data_2KIN
#
_model_server_result.job_id            wO1ocVoR09NjmvhWWXCfdg 
_model_server_result.datetime_utc      '2024-11-15 20:37:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2kin 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":400}' 
#
_entry.id    2KIN 
#
_exptl.entry_id    2KIN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2KIN 
_cell.length_a            71.556 
_cell.length_b            73.674 
_cell.length_c            74.128 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2KIN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             F 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     2KIN 
_atom_sites.fract_transf_matrix[1][1]    0.013975 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013573 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01349 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 SO4 A 1 502 502 SO4 SO4 . 
D 3 SO4 A 1 504 504 SO4 SO4 . 
E 3 SO4 A 1 505 505 SO4 SO4 . 
F 4 ADP A 1 400 400 ADP ADP . 
G 5 HOH A 1 506 1 HOH HOH . 
G 5 HOH A 2 507 2 HOH HOH . 
G 5 HOH A 3 508 3 HOH HOH . 
G 5 HOH A 4 509 4 HOH HOH . 
G 5 HOH A 5 510 5 HOH HOH . 
G 5 HOH A 6 511 6 HOH HOH . 
G 5 HOH A 7 512 7 HOH HOH . 
G 5 HOH A 8 513 8 HOH HOH . 
G 5 HOH A 9 514 9 HOH HOH . 
G 5 HOH A 10 515 10 HOH HOH . 
G 5 HOH A 11 516 11 HOH HOH . 
G 5 HOH A 12 517 13 HOH HOH . 
G 5 HOH A 13 518 17 HOH HOH . 
G 5 HOH A 14 519 18 HOH HOH . 
G 5 HOH A 15 520 19 HOH HOH . 
G 5 HOH A 16 521 20 HOH HOH . 
G 5 HOH A 17 522 21 HOH HOH . 
G 5 HOH A 18 523 22 HOH HOH . 
G 5 HOH A 19 524 23 HOH HOH . 
G 5 HOH A 20 525 24 HOH HOH . 
G 5 HOH A 21 526 26 HOH HOH . 
G 5 HOH A 22 527 28 HOH HOH . 
G 5 HOH A 23 528 29 HOH HOH . 
G 5 HOH A 24 529 30 HOH HOH . 
G 5 HOH A 25 530 31 HOH HOH . 
G 5 HOH A 26 531 32 HOH HOH . 
G 5 HOH A 27 532 34 HOH HOH . 
G 5 HOH A 28 533 35 HOH HOH . 
G 5 HOH A 29 534 38 HOH HOH . 
G 5 HOH A 30 535 40 HOH HOH . 
G 5 HOH A 31 536 41 HOH HOH . 
G 5 HOH A 32 537 42 HOH HOH . 
G 5 HOH A 33 538 44 HOH HOH . 
G 5 HOH A 34 539 45 HOH HOH . 
G 5 HOH A 35 540 46 HOH HOH . 
G 5 HOH A 36 541 47 HOH HOH . 
G 5 HOH A 37 542 48 HOH HOH . 
G 5 HOH A 38 543 49 HOH HOH . 
G 5 HOH A 39 544 50 HOH HOH . 
G 5 HOH A 40 545 51 HOH HOH . 
G 5 HOH A 41 546 52 HOH HOH . 
G 5 HOH A 42 547 53 HOH HOH . 
G 5 HOH A 43 548 55 HOH HOH . 
G 5 HOH A 44 549 57 HOH HOH . 
G 5 HOH A 45 550 58 HOH HOH . 
G 5 HOH A 46 551 59 HOH HOH . 
G 5 HOH A 47 552 60 HOH HOH . 
G 5 HOH A 48 553 61 HOH HOH . 
G 5 HOH A 49 554 62 HOH HOH . 
G 5 HOH A 50 555 63 HOH HOH . 
G 5 HOH A 51 556 64 HOH HOH . 
G 5 HOH A 52 557 65 HOH HOH . 
G 5 HOH A 53 558 66 HOH HOH . 
G 5 HOH A 54 559 68 HOH HOH . 
G 5 HOH A 55 560 69 HOH HOH . 
G 5 HOH A 56 561 71 HOH HOH . 
G 5 HOH A 57 562 72 HOH HOH . 
G 5 HOH A 58 563 73 HOH HOH . 
G 5 HOH A 59 564 74 HOH HOH . 
G 5 HOH A 60 565 75 HOH HOH . 
G 5 HOH A 61 566 78 HOH HOH . 
G 5 HOH A 62 567 80 HOH HOH . 
G 5 HOH A 63 568 81 HOH HOH . 
G 5 HOH A 64 569 83 HOH HOH . 
G 5 HOH A 65 570 84 HOH HOH . 
G 5 HOH A 66 571 85 HOH HOH . 
G 5 HOH A 67 572 88 HOH HOH . 
G 5 HOH A 68 573 89 HOH HOH . 
G 5 HOH A 69 574 90 HOH HOH . 
G 5 HOH A 70 575 92 HOH HOH . 
G 5 HOH A 71 576 93 HOH HOH . 
G 5 HOH A 72 577 94 HOH HOH . 
G 5 HOH A 73 578 97 HOH HOH . 
G 5 HOH A 74 579 99 HOH HOH . 
G 5 HOH A 75 580 100 HOH HOH . 
G 5 HOH A 76 581 101 HOH HOH . 
G 5 HOH A 77 582 102 HOH HOH . 
G 5 HOH A 78 583 103 HOH HOH . 
G 5 HOH A 79 584 104 HOH HOH . 
G 5 HOH A 80 585 105 HOH HOH . 
G 5 HOH A 81 586 107 HOH HOH . 
G 5 HOH A 82 587 108 HOH HOH . 
G 5 HOH A 83 588 109 HOH HOH . 
G 5 HOH A 84 589 110 HOH HOH . 
G 5 HOH A 85 590 112 HOH HOH . 
G 5 HOH A 86 591 114 HOH HOH . 
G 5 HOH A 87 592 115 HOH HOH . 
G 5 HOH A 88 593 116 HOH HOH . 
G 5 HOH A 89 594 118 HOH HOH . 
G 5 HOH A 90 595 119 HOH HOH . 
G 5 HOH A 91 596 122 HOH HOH . 
G 5 HOH A 92 597 123 HOH HOH . 
G 5 HOH A 93 598 126 HOH HOH . 
G 5 HOH A 94 599 127 HOH HOH . 
G 5 HOH A 95 600 128 HOH HOH . 
G 5 HOH A 96 601 130 HOH HOH . 
G 5 HOH A 97 602 131 HOH HOH . 
G 5 HOH A 98 603 132 HOH HOH . 
G 5 HOH A 99 604 133 HOH HOH . 
G 5 HOH A 100 605 134 HOH HOH . 
G 5 HOH A 101 606 135 HOH HOH . 
G 5 HOH A 102 607 136 HOH HOH . 
G 5 HOH A 103 608 137 HOH HOH . 
G 5 HOH A 104 609 139 HOH HOH . 
G 5 HOH A 105 610 142 HOH HOH . 
G 5 HOH A 106 611 144 HOH HOH . 
G 5 HOH A 107 612 146 HOH HOH . 
G 5 HOH A 108 613 147 HOH HOH . 
G 5 HOH A 109 614 148 HOH HOH . 
G 5 HOH A 110 615 149 HOH HOH . 
G 5 HOH A 111 616 154 HOH HOH . 
G 5 HOH A 112 617 155 HOH HOH . 
G 5 HOH A 113 618 156 HOH HOH . 
G 5 HOH A 114 619 157 HOH HOH . 
G 5 HOH A 115 620 158 HOH HOH . 
G 5 HOH A 116 621 159 HOH HOH . 
G 5 HOH A 117 622 160 HOH HOH . 
G 5 HOH A 118 623 161 HOH HOH . 
G 5 HOH A 119 624 162 HOH HOH . 
G 5 HOH A 120 625 163 HOH HOH . 
G 5 HOH A 121 626 164 HOH HOH . 
G 5 HOH A 122 627 165 HOH HOH . 
G 5 HOH A 123 628 166 HOH HOH . 
G 5 HOH A 124 629 167 HOH HOH . 
G 5 HOH A 125 630 168 HOH HOH . 
G 5 HOH A 126 631 169 HOH HOH . 
G 5 HOH A 127 632 170 HOH HOH . 
G 5 HOH A 128 633 171 HOH HOH . 
G 5 HOH A 129 634 173 HOH HOH . 
G 5 HOH A 130 635 184 HOH HOH . 
G 5 HOH A 131 636 187 HOH HOH . 
G 5 HOH A 132 637 188 HOH HOH . 
G 5 HOH A 133 638 190 HOH HOH . 
G 5 HOH A 134 639 191 HOH HOH . 
G 5 HOH A 135 640 193 HOH HOH . 
G 5 HOH A 136 641 194 HOH HOH . 
G 5 HOH A 137 642 195 HOH HOH . 
G 5 HOH A 138 643 196 HOH HOH . 
G 5 HOH A 139 644 197 HOH HOH . 
G 5 HOH A 140 645 198 HOH HOH . 
G 5 HOH A 141 646 199 HOH HOH . 
G 5 HOH A 142 647 200 HOH HOH . 
G 5 HOH A 143 648 201 HOH HOH . 
G 5 HOH A 144 649 202 HOH HOH . 
G 5 HOH A 145 650 203 HOH HOH . 
G 5 HOH A 146 651 204 HOH HOH . 
G 5 HOH A 147 652 205 HOH HOH . 
H 5 HOH B 1 12 12 HOH HOH . 
H 5 HOH B 2 14 14 HOH HOH . 
H 5 HOH B 3 15 15 HOH HOH . 
H 5 HOH B 4 16 16 HOH HOH . 
H 5 HOH B 5 25 25 HOH HOH . 
H 5 HOH B 6 27 27 HOH HOH . 
H 5 HOH B 7 33 33 HOH HOH . 
H 5 HOH B 8 36 36 HOH HOH . 
H 5 HOH B 9 37 37 HOH HOH . 
H 5 HOH B 10 39 39 HOH HOH . 
H 5 HOH B 11 43 43 HOH HOH . 
H 5 HOH B 12 54 54 HOH HOH . 
H 5 HOH B 13 56 56 HOH HOH . 
H 5 HOH B 14 67 67 HOH HOH . 
H 5 HOH B 15 70 70 HOH HOH . 
H 5 HOH B 16 76 76 HOH HOH . 
H 5 HOH B 17 77 77 HOH HOH . 
H 5 HOH B 18 79 79 HOH HOH . 
H 5 HOH B 19 82 82 HOH HOH . 
H 5 HOH B 20 86 86 HOH HOH . 
H 5 HOH B 21 87 87 HOH HOH . 
H 5 HOH B 22 91 91 HOH HOH . 
H 5 HOH B 23 95 95 HOH HOH . 
H 5 HOH B 24 96 96 HOH HOH . 
H 5 HOH B 25 98 98 HOH HOH . 
H 5 HOH B 26 106 106 HOH HOH . 
H 5 HOH B 27 111 111 HOH HOH . 
H 5 HOH B 28 113 113 HOH HOH . 
H 5 HOH B 29 117 117 HOH HOH . 
H 5 HOH B 30 120 120 HOH HOH . 
H 5 HOH B 31 121 121 HOH HOH . 
H 5 HOH B 32 124 124 HOH HOH . 
H 5 HOH B 33 125 125 HOH HOH . 
H 5 HOH B 34 129 129 HOH HOH . 
H 5 HOH B 35 138 138 HOH HOH . 
H 5 HOH B 36 140 140 HOH HOH . 
H 5 HOH B 37 141 141 HOH HOH . 
H 5 HOH B 38 143 143 HOH HOH . 
H 5 HOH B 39 145 145 HOH HOH . 
H 5 HOH B 40 150 150 HOH HOH . 
H 5 HOH B 41 151 151 HOH HOH . 
H 5 HOH B 42 152 152 HOH HOH . 
H 5 HOH B 43 153 153 HOH HOH . 
H 5 HOH B 44 172 172 HOH HOH . 
H 5 HOH B 45 174 174 HOH HOH . 
H 5 HOH B 46 175 175 HOH HOH . 
H 5 HOH B 47 176 176 HOH HOH . 
H 5 HOH B 48 177 177 HOH HOH . 
H 5 HOH B 49 178 178 HOH HOH . 
H 5 HOH B 50 179 179 HOH HOH . 
H 5 HOH B 51 180 180 HOH HOH . 
H 5 HOH B 52 181 181 HOH HOH . 
H 5 HOH B 53 182 182 HOH HOH . 
H 5 HOH B 54 183 183 HOH HOH . 
H 5 HOH B 55 185 185 HOH HOH . 
H 5 HOH B 56 186 186 HOH HOH . 
H 5 HOH B 57 189 189 HOH HOH . 
H 5 HOH B 58 192 192 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . F 4 17.786 16.058 18.893 1 19.6 ? PB ADP 400 A 1 
HETATM 2 O O1B ADP . . . F 4 17.685 15.56 20.295 1 18.88 ? O1B ADP 400 A 1 
HETATM 3 O O2B ADP . . . F 4 19.175 15.937 18.386 1 20.36 ? O2B ADP 400 A 1 
HETATM 4 O O3B ADP . . . F 4 17.148 17.377 18.658 1 19.2 ? O3B ADP 400 A 1 
HETATM 5 P PA ADP . . . F 4 17.321 14.079 16.8 1 28.8 ? PA ADP 400 A 1 
HETATM 6 O O1A ADP . . . F 4 18.208 13.096 17.557 1 27.51 ? O1A ADP 400 A 1 
HETATM 7 O O2A ADP . . . F 4 17.986 14.41 15.608 1 18.07 ? O2A ADP 400 A 1 
HETATM 8 O O3A ADP . . . F 4 16.801 15.103 17.969 1 20.9 ? O3A ADP 400 A 1 
HETATM 9 O O5' ADP . . . F 4 15.989 13.16 16.631 1 30.97 ? O5' ADP 400 A 1 
HETATM 10 C C5' ADP . . . F 4 15.503 12.22 17.587 1 35.52 ? C5' ADP 400 A 1 
HETATM 11 C C4' ADP . . . F 4 14.818 11.172 16.663 1 39.73 ? C4' ADP 400 A 1 
HETATM 12 O O4' ADP . . . F 4 13.78 11.73 15.842 1 41.24 ? O4' ADP 400 A 1 
HETATM 13 C C3' ADP . . . F 4 15.895 10.664 15.675 1 42.04 ? C3' ADP 400 A 1 
HETATM 14 O O3' ADP . . . F 4 16.439 9.433 16.22 1 43.72 ? O3' ADP 400 A 1 
HETATM 15 C C2' ADP . . . F 4 14.871 10.061 14.546 1 44.16 ? C2' ADP 400 A 1 
HETATM 16 O O2' ADP . . . F 4 14.221 8.809 14.9 1 47.04 ? O2' ADP 400 A 1 
HETATM 17 C C1' ADP . . . F 4 13.832 11.208 14.506 1 42.71 ? C1' ADP 400 A 1 
HETATM 18 N N9 ADP . . . F 4 13.906 12.298 13.513 1 42.33 ? N9 ADP 400 A 1 
HETATM 19 C C8 ADP . . . F 4 14.201 13.628 13.728 1 41.2 ? C8 ADP 400 A 1 
HETATM 20 N N7 ADP . . . F 4 14.163 14.412 12.691 1 36.75 ? N7 ADP 400 A 1 
HETATM 21 C C5 ADP . . . F 4 13.788 13.486 11.7 1 40.11 ? C5 ADP 400 A 1 
HETATM 22 C C6 ADP . . . F 4 13.548 13.686 10.284 1 40.44 ? C6 ADP 400 A 1 
HETATM 23 N N6 ADP . . . F 4 13.651 14.928 9.791 1 37.99 ? N6 ADP 400 A 1 
HETATM 24 N N1 ADP . . . F 4 13.215 12.578 9.603 1 41.36 ? N1 ADP 400 A 1 
HETATM 25 C C2 ADP . . . F 4 13.141 11.331 10.138 1 42.23 ? C2 ADP 400 A 1 
HETATM 26 N N3 ADP . . . F 4 13.336 11.079 11.435 1 43.38 ? N3 ADP 400 A 1 
HETATM 27 C C4 ADP . . . F 4 13.638 12.215 12.154 1 41.71 ? C4 ADP 400 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           315 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#