data_2KLH # _model_server_result.job_id xFk6W7YEXVF-lkt6ZubkeQ _model_server_result.datetime_utc '2025-07-10 14:52:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2klh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":187}' # _entry.id 2KLH # _exptl.entry_id 2KLH _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 363.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H14 N5 O8 P' _chem_comp.formula_weight 363.221 _chem_comp.id 5GP _chem_comp.mon_nstd_flag . _chem_comp.name "GUANOSINE-5'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 5GP doub 1 n n P O2P 5GP sing 2 n n P O3P 5GP sing 3 n n P O5' 5GP sing 4 n n O2P HOP2 5GP sing 5 n n O3P HOP3 5GP sing 6 n n O5' C5' 5GP sing 7 n n C5' C4' 5GP sing 8 n n C5' "H5'1" 5GP sing 9 n n C5' "H5'2" 5GP sing 10 n n C4' O4' 5GP sing 11 n n C4' C3' 5GP sing 12 n n C4' H4' 5GP sing 13 n n O4' C1' 5GP sing 14 n n C3' O3' 5GP sing 15 n n C3' C2' 5GP sing 16 n n C3' H3' 5GP sing 17 n n O3' HO3' 5GP sing 18 n n C2' O2' 5GP sing 19 n n C2' C1' 5GP sing 20 n n C2' H2' 5GP sing 21 n n O2' HO2' 5GP sing 22 n n C1' N9 5GP sing 23 n n C1' H1' 5GP sing 24 n n N9 C8 5GP sing 25 n y N9 C4 5GP sing 26 n y C8 N7 5GP doub 27 n y C8 H8 5GP sing 28 n n N7 C5 5GP sing 29 n y C5 C6 5GP sing 30 n n C5 C4 5GP doub 31 n y C6 O6 5GP doub 32 n n C6 N1 5GP sing 33 n n N1 C2 5GP sing 34 n n N1 HN1 5GP sing 35 n n C2 N2 5GP sing 36 n n C2 N3 5GP doub 37 n n N2 HN21 5GP sing 38 n n N2 HN22 5GP sing 39 n n N3 C4 5GP sing 40 n n # _atom_sites.entry_id 2KLH _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 5GP A 1 187 187 5GP 5GP . D 2 5GP B 1 187 187 5GP 5GP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 5GP . . . C 2 10.162 -4.542 1.631 1 0 ? P 5GP 187 A 1 HETATM 2 O O1P 5GP . . . C 2 9.347 -3.587 2.423 1 0 ? O1P 5GP 187 A 1 HETATM 3 O O2P 5GP . . . C 2 11.407 -4.073 0.971 1 0 ? O2P 5GP 187 A 1 HETATM 4 O O3P 5GP . . . C 2 10.535 -5.775 2.568 1 0 ? O3P 5GP 187 A 1 HETATM 5 O O5' 5GP . . . C 2 9.221 -5.189 0.519 1 0 ? O5' 5GP 187 A 1 HETATM 6 C C5' 5GP . . . C 2 9.315 -6.572 0.193 1 0 ? C5' 5GP 187 A 1 HETATM 7 C C4' 5GP . . . C 2 8.16 -6.978 -0.684 1 0 ? C4' 5GP 187 A 1 HETATM 8 O O4' 5GP . . . C 2 8.451 -6.541 -2.04 1 0 ? O4' 5GP 187 A 1 HETATM 9 C C3' 5GP . . . C 2 7.902 -8.483 -0.764 1 0 ? C3' 5GP 187 A 1 HETATM 10 O O3' 5GP . . . C 2 6.508 -8.792 -0.806 1 0 ? O3' 5GP 187 A 1 HETATM 11 C C2' 5GP . . . C 2 8.625 -8.901 -2.036 1 0 ? C2' 5GP 187 A 1 HETATM 12 O O2' 5GP . . . C 2 7.958 -9.973 -2.67 1 0 ? O2' 5GP 187 A 1 HETATM 13 C C1' 5GP . . . C 2 8.477 -7.655 -2.902 1 0 ? C1' 5GP 187 A 1 HETATM 14 N N9 5GP . . . C 2 9.58 -7.496 -3.844 1 0 ? N9 5GP 187 A 1 HETATM 15 C C8 5GP . . . C 2 10.835 -7.007 -3.579 1 0 ? C8 5GP 187 A 1 HETATM 16 N N7 5GP . . . C 2 11.624 -7.023 -4.618 1 0 ? N7 5GP 187 A 1 HETATM 17 C C5 5GP . . . C 2 10.836 -7.545 -5.636 1 0 ? C5 5GP 187 A 1 HETATM 18 C C6 5GP . . . C 2 11.142 -7.805 -6.997 1 0 ? C6 5GP 187 A 1 HETATM 19 O O6 5GP . . . C 2 12.211 -7.63 -7.594 1 0 ? O6 5GP 187 A 1 HETATM 20 N N1 5GP . . . C 2 10.048 -8.33 -7.676 1 0 ? N1 5GP 187 A 1 HETATM 21 C C2 5GP . . . C 2 8.817 -8.574 -7.119 1 0 ? C2 5GP 187 A 1 HETATM 22 N N2 5GP . . . C 2 7.886 -9.076 -7.938 1 0 ? N2 5GP 187 A 1 HETATM 23 N N3 5GP . . . C 2 8.52 -8.343 -5.853 1 0 ? N3 5GP 187 A 1 HETATM 24 C C4 5GP . . . C 2 9.568 -7.831 -5.176 1 0 ? C4 5GP 187 A 1 HETATM 25 H HOP3 5GP . . . C 2 10.986 -5.426 3.341 1 0 ? HOP3 5GP 187 A 1 HETATM 26 H "H5'1" 5GP . . . C 2 9.296 -7.166 1.105 1 0 ? "H5'1" 5GP 187 A 1 HETATM 27 H "H5'2" 5GP . . . C 2 10.247 -6.765 -0.339 1 0 ? "H5'2" 5GP 187 A 1 HETATM 28 H H4' 5GP . . . C 2 7.258 -6.527 -0.266 1 0 ? H4' 5GP 187 A 1 HETATM 29 H H3' 5GP . . . C 2 8.294 -9.005 0.109 1 0 ? H3' 5GP 187 A 1 HETATM 30 H HO3' 5GP . . . C 2 6.43 -9.73 -0.997 1 0 ? HO3' 5GP 187 A 1 HETATM 31 H H2' 5GP . . . C 2 9.673 -9.122 -1.824 1 0 ? H2' 5GP 187 A 1 HETATM 32 H HO2' 5GP . . . C 2 8.524 -10.742 -2.599 1 0 ? HO2' 5GP 187 A 1 HETATM 33 H H1' 5GP . . . C 2 7.544 -7.649 -3.467 1 0 ? H1' 5GP 187 A 1 HETATM 34 H H8 5GP . . . C 2 11.14 -6.645 -2.608 1 0 ? H8 5GP 187 A 1 HETATM 35 H HN1 5GP . . . C 2 10.173 -8.546 -8.654 1 0 ? HN1 5GP 187 A 1 HETATM 36 H HN21 5GP . . . C 2 6.962 -9.274 -7.583 1 0 ? HN21 5GP 187 A 1 HETATM 37 H HN22 5GP . . . C 2 8.106 -9.258 -8.907 1 0 ? HN22 5GP 187 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 46 _model_server_stats.query_time_ms 2384 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #