6 FMN 149 A 1 HETATM 34 H HM71 FMN . . . B 2 -3.779 7.965 0.812 1 0.87 ? HM71 FMN 149 A 1 HETATM 35 H HM72 FMN . . . B 2 -4.317 8.895 -0.586 1 0.87 ? HM72 FMN 149 A 1 HETATM 36 H HM73 FMN . . . B 2 -4.397 9.6 1.031 1 0.87 ? HM73 FMN 149 A 1 HETATM 37 H HM81 FMN . . . B 2 -3.026 12.937 0.302 1 0.87 ? HM81 FMN 149 A 1 HETATM 38 H HM82 FMN . . . B 2 -3.926 11.892 -0.796 1 0.87 ? HM82 FMN 149 A 1 HETATM 39 H HM83 FMN . . . B 2 -4.046 11.655 0.948 1 0.87 ? HM83 FMN 149 A 1 HETATM 40 H H9 FMN . . . B 2 -0.782 12.555 -0.155 1 0.87 ? H9 FMN 149 A 1 HETATM 41 H "H1'1" FMN . . . B 2 2.865 12.742 -0.07 1 0.87 ? "H1'1" FMN 149 A 1 HETATM 42 H "H1'2" FMN . . . B 2 1.16 13.108 0.201 1 0.87 ? "H1'2" FMN 149 A 1 HETATM 43 H H2' FMN . . . B 2 0.747 12.744 -2.197 1 0.87 ? H2' FMN 149 A 1 HETATM 44 H HO2' FMN . . . B 2 3.554 12.617 -2.465 1 0.87 ? HO2' FMN 149 A 1 HETATM 45 H H3' FMN . . . B 2 2.198 14.682 -3.069 1 0.87 ? H3' FMN 149 A 1 HETATM 46 H HO3' FMN . . . B 2 2.51 15.004 -0.28 1 0.87 ? HO3' FMN 149 A 1 HETATM 47 H H4' FMN . . . B 2 0.115 15.072 -0.99 1 0.87 ? H4' FMN 149 A 1 HETATM 48 H HO4' FMN . . . B 2 0.017 14.003 -3.35 1 0.87 ? HO4' FMN 149 A 1 HETATM 49 H "H5'1" FMN . . . B 2 0.206 17.239 -1.142 1 0.87 ? "H5'1" FMN 149 A 1 HETATM 50 H "H5'2" FMN . . . B 2 0.02 17.148 -2.894 1 0.87 ? "H5'2" FMN 149 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 6347 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #