data_2KOO # _model_server_result.job_id BaRedE_ed5WEkWhf_CrFjg _model_server_result.datetime_utc '2025-02-28 07:15:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2koo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2KOO # _exptl.entry_id 2KOO _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 456.491 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexanethioate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 40 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id SXH _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SXH _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.576 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H33 N2 O8 P S' _chem_comp.formula_weight 456.491 _chem_comp.id SXH _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[2-({N-[(2S)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] hexanethioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P24 O25 SXH sing 275 n n O25 HO25 SXH sing 276 n n O26 P24 SXH doub 277 n n P24 O27 SXH sing 278 n n P24 O23 SXH sing 279 n n O23 HO23 SXH sing 280 n n O27 C28 SXH sing 281 n n C28 H28A SXH sing 282 n n C28 C29 SXH sing 283 n n C28 H28 SXH sing 284 n n C31 C29 SXH sing 285 n n C32 C29 SXH sing 286 n n C29 C30 SXH sing 287 n n C30 H30B SXH sing 288 n n C30 H30A SXH sing 289 n n C30 H30 SXH sing 290 n n H31B C31 SXH sing 291 n n C31 H31 SXH sing 292 n n C31 H31A SXH sing 293 n n O33 C32 SXH sing 294 n n C32 C34 SXH sing 295 n n C32 H32 SXH sing 296 n n HO33 O33 SXH sing 297 n n O35 C34 SXH doub 298 n n C34 N36 SXH sing 299 n n N36 C37 SXH sing 300 n n N36 HN36 SXH sing 301 n n H37 C37 SXH sing 302 n n H37A C37 SXH sing 303 n n C37 C38 SXH sing 304 n n C38 H38 SXH sing 305 n n C38 C39 SXH sing 306 n n C38 H38A SXH sing 307 n n N41 C39 SXH sing 308 n n C39 O40 SXH doub 309 n n HN41 N41 SXH sing 310 n n N41 C42 SXH sing 311 n n C43 C42 SXH sing 312 n n C42 H42 SXH sing 313 n n C42 H42A SXH sing 314 n n S1 C43 SXH sing 315 n n C43 H43 SXH sing 316 n n C43 H43A SXH sing 317 n n C1 S1 SXH sing 318 n n C2 C1 SXH sing 319 n n C1 O1 SXH doub 320 n n C3 C2 SXH sing 321 n n H2 C2 SXH sing 322 n n H2A C2 SXH sing 323 n n H3 C3 SXH sing 324 n n C3 C4 SXH sing 325 n n C3 H3A SXH sing 326 n n C5 C4 SXH sing 327 n n H4A C4 SXH sing 328 n n C4 H4 SXH sing 329 n n C6 C5 SXH sing 330 n n C5 H5 SXH sing 331 n n C5 H5A SXH sing 332 n n H6B C6 SXH sing 333 n n H6A C6 SXH sing 334 n n H6 C6 SXH sing 335 n n # _atom_sites.entry_id 2KOO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SXH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id SXH _pdbx_nonpoly_scheme.auth_mon_id SXH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P24 SXH . . . B 2 -8.072 9.692 -3.161 1 0.86 ? P24 SXH 101 A 1 HETATM 2 O O26 SXH . . . B 2 -9.299 10.552 -3.22 1 1.13 ? O26 SXH 101 A 1 HETATM 3 O O23 SXH . . . B 2 -7.521 9.161 -4.43 1 1.1 ? O23 SXH 101 A 1 HETATM 4 O O27 SXH . . . B 2 -6.956 10.558 -2.445 1 0.87 ? O27 SXH 101 A 1 HETATM 5 C C28 SXH . . . B 2 -5.664 9.929 -2.163 1 0.52 ? C28 SXH 101 A 1 HETATM 6 C C29 SXH . . . B 2 -4.595 10.935 -1.727 1 0.73 ? C29 SXH 101 A 1 HETATM 7 C C30 SXH . . . B 2 -4.436 11.961 -2.83 1 1.22 ? C30 SXH 101 A 1 HETATM 8 C C31 SXH . . . B 2 -5.054 11.636 -0.461 1 1.14 ? C31 SXH 101 A 1 HETATM 9 C C32 SXH . . . B 2 -3.223 10.163 -1.41 1 1.23 ? C32 SXH 101 A 1 HETATM 10 O O33 SXH . . . B 2 -3.379 9.351 -0.284 1 1.96 ? O33 SXH 101 A 1 HETATM 11 C C34 SXH . . . B 2 -2.898 9.203 -2.499 1 1.3 ? C34 SXH 101 A 1 HETATM 12 O O35 SXH . . . B 2 -3.082 7.983 -2.306 1 2.26 ? O35 SXH 101 A 1 HETATM 13 N N36 SXH . . . B 2 -2.443 9.687 -3.589 1 0.83 ? N36 SXH 101 A 1 HETATM 14 C C37 SXH . . . B 2 -2.102 8.918 -4.736 1 1.02 ? C37 SXH 101 A 1 HETATM 15 C C38 SXH . . . B 2 -3.24 8.944 -5.745 1 1.13 ? C38 SXH 101 A 1 HETATM 16 C C39 SXH . . . B 2 -4.221 7.777 -5.665 1 0.88 ? C39 SXH 101 A 1 HETATM 17 O O40 SXH . . . B 2 -5.09 7.613 -6.533 1 1.41 ? O40 SXH 101 A 1 HETATM 18 N N41 SXH . . . B 2 -4.052 6.952 -4.662 1 0.55 ? N41 SXH 101 A 1 HETATM 19 C C42 SXH . . . B 2 -4.847 5.79 -4.44 1 0.93 ? C42 SXH 101 A 1 HETATM 20 C C43 SXH . . . B 2 -3.962 4.623 -4.155 1 0.65 ? C43 SXH 101 A 1 HETATM 21 S S1 SXH . . . B 2 -4.837 3.151 -4.342 1 1.15 ? S1 SXH 101 A 1 HETATM 22 C C1 SXH . . . B 2 -3.511 1.988 -4.471 1 0.81 ? C1 SXH 101 A 1 HETATM 23 O O1 SXH . . . B 2 -3.684 0.84 -4.908 1 1.38 ? O1 SXH 101 A 1 HETATM 24 C C2 SXH . . . B 2 -2.123 2.457 -3.992 1 0.61 ? C2 SXH 101 A 1 HETATM 25 C C3 SXH . . . B 2 -1.491 1.524 -2.986 1 0.46 ? C3 SXH 101 A 1 HETATM 26 C C4 SXH . . . B 2 -0.192 2.089 -2.445 1 0.62 ? C4 SXH 101 A 1 HETATM 27 C C5 SXH . . . B 2 0.317 1.277 -1.263 1 0.6 ? C5 SXH 101 A 1 HETATM 28 C C6 SXH . . . B 2 1.599 1.885 -0.736 1 0.67 ? C6 SXH 101 A 1 HETATM 29 H H28 SXH . . . B 2 -5.364 9.353 -3.023 1 0.56 ? H28 SXH 101 A 1 HETATM 30 H H28A SXH . . . B 2 -5.812 9.249 -1.34 1 0.57 ? H28A SXH 101 A 1 HETATM 31 H H30 SXH . . . B 2 -5.375 12.481 -2.958 1 1.72 ? H30 SXH 101 A 1 HETATM 32 H H30A SXH . . . B 2 -4.18 11.457 -3.75 1 1.65 ? H30A SXH 101 A 1 HETATM 33 H H30B SXH . . . B 2 -3.659 12.664 -2.567 1 1.79 ? H30B SXH 101 A 1 HETATM 34 H H31 SXH . . . B 2 -5.985 12.147 -0.652 1 1.54 ? H31 SXH 101 A 1 HETATM 35 H H31A SXH . . . B 2 -5.2 10.89 0.307 1 1.72 ? H31A SXH 101 A 1 HETATM 36 H H31B SXH . . . B 2 -4.3 12.343 -0.145 1 1.69 ? H31B SXH 101 A 1 HETATM 37 H H32 SXH . . . B 2 -2.416 10.873 -1.304 1 1.54 ? H32 SXH 101 A 1 HETATM 38 H HO33 SXH . . . B 2 -3.418 8.474 -0.688 1 2.21 ? HO33 SXH 101 A 1 HETATM 39 H HN36 SXH . . . B 2 -2.296 10.661 -3.639 1 1.08 ? HN36 SXH 101 A 1 HETATM 40 H H37 SXH . . . B 2 -1.282 9.453 -5.194 1 1.29 ? H37 SXH 101 A 1 HETATM 41 H H37A SXH . . . B 2 -1.798 7.924 -4.453 1 1.21 ? H37A SXH 101 A 1 HETATM 42 H H38 SXH . . . B 2 -3.728 9.904 -5.713 1 1.41 ? H38 SXH 101 A 1 HETATM 43 H H38A SXH . . . B 2 -2.75 8.87 -6.705 1 1.52 ? H38A SXH 101 A 1 HETATM 44 H HN41 SXH . . . B 2 -3.328 7.11 -4.012 1 0.67 ? HN41 SXH 101 A 1 HETATM 45 H H42 SXH . . . B 2 -5.563 5.94 -3.646 1 1.31 ? H42 SXH 101 A 1 HETATM 46 H H42A SXH . . . B 2 -5.381 5.559 -5.352 1 1.42 ? H42A SXH 101 A 1 HETATM 47 H H43 SXH . . . B 2 -3.586 4.751 -3.15 1 1.07 ? H43 SXH 101 A 1 HETATM 48 H H43A SXH . . . B 2 -3.163 4.674 -4.88 1 1.04 ? H43A SXH 101 A 1 HETATM 49 H H2 SXH . . . B 2 -2.162 3.438 -3.549 1 0.86 ? H2 SXH 101 A 1 HETATM 50 H H2A SXH . . . B 2 -1.46 2.484 -4.844 1 0.73 ? H2A SXH 101 A 1 HETATM 51 H H3 SXH . . . B 2 -1.3 0.586 -3.494 1 0.61 ? H3 SXH 101 A 1 HETATM 52 H H3A SXH . . . B 2 -2.183 1.367 -2.171 1 0.54 ? H3A SXH 101 A 1 HETATM 53 H H4 SXH . . . B 2 0.55 2.072 -3.228 1 1.24 ? H4 SXH 101 A 1 HETATM 54 H H4A SXH . . . B 2 -0.361 3.108 -2.127 1 1.12 ? H4A SXH 101 A 1 HETATM 55 H H5 SXH . . . B 2 0.524 0.265 -1.578 1 1.19 ? H5 SXH 101 A 1 HETATM 56 H H5A SXH . . . B 2 -0.425 1.282 -0.478 1 1.04 ? H5A SXH 101 A 1 HETATM 57 H H6 SXH . . . B 2 2.348 1.875 -1.514 1 1.32 ? H6 SXH 101 A 1 HETATM 58 H H6A SXH . . . B 2 1.951 1.309 0.107 1 1.22 ? H6A SXH 101 A 1 HETATM 59 H H6B SXH . . . B 2 1.414 2.903 -0.426 1 1.24 ? H6B SXH 101 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 4858 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 59 #