data_2KGA # _model_server_result.job_id potoI3Gacr8rz7N4ffsLtQ _model_server_result.datetime_utc '2025-08-31 20:51:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":87}' # _entry.id 2KGA # _exptl.entry_id 2KGA _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 456.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 42 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id SXH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SXH _struct_conn.ptnr2_auth_seq_id 87 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.541 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H33 N2 O8 P S' _chem_comp.formula_weight 456.491 _chem_comp.id SXH _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P24 O25 SXH sing 224 n n O25 HO25 SXH sing 225 n n O26 P24 SXH doub 226 n n P24 O27 SXH sing 227 n n P24 O23 SXH sing 228 n n O23 HO23 SXH sing 229 n n O27 C28 SXH sing 230 n n C28 H28A SXH sing 231 n n C28 C29 SXH sing 232 n n C28 H28 SXH sing 233 n n C31 C29 SXH sing 234 n n C32 C29 SXH sing 235 n n C29 C30 SXH sing 236 n n C30 H30B SXH sing 237 n n C30 H30A SXH sing 238 n n C30 H30 SXH sing 239 n n H31B C31 SXH sing 240 n n C31 H31 SXH sing 241 n n C31 H31A SXH sing 242 n n O33 C32 SXH sing 243 n n C32 C34 SXH sing 244 n n C32 H32 SXH sing 245 n n HO33 O33 SXH sing 246 n n O35 C34 SXH doub 247 n n C34 N36 SXH sing 248 n n N36 C37 SXH sing 249 n n N36 HN36 SXH sing 250 n n H37 C37 SXH sing 251 n n H37A C37 SXH sing 252 n n C37 C38 SXH sing 253 n n C38 H38 SXH sing 254 n n C38 C39 SXH sing 255 n n C38 H38A SXH sing 256 n n N41 C39 SXH sing 257 n n C39 O40 SXH doub 258 n n HN41 N41 SXH sing 259 n n N41 C42 SXH sing 260 n n C43 C42 SXH sing 261 n n C42 H42 SXH sing 262 n n C42 H42A SXH sing 263 n n S1 C43 SXH sing 264 n n C43 H43 SXH sing 265 n n C43 H43A SXH sing 266 n n C1 S1 SXH sing 267 n n C2 C1 SXH sing 268 n n C1 O1 SXH doub 269 n n C3 C2 SXH sing 270 n n H2 C2 SXH sing 271 n n H2A C2 SXH sing 272 n n H3 C3 SXH sing 273 n n C3 C4 SXH sing 274 n n C3 H3A SXH sing 275 n n C5 C4 SXH sing 276 n n H4A C4 SXH sing 277 n n C4 H4 SXH sing 278 n n C6 C5 SXH sing 279 n n C5 H5 SXH sing 280 n n C5 H5A SXH sing 281 n n H6B C6 SXH sing 282 n n H6A C6 SXH sing 283 n n H6 C6 SXH sing 284 n n # _atom_sites.entry_id 2KGA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SXH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 87 _pdbx_nonpoly_scheme.auth_seq_num 87 _pdbx_nonpoly_scheme.pdb_mon_id SXH _pdbx_nonpoly_scheme.auth_mon_id SXH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P24 SXH . . . B 2 -6.507 13.251 0.37 1 1.09 ? P24 SXH 87 A 1 HETATM 2 O O26 SXH . . . B 2 -6.589 13.49 -1.174 1 1.22 ? O26 SXH 87 A 1 HETATM 3 O O23 SXH . . . B 2 -7.508 13.989 1.287 1 1.42 ? O23 SXH 87 A 1 HETATM 4 O O27 SXH . . . B 2 -5.087 13.672 0.813 1 1.1 ? O27 SXH 87 A 1 HETATM 5 C C28 SXH . . . B 2 -4.69 13.498 2.225 1 1.13 ? C28 SXH 87 A 1 HETATM 6 C C29 SXH . . . B 2 -3.307 14.122 2.49 1 1.27 ? C29 SXH 87 A 1 HETATM 7 C C30 SXH . . . B 2 -2.89 13.661 3.871 1 1.36 ? C30 SXH 87 A 1 HETATM 8 C C31 SXH . . . B 2 -2.298 13.614 1.453 1 1.28 ? C31 SXH 87 A 1 HETATM 9 C C32 SXH . . . B 2 -3.4 15.722 2.416 1 1.57 ? C32 SXH 87 A 1 HETATM 10 O O33 SXH . . . B 2 -3.982 16.133 1.176 1 1.62 ? O33 SXH 87 A 1 HETATM 11 C C34 SXH . . . B 2 -2.038 16.387 2.468 1 1.82 ? C34 SXH 87 A 1 HETATM 12 O O35 SXH . . . B 2 -1.563 16.859 1.428 1 2 ? O35 SXH 87 A 1 HETATM 13 N N36 SXH . . . B 2 -1.432 16.456 3.622 1 1.99 ? N36 SXH 87 A 1 HETATM 14 C C37 SXH . . . B 2 -0.122 17.091 3.811 1 2.29 ? C37 SXH 87 A 1 HETATM 15 C C38 SXH . . . B 2 0.386 17.04 5.258 1 2.49 ? C38 SXH 87 A 1 HETATM 16 C C39 SXH . . . B 2 0.894 15.681 5.746 1 2.41 ? C39 SXH 87 A 1 HETATM 17 O O40 SXH . . . B 2 1.209 15.501 6.939 1 2.91 ? O40 SXH 87 A 1 HETATM 18 N N41 SXH . . . B 2 0.976 14.745 4.835 1 2.12 ? N41 SXH 87 A 1 HETATM 19 C C42 SXH . . . B 2 1.448 13.393 5.1 1 2.36 ? C42 SXH 87 A 1 HETATM 20 C C43 SXH . . . B 2 1.065 12.405 4.021 1 2.13 ? C43 SXH 87 A 1 HETATM 21 S S1 SXH . . . B 2 1.394 13.063 2.452 1 1.95 ? S1 SXH 87 A 1 HETATM 22 C C1 SXH . . . B 2 1.424 11.551 1.575 1 1.93 ? C1 SXH 87 A 1 HETATM 23 O O1 SXH . . . B 2 1.44 10.43 2.122 1 2.69 ? O1 SXH 87 A 1 HETATM 24 C C2 SXH . . . B 2 1.503 11.685 0.062 1 1.85 ? C2 SXH 87 A 1 HETATM 25 C C3 SXH . . . B 2 0.14 11.818 -0.61 1 2.13 ? C3 SXH 87 A 1 HETATM 26 C C4 SXH . . . B 2 -0.725 10.576 -0.369 1 2 ? C4 SXH 87 A 1 HETATM 27 C C5 SXH . . . B 2 -2.052 10.643 -1.117 1 2.32 ? C5 SXH 87 A 1 HETATM 28 C C6 SXH . . . B 2 -1.814 10.615 -2.614 1 2.32 ? C6 SXH 87 A 1 HETATM 29 H H28 SXH . . . B 2 -4.66 12.443 2.454 1 1.05 ? H28 SXH 87 A 1 HETATM 30 H H28A SXH . . . B 2 -5.427 13.983 2.85 1 1.33 ? H28A SXH 87 A 1 HETATM 31 H H30 SXH . . . B 2 -2.829 12.584 3.889 1 1.75 ? H30 SXH 87 A 1 HETATM 32 H H30A SXH . . . B 2 -3.618 13.994 4.597 1 1.59 ? H30A SXH 87 A 1 HETATM 33 H H30B SXH . . . B 2 -1.924 14.083 4.109 1 1.78 ? H30B SXH 87 A 1 HETATM 34 H H31 SXH . . . B 2 -2.218 12.54 1.521 1 1.38 ? H31 SXH 87 A 1 HETATM 35 H H31A SXH . . . B 2 -2.632 13.888 0.462 1 1.81 ? H31A SXH 87 A 1 HETATM 36 H H31B SXH . . . B 2 -1.333 14.06 1.642 1 1.59 ? H31B SXH 87 A 1 HETATM 37 H H32 SXH . . . B 2 -3.969 16.09 3.258 1 1.74 ? H32 SXH 87 A 1 HETATM 38 H HO33 SXH . . . B 2 -3.259 16.655 0.792 1 1.72 ? HO33 SXH 87 A 1 HETATM 39 H HN36 SXH . . . B 2 -1.907 16.083 4.405 1 2 ? HN36 SXH 87 A 1 HETATM 40 H H37 SXH . . . B 2 0.606 16.671 3.133 1 2.37 ? H37 SXH 87 A 1 HETATM 41 H H37A SXH . . . B 2 -0.237 18.136 3.567 1 2.7 ? H37A SXH 87 A 1 HETATM 42 H H38 SXH . . . B 2 1.254 17.677 5.294 1 2.85 ? H38 SXH 87 A 1 HETATM 43 H H38A SXH . . . B 2 -0.387 17.391 5.922 1 2.79 ? H38A SXH 87 A 1 HETATM 44 H HN41 SXH . . . B 2 0.713 14.978 3.922 1 2.01 ? HN41 SXH 87 A 1 HETATM 45 H H42 SXH . . . B 2 2.529 13.432 5.122 1 2.79 ? H42 SXH 87 A 1 HETATM 46 H H42A SXH . . . B 2 1.077 13.067 6.059 1 2.69 ? H42A SXH 87 A 1 HETATM 47 H H43 SXH . . . B 2 -0.003 12.248 4.072 1 2.56 ? H43 SXH 87 A 1 HETATM 48 H H43A SXH . . . B 2 1.598 11.473 4.134 1 2.44 ? H43A SXH 87 A 1 HETATM 49 H H2 SXH . . . B 2 1.935 10.768 -0.31 1 1.95 ? H2 SXH 87 A 1 HETATM 50 H H2A SXH . . . B 2 2.122 12.527 -0.211 1 2.29 ? H2A SXH 87 A 1 HETATM 51 H H3 SXH . . . B 2 0.283 11.947 -1.673 1 2.79 ? H3 SXH 87 A 1 HETATM 52 H H3A SXH . . . B 2 -0.368 12.68 -0.203 1 2.49 ? H3A SXH 87 A 1 HETATM 53 H H4 SXH . . . B 2 -0.184 9.704 -0.708 1 2.2 ? H4 SXH 87 A 1 HETATM 54 H H4A SXH . . . B 2 -0.92 10.485 0.689 1 2.35 ? H4A SXH 87 A 1 HETATM 55 H H5 SXH . . . B 2 -2.56 11.563 -0.87 1 2.9 ? H5 SXH 87 A 1 HETATM 56 H H5A SXH . . . B 2 -2.661 9.794 -0.842 1 2.7 ? H5A SXH 87 A 1 HETATM 57 H H6 SXH . . . B 2 -2.761 10.66 -3.131 1 2.39 ? H6 SXH 87 A 1 HETATM 58 H H6A SXH . . . B 2 -1.304 9.7 -2.875 1 2.55 ? H6A SXH 87 A 1 HETATM 59 H H6B SXH . . . B 2 -1.204 11.46 -2.899 1 2.81 ? H6B SXH 87 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 121 _model_server_stats.query_time_ms 7623 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 59 #