data_2KBM # _model_server_result.job_id ggSu9oHU0Scw_pOi-DJhhQ _model_server_result.datetime_utc '2024-10-18 15:32:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":102}' # _entry.id 2KBM # _exptl.entry_id 2KBM _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O SER 19 A SER 19 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? metalc ? metalc2 C N ASP 24 A ASP 24 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc3 C O ASP 24 A ASP 24 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.795 ? metalc ? metalc4 C O LYS 27 A LYS 27 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc5 C OE2 GLU 32 A GLU 32 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc6 C OE1 GLU 32 A GLU 32 1_555 E CA CA . A CA 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc7 C O LEU 61 A LEU 61 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc8 C OD2 ASP 62 A ASP 62 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.97 ? metalc ? metalc9 C OD1 ASP 62 A ASP 62 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc10 C OD1 ASP 66 A ASP 66 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.768 ? metalc ? metalc11 C O GLU 68 A GLU 68 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? metalc ? metalc12 C OE2 GLU 73 A GLU 73 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc13 C OE1 GLU 73 A GLU 73 1_555 F CA CA . A CA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc14 D O SER 19 B SER 19 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.803 ? metalc ? metalc15 D N ASP 24 B ASP 24 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc16 D O ASP 24 B ASP 24 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc17 D O LYS 27 B LYS 27 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc18 D OE2 GLU 32 B GLU 32 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.246 ? metalc ? metalc19 D OE1 GLU 32 B GLU 32 1_555 G CA CA . B CA 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc20 D O LEU 61 B LEU 61 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc21 D OD2 ASP 62 B ASP 62 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 4.937 ? metalc ? metalc22 D OD1 ASP 62 B ASP 62 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc23 D OD1 ASP 66 B ASP 66 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.875 ? metalc ? metalc24 D O GLU 68 B GLU 68 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc25 D OE2 GLU 73 B GLU 73 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.882 ? metalc ? metalc26 D OE1 GLU 73 B GLU 73 1_555 H CA CA . B CA 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2KBM _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 CA A 1 100 100 CA CA . F 3 CA A 1 102 102 CA CA . G 3 CA B 1 101 101 CA CA . H 3 CA B 1 103 103 CA CA . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 70.408 _atom_site.Cartn_y 12.457 _atom_site.Cartn_z -8.937 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 0 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 102 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 352 _model_server_stats.query_time_ms 5903 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #