data_2KGC # _model_server_result.job_id CW5JY_mwkIaSXlus_LW5ZQ _model_server_result.datetime_utc '2024-10-19 10:17:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kgc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":87}' # _entry.id 2KGC # _exptl.entry_id 2KGC _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 484.544 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 42 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 42 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id SXO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SXO _struct_conn.ptnr2_auth_seq_id 87 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.565 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H37 N2 O8 P S' _chem_comp.formula_weight 484.544 _chem_comp.id SXO _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] octanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P24 O25 SXO sing 224 n n O25 HO25 SXO sing 225 n n O23 P24 SXO doub 226 n n P24 O27 SXO sing 227 n n P24 O26 SXO sing 228 n n O26 HO26 SXO sing 229 n n O27 C28 SXO sing 230 n n C28 H28A SXO sing 231 n n C28 C29 SXO sing 232 n n C28 H28 SXO sing 233 n n C31 C29 SXO sing 234 n n C29 C32 SXO sing 235 n n C29 C30 SXO sing 236 n n H30 C30 SXO sing 237 n n C30 H30B SXO sing 238 n n C30 H30A SXO sing 239 n n H31 C31 SXO sing 240 n n H31A C31 SXO sing 241 n n C31 H31B SXO sing 242 n n O33 C32 SXO sing 243 n n C32 C34 SXO sing 244 n n C32 H32 SXO sing 245 n n HO33 O33 SXO sing 246 n n O35 C34 SXO doub 247 n n C34 N36 SXO sing 248 n n N36 C37 SXO sing 249 n n N36 HN36 SXO sing 250 n n H37 C37 SXO sing 251 n n C37 H37A SXO sing 252 n n C37 C38 SXO sing 253 n n C39 C38 SXO sing 254 n n C38 H38A SXO sing 255 n n C38 H38 SXO sing 256 n n N41 C39 SXO sing 257 n n C39 O40 SXO doub 258 n n HN41 N41 SXO sing 259 n n C42 N41 SXO sing 260 n n C43 C42 SXO sing 261 n n H42 C42 SXO sing 262 n n C42 H42A SXO sing 263 n n S1 C43 SXO sing 264 n n H43A C43 SXO sing 265 n n C43 H43 SXO sing 266 n n C1 S1 SXO sing 267 n n C2 C1 SXO sing 268 n n C1 O1 SXO doub 269 n n C3 C2 SXO sing 270 n n H2 C2 SXO sing 271 n n C2 H2A SXO sing 272 n n H3A C3 SXO sing 273 n n H3 C3 SXO sing 274 n n C3 C4 SXO sing 275 n n C5 C4 SXO sing 276 n n C4 H4 SXO sing 277 n n C4 H4A SXO sing 278 n n H5A C5 SXO sing 279 n n H5 C5 SXO sing 280 n n C5 C6 SXO sing 281 n n H6 C6 SXO sing 282 n n C6 C7 SXO sing 283 n n C6 H6A SXO sing 284 n n C8 C7 SXO sing 285 n n C7 H7 SXO sing 286 n n C7 H7A SXO sing 287 n n H8A C8 SXO sing 288 n n H8 C8 SXO sing 289 n n C8 H8B SXO sing 290 n n # _atom_sites.entry_id 2KGC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SXO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 87 _pdbx_nonpoly_scheme.auth_seq_num 87 _pdbx_nonpoly_scheme.pdb_mon_id SXO _pdbx_nonpoly_scheme.auth_mon_id SXO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P24 SXO . . . B 2 7.752 -12.57 2.951 1 1.12 ? P24 SXO 87 A 1 HETATM 2 O O26 SXO . . . B 2 8.905 -12.998 3.893 1 1.48 ? O26 SXO 87 A 1 HETATM 3 O O23 SXO . . . B 2 7.862 -12.878 1.438 1 1.45 ? O23 SXO 87 A 1 HETATM 4 O O27 SXO . . . B 2 6.423 -13.217 3.47 1 1.11 ? O27 SXO 87 A 1 HETATM 5 C C28 SXO . . . B 2 6.012 -12.956 4.85 1 1.02 ? C28 SXO 87 A 1 HETATM 6 C C29 SXO . . . B 2 4.637 -13.569 5.134 1 1.15 ? C29 SXO 87 A 1 HETATM 7 C C30 SXO . . . B 2 4.179 -13.011 6.469 1 1.14 ? C30 SXO 87 A 1 HETATM 8 C C31 SXO . . . B 2 3.653 -13.157 4.04 1 1.22 ? C31 SXO 87 A 1 HETATM 9 C C32 SXO . . . B 2 4.734 -15.131 5.19 1 1.49 ? C32 SXO 87 A 1 HETATM 10 O O33 SXO . . . B 2 5.37 -15.634 4.012 1 1.65 ? O33 SXO 87 A 1 HETATM 11 C C34 SXO . . . B 2 3.343 -15.764 5.281 1 1.7 ? C34 SXO 87 A 1 HETATM 12 O O35 SXO . . . B 2 2.835 -16.291 4.287 1 1.95 ? O35 SXO 87 A 1 HETATM 13 N N36 SXO . . . B 2 2.738 -15.729 6.459 1 1.69 ? N36 SXO 87 A 1 HETATM 14 C C37 SXO . . . B 2 1.416 -16.296 6.695 1 1.95 ? C37 SXO 87 A 1 HETATM 15 C C38 SXO . . . B 2 0.756 -15.707 7.931 1 1.97 ? C38 SXO 87 A 1 HETATM 16 C C39 SXO . . . B 2 -0.657 -15.222 7.668 1 1.75 ? C39 SXO 87 A 1 HETATM 17 O O40 SXO . . . B 2 -1.579 -15.456 8.452 1 2.21 ? O40 SXO 87 A 1 HETATM 18 N N41 SXO . . . B 2 -0.794 -14.535 6.544 1 1.79 ? N41 SXO 87 A 1 HETATM 19 C C42 SXO . . . B 2 -2.048 -13.965 6.073 1 1.94 ? C42 SXO 87 A 1 HETATM 20 C C43 SXO . . . B 2 -1.804 -12.662 5.334 1 1.99 ? C43 SXO 87 A 1 HETATM 21 S S1 SXO . . . B 2 -0.67 -12.916 4.051 1 1.96 ? S1 SXO 87 A 1 HETATM 22 C C1 SXO . . . B 2 -0.334 -11.248 3.684 1 1.93 ? C1 SXO 87 A 1 HETATM 23 O O1 SXO . . . B 2 -0.907 -10.293 4.211 1 2.52 ? O1 SXO 87 A 1 HETATM 24 C C2 SXO . . . B 2 0.779 -11.049 2.666 1 2.08 ? C2 SXO 87 A 1 HETATM 25 C C3 SXO . . . B 2 0.385 -10.182 1.474 1 1.81 ? C3 SXO 87 A 1 HETATM 26 C C4 SXO . . . B 2 0.205 -8.724 1.863 1 1.94 ? C4 SXO 87 A 1 HETATM 27 C C5 SXO . . . B 2 0.078 -7.835 0.635 1 1.78 ? C5 SXO 87 A 1 HETATM 28 C C6 SXO . . . B 2 -0.056 -6.371 1.023 1 1.64 ? C6 SXO 87 A 1 HETATM 29 C C7 SXO . . . B 2 -1.414 -6.068 1.639 1 1.79 ? C7 SXO 87 A 1 HETATM 30 C C8 SXO . . . B 2 -2.505 -6.148 0.595 1 1.84 ? C8 SXO 87 A 1 HETATM 31 H H28 SXO . . . B 2 5.967 -11.887 5.01 1 0.87 ? H28 SXO 87 A 1 HETATM 32 H H28A SXO . . . B 2 6.745 -13.39 5.512 1 1.22 ? H28A SXO 87 A 1 HETATM 33 H H30 SXO . . . B 2 4.101 -11.933 6.403 1 1.63 ? H30 SXO 87 A 1 HETATM 34 H H30A SXO . . . B 2 3.214 -13.427 6.72 1 1.46 ? H30A SXO 87 A 1 HETATM 35 H H30B SXO . . . B 2 4.894 -13.274 7.235 1 1.51 ? H30B SXO 87 A 1 HETATM 36 H H31 SXO . . . B 2 4.017 -13.497 3.081 1 1.61 ? H31 SXO 87 A 1 HETATM 37 H H31A SXO . . . B 2 3.556 -12.081 4.028 1 1.67 ? H31A SXO 87 A 1 HETATM 38 H H31B SXO . . . B 2 2.69 -13.602 4.235 1 1.56 ? H31B SXO 87 A 1 HETATM 39 H H32 SXO . . . B 2 5.314 -15.415 6.056 1 1.59 ? H32 SXO 87 A 1 HETATM 40 H HO33 SXO . . . B 2 4.691 -15.969 3.413 1 1.81 ? HO33 SXO 87 A 1 HETATM 41 H HN36 SXO . . . B 2 3.199 -15.301 7.22 1 1.57 ? HN36 SXO 87 A 1 HETATM 42 H H37 SXO . . . B 2 0.794 -16.09 5.837 1 2.17 ? H37 SXO 87 A 1 HETATM 43 H H37A SXO . . . B 2 1.512 -17.364 6.824 1 2.21 ? H37A SXO 87 A 1 HETATM 44 H H38 SXO . . . B 2 1.346 -14.866 8.261 1 2.32 ? H38 SXO 87 A 1 HETATM 45 H H38A SXO . . . B 2 0.733 -16.454 8.705 1 2.52 ? H38A SXO 87 A 1 HETATM 46 H HN41 SXO . . . B 2 -0.001 -14.396 5.984 1 2.16 ? HN41 SXO 87 A 1 HETATM 47 H H42 SXO . . . B 2 -2.52 -14.663 5.4 1 2.43 ? H42 SXO 87 A 1 HETATM 48 H H42A SXO . . . B 2 -2.694 -13.778 6.919 1 2.29 ? H42A SXO 87 A 1 HETATM 49 H H43 SXO . . . B 2 -2.732 -12.305 4.913 1 2.53 ? H43 SXO 87 A 1 HETATM 50 H H43A SXO . . . B 2 -1.396 -11.93 6.016 1 2.39 ? H43A SXO 87 A 1 HETATM 51 H H2 SXO . . . B 2 1.082 -12.018 2.3 1 2.52 ? H2 SXO 87 A 1 HETATM 52 H H2A SXO . . . B 2 1.614 -10.582 3.166 1 2.69 ? H2A SXO 87 A 1 HETATM 53 H H3 SXO . . . B 2 1.16 -10.248 0.726 1 2.1 ? H3 SXO 87 A 1 HETATM 54 H H3A SXO . . . B 2 -0.544 -10.553 1.063 1 2.3 ? H3A SXO 87 A 1 HETATM 55 H H4 SXO . . . B 2 1.06 -8.406 2.443 1 2.56 ? H4 SXO 87 A 1 HETATM 56 H H4A SXO . . . B 2 -0.692 -8.627 2.456 1 2.38 ? H4A SXO 87 A 1 HETATM 57 H H5 SXO . . . B 2 0.957 -7.957 0.021 1 2.27 ? H5 SXO 87 A 1 HETATM 58 H H5A SXO . . . B 2 -0.8 -8.13 0.077 1 2.22 ? H5A SXO 87 A 1 HETATM 59 H H6 SXO . . . B 2 0.076 -5.762 0.141 1 2.05 ? H6 SXO 87 A 1 HETATM 60 H H6A SXO . . . B 2 0.712 -6.132 1.744 1 2.11 ? H6A SXO 87 A 1 HETATM 61 H H7 SXO . . . B 2 -1.407 -5.072 2.052 1 2.32 ? H7 SXO 87 A 1 HETATM 62 H H7A SXO . . . B 2 -1.624 -6.791 2.414 1 2.28 ? H7A SXO 87 A 1 HETATM 63 H H8 SXO . . . B 2 -3.455 -5.91 1.051 1 2.18 ? H8 SXO 87 A 1 HETATM 64 H H8A SXO . . . B 2 -2.542 -7.146 0.184 1 2.4 ? H8A SXO 87 A 1 HETATM 65 H H8B SXO . . . B 2 -2.299 -5.44 -0.195 1 1.92 ? H8B SXO 87 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 5467 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 65 #