data_2KD4 # _model_server_result.job_id pFCZVbq0VOYOlVmCVMFaVQ _model_server_result.datetime_utc '2024-12-21 12:33:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kd4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":17}' # _entry.id 2KD4 # _exptl.entry_id 2KD4 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 209.247 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROFLAVIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O2' G 1 A G 1 1_555 A P C 2 A C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale2 A O2' C 2 A C 2 1_555 A P C 3 A C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale3 A O2' C 3 A C 3 1_555 A P G 4 A G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.625 ? covale ? covale4 A O2' G 4 A G 4 1_555 A P C 5 A C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale5 A O2' C 5 A C 5 1_555 A P G 6 A G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.611 ? covale ? covale6 A O2' G 6 A G 6 1_555 A P G 7 A G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? covale ? covale7 A O2' G 7 A G 7 1_555 A P C 8 A C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale8 B O2' G 1 B G 1 1_555 B P C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? covale ? covale9 B O2' C 2 B C 2 1_555 B P C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.609 ? covale ? covale10 B O2' C 3 B C 3 1_555 B P G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.613 ? covale ? covale11 B O2' G 4 B G 4 1_555 B P C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale12 B O2' C 5 B C 5 1_555 B P G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.605 ? covale ? covale13 B O2' G 6 B G 6 1_555 B P G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.6 ? covale ? covale14 B O2' G 7 B G 7 1_555 B P C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.601 ? hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 B N3 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 B O2 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 B N4 C 8 B C 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 C 2 A C 2 1_555 B N1 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 C 2 A C 2 1_555 B O6 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 C 2 A C 2 1_555 B N2 G 7 B G 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 C 3 A C 3 1_555 B N1 G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 C 3 A C 3 1_555 B O6 G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 C 3 A C 3 1_555 B N2 G 6 B G 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 G 4 A G 4 1_555 B N3 C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 G 4 A G 4 1_555 B O2 C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 G 4 A G 4 1_555 B N4 C 5 B C 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N3 C 5 A C 5 1_555 B N1 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N4 C 5 A C 5 1_555 B O6 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O2 C 5 A C 5 1_555 B N2 G 4 B G 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N1 G 6 A G 6 1_555 B N3 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N2 G 6 A G 6 1_555 B O2 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O6 G 6 A G 6 1_555 B N4 C 3 B C 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N1 G 7 A G 7 1_555 B N3 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N2 G 7 A G 7 1_555 B O2 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O6 G 7 A G 7 1_555 B N4 C 2 B C 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 C 8 A C 8 1_555 B N1 G 1 B G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N4 C 8 A C 8 1_555 B O6 G 1 B G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O2 C 8 A C 8 1_555 B N2 G 1 B G 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C13 H11 N3' _chem_comp.formula_weight 209.247 _chem_comp.id PRL _chem_comp.mon_nstd_flag . _chem_comp.name PROFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PRL doub 77 n y C1 C13 PRL sing 78 n y C1 H1 PRL sing 79 n n C2 C3 PRL sing 80 n y C2 H2 PRL sing 81 n n C3 C4 PRL doub 82 n y C3 N15 PRL sing 83 n n C4 C11 PRL sing 84 n y C4 H4 PRL sing 85 n n C5 C6 PRL doub 86 n y C5 C14 PRL sing 87 n y C5 H5 PRL sing 88 n n C6 C7 PRL sing 89 n y C6 N16 PRL sing 90 n n C7 C8 PRL doub 91 n y C7 H7 PRL sing 92 n n C8 C12 PRL sing 93 n y C8 H8 PRL sing 94 n n C9 C12 PRL doub 95 n y C9 C13 PRL sing 96 n y C9 H9 PRL sing 97 n n N10 C11 PRL sing 98 n y N10 C14 PRL doub 99 n y C11 C13 PRL doub 100 n y C12 C14 PRL sing 101 n y N15 HNF1 PRL sing 102 n n N15 HNF2 PRL sing 103 n n N16 HNG1 PRL sing 104 n n N16 HNG2 PRL sing 105 n n # _atom_sites.entry_id 2KD4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PRL A 1 17 17 PRL PRL . D 2 PRL B 1 17 17 PRL PRL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PRL . . . C 2 23.903 29.332 22.787 1 0 ? C1 PRL 17 A 1 HETATM 2 C C2 PRL . . . C 2 23.086 29.451 21.684 1 0 ? C2 PRL 17 A 1 HETATM 3 C C3 PRL . . . C 2 23.449 28.92 20.464 1 0 ? C3 PRL 17 A 1 HETATM 4 C C4 PRL . . . C 2 24.644 28.249 20.328 1 0 ? C4 PRL 17 A 1 HETATM 5 C C5 PRL . . . C 2 28.755 26.708 22.192 1 0 ? C5 PRL 17 A 1 HETATM 6 C C6 PRL . . . C 2 29.597 26.532 23.266 1 0 ? C6 PRL 17 A 1 HETATM 7 C C7 PRL . . . C 2 29.279 27.015 24.521 1 0 ? C7 PRL 17 A 1 HETATM 8 C C8 PRL . . . C 2 28.077 27.7 24.721 1 0 ? C8 PRL 17 A 1 HETATM 9 C C9 PRL . . . C 2 25.964 28.548 23.772 1 0 ? C9 PRL 17 A 1 HETATM 10 N N10 PRL . . . C 2 26.702 27.495 21.307 1 0 ? N10 PRL 17 A 1 HETATM 11 C C11 PRL . . . C 2 25.497 28.123 21.431 1 0 ? C11 PRL 17 A 1 HETATM 12 C C12 PRL . . . C 2 27.191 27.883 23.637 1 0 ? C12 PRL 17 A 1 HETATM 13 C C13 PRL . . . C 2 25.128 28.667 22.668 1 0 ? C13 PRL 17 A 1 HETATM 14 C C14 PRL . . . C 2 27.542 27.379 22.368 1 0 ? C14 PRL 17 A 1 HETATM 15 N N15 PRL . . . C 2 22.659 29.093 19.393 1 0 ? N15 PRL 17 A 1 HETATM 16 N N16 PRL . . . C 2 30.728 25.852 23.047 1 0 ? N16 PRL 17 A 1 HETATM 17 H H1 PRL . . . C 2 23.541 29.769 23.716 1 0 ? H1 PRL 17 A 1 HETATM 18 H H2 PRL . . . C 2 22.201 30.051 21.785 1 0 ? H2 PRL 17 A 1 HETATM 19 H H4 PRL . . . C 2 24.842 27.79 19.373 1 0 ? H4 PRL 17 A 1 HETATM 20 H H5 PRL . . . C 2 29.101 26.383 21.219 1 0 ? H5 PRL 17 A 1 HETATM 21 H H7 PRL . . . C 2 29.941 26.776 25.364 1 0 ? H7 PRL 17 A 1 HETATM 22 H H8 PRL . . . C 2 27.837 28.027 25.741 1 0 ? H8 PRL 17 A 1 HETATM 23 H H9 PRL . . . C 2 25.647 29.059 24.676 1 0 ? H9 PRL 17 A 1 HETATM 24 H HNF1 PRL . . . C 2 22.595 28.265 18.822 1 0 ? HNF1 PRL 17 A 1 HETATM 25 H HNF2 PRL . . . C 2 21.774 29.555 19.622 1 0 ? HNF2 PRL 17 A 1 HETATM 26 H HNG1 PRL . . . C 2 30.964 25.251 23.842 1 0 ? HNG1 PRL 17 A 1 HETATM 27 H HNG2 PRL . . . C 2 30.672 25.332 22.187 1 0 ? HNG2 PRL 17 A 1 HETATM 28 H H10 PRL . . . C 2 26.965 27.092 20.422 1 0 ? H10 PRL 17 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 237 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 28 #