data_2KOP # _model_server_result.job_id wsDqopX1XPTBokNVP8c9UQ _model_server_result.datetime_utc '2025-04-12 07:29:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2KOP # _exptl.entry_id 2KOP _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 484.544 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(3S)-3-hydroxy-2,2-dimethyl-4-oxo-4-[[3-oxo-3-[2-(3-oxooctylsulfanyl)ethylamino]propyl]amino]butyl] dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 40 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id P24 _struct_conn.ptnr2_label_comp_id SYO _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SYO _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.554 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C19 H37 N2 O8 P S' _chem_comp.formula_weight 484.544 _chem_comp.id SYO _chem_comp.mon_nstd_flag . _chem_comp.name '[(3S)-3-hydroxy-2,2-dimethyl-4-oxo-4-[[3-oxo-3-[2-(3-oxooctylsulfanyl)ethylamino]propyl]amino]butyl] dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 SYO sing 275 n n C1 C2 SYO sing 276 n n S1 C43 SYO sing 277 n n C2 C3 SYO sing 278 n n C3 O3 SYO doub 279 n n C3 C4 SYO sing 280 n n C4 C5 SYO sing 281 n n C5 C6 SYO sing 282 n n C6 C7 SYO sing 283 n n C7 C8 SYO sing 284 n n O23 P24 SYO doub 285 n n P24 O26 SYO sing 286 n n P24 O27 SYO sing 287 n n P24 O29 SYO sing 288 n n O27 C28 SYO sing 289 n n C28 C29 SYO sing 290 n n C29 C30 SYO sing 291 n n C29 C31 SYO sing 292 n n C29 C32 SYO sing 293 n n C32 O33 SYO sing 294 n n C32 C34 SYO sing 295 n n C34 O35 SYO doub 296 n n C34 N36 SYO sing 297 n n N36 C37 SYO sing 298 n n C37 C38 SYO sing 299 n n C38 C39 SYO sing 300 n n C39 O40 SYO doub 301 n n C39 N41 SYO sing 302 n n N41 C42 SYO sing 303 n n C42 C43 SYO sing 304 n n C1 H1 SYO sing 305 n n C1 H1A SYO sing 306 n n C2 H2 SYO sing 307 n n C2 H2A SYO sing 308 n n C4 H4 SYO sing 309 n n C4 H4A SYO sing 310 n n C5 H5 SYO sing 311 n n C5 H5A SYO sing 312 n n C6 H6 SYO sing 313 n n C6 H6A SYO sing 314 n n C7 H7 SYO sing 315 n n C7 H7A SYO sing 316 n n C8 H8 SYO sing 317 n n C8 H8A SYO sing 318 n n C8 H8B SYO sing 319 n n O26 HO26 SYO sing 320 n n C28 H28 SYO sing 321 n n C28 H28A SYO sing 322 n n O29 HO29 SYO sing 323 n n C30 H30 SYO sing 324 n n C30 H30A SYO sing 325 n n C30 H30B SYO sing 326 n n C31 H31 SYO sing 327 n n C31 H31A SYO sing 328 n n C31 H31B SYO sing 329 n n C32 H32 SYO sing 330 n n O33 HO33 SYO sing 331 n n N36 HN36 SYO sing 332 n n C37 H37 SYO sing 333 n n C37 H37A SYO sing 334 n n C38 H38 SYO sing 335 n n C38 H38A SYO sing 336 n n N41 HN41 SYO sing 337 n n C42 H42 SYO sing 338 n n C42 H42A SYO sing 339 n n C43 H43 SYO sing 340 n n C43 H43A SYO sing 341 n n # _atom_sites.entry_id 2KOP _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SYO _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 101 _pdbx_nonpoly_scheme.pdb_mon_id SYO _pdbx_nonpoly_scheme.auth_mon_id SYO _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SYO . . . B 2 -2.942 6.992 0.266 1 0.56 ? C1 SYO 101 A 1 HETATM 2 S S1 SYO . . . B 2 -3.68 8.633 0.659 1 0.76 ? S1 SYO 101 A 1 HETATM 3 C C2 SYO . . . B 2 -2.892 6.603 -1.205 1 0.69 ? C2 SYO 101 A 1 HETATM 4 C C3 SYO . . . B 2 -2.828 5.101 -1.4 1 0.54 ? C3 SYO 101 A 1 HETATM 5 O O3 SYO . . . B 2 -3.866 4.429 -1.434 1 0.86 ? O3 SYO 101 A 1 HETATM 6 C C4 SYO . . . B 2 -1.482 4.441 -1.511 1 0.47 ? C4 SYO 101 A 1 HETATM 7 C C5 SYO . . . B 2 -1.307 3.309 -0.528 1 0.58 ? C5 SYO 101 A 1 HETATM 8 C C6 SYO . . . B 2 0.143 2.932 -0.404 1 0.57 ? C6 SYO 101 A 1 HETATM 9 C C7 SYO . . . B 2 0.347 1.816 0.585 1 0.49 ? C7 SYO 101 A 1 HETATM 10 C C8 SYO . . . B 2 1.818 1.54 0.711 1 0.47 ? C8 SYO 101 A 1 HETATM 11 O O23 SYO . . . B 2 -10.308 11.092 1.33 1 1.37 ? O23 SYO 101 A 1 HETATM 12 P P24 SYO . . . B 2 -9.017 11.156 0.595 1 0.96 ? P24 SYO 101 A 1 HETATM 13 O O26 SYO . . . B 2 -7.913 12.021 1.122 1 1.27 ? O26 SYO 101 A 1 HETATM 14 O O27 SYO . . . B 2 -9.297 11.583 -0.851 1 1.04 ? O27 SYO 101 A 1 HETATM 15 C C28 SYO . . . B 2 -8.133 11.594 -1.73 1 0.84 ? C28 SYO 101 A 1 HETATM 16 C C29 SYO . . . B 2 -8.55 11.602 -3.195 1 0.82 ? C29 SYO 101 A 1 HETATM 17 C C30 SYO . . . B 2 -9.518 12.736 -3.38 1 1.03 ? C30 SYO 101 A 1 HETATM 18 C C31 SYO . . . B 2 -7.317 11.816 -4.079 1 0.73 ? C31 SYO 101 A 1 HETATM 19 C C32 SYO . . . B 2 -9.259 10.218 -3.581 1 0.93 ? C32 SYO 101 A 1 HETATM 20 O O33 SYO . . . B 2 -9.935 10.306 -4.82 1 1.1 ? O33 SYO 101 A 1 HETATM 21 C C34 SYO . . . B 2 -8.279 9.069 -3.702 1 0.83 ? C34 SYO 101 A 1 HETATM 22 O O35 SYO . . . B 2 -8.265 8.393 -4.744 1 0.96 ? O35 SYO 101 A 1 HETATM 23 N N36 SYO . . . B 2 -7.489 8.861 -2.696 1 0.71 ? N36 SYO 101 A 1 HETATM 24 C C37 SYO . . . B 2 -6.468 7.821 -2.627 1 0.7 ? C37 SYO 101 A 1 HETATM 25 C C38 SYO . . . B 2 -5.312 8.071 -3.608 1 0.66 ? C38 SYO 101 A 1 HETATM 26 C C39 SYO . . . B 2 -4.446 9.264 -3.277 1 0.47 ? C39 SYO 101 A 1 HETATM 27 O O40 SYO . . . B 2 -4.046 10.044 -4.147 1 0.53 ? O40 SYO 101 A 1 HETATM 28 N N41 SYO . . . B 2 -4.173 9.382 -2.019 1 0.38 ? N41 SYO 101 A 1 HETATM 29 C C42 SYO . . . B 2 -3.378 10.395 -1.42 1 0.43 ? C42 SYO 101 A 1 HETATM 30 C C43 SYO . . . B 2 -2.651 9.814 -0.236 1 0.71 ? C43 SYO 101 A 1 HETATM 31 H H1 SYO . . . B 2 -3.537 6.23 0.746 1 1.07 ? H1 SYO 101 A 1 HETATM 32 H H1A SYO . . . B 2 -1.941 6.979 0.675 1 1.1 ? H1A SYO 101 A 1 HETATM 33 H H2 SYO . . . B 2 -1.965 7.019 -1.575 1 1.23 ? H2 SYO 101 A 1 HETATM 34 H H2A SYO . . . B 2 -3.738 6.979 -1.757 1 1.33 ? H2A SYO 101 A 1 HETATM 35 H H4 SYO . . . B 2 -0.712 5.18 -1.342 1 0.49 ? H4 SYO 101 A 1 HETATM 36 H H4A SYO . . . B 2 -1.383 4.049 -2.512 1 0.68 ? H4A SYO 101 A 1 HETATM 37 H H5 SYO . . . B 2 -1.869 2.451 -0.869 1 0.84 ? H5 SYO 101 A 1 HETATM 38 H H5A SYO . . . B 2 -1.671 3.623 0.44 1 0.83 ? H5A SYO 101 A 1 HETATM 39 H H6 SYO . . . B 2 0.7 3.799 -0.08 1 0.97 ? H6 SYO 101 A 1 HETATM 40 H H6A SYO . . . B 2 0.506 2.611 -1.369 1 0.93 ? H6A SYO 101 A 1 HETATM 41 H H7 SYO . . . B 2 -0.135 0.924 0.216 1 0.71 ? H7 SYO 101 A 1 HETATM 42 H H7A SYO . . . B 2 -0.055 2.101 1.546 1 0.75 ? H7A SYO 101 A 1 HETATM 43 H H8 SYO . . . B 2 2.326 2.429 1.052 1 1.11 ? H8 SYO 101 A 1 HETATM 44 H H8A SYO . . . B 2 2.211 1.25 -0.253 1 1.18 ? H8A SYO 101 A 1 HETATM 45 H H8B SYO . . . B 2 1.972 0.74 1.421 1 1.1 ? H8B SYO 101 A 1 HETATM 46 H H28 SYO . . . B 2 -7.506 12.422 -1.436 1 0.99 ? H28 SYO 101 A 1 HETATM 47 H H28A SYO . . . B 2 -7.587 10.682 -1.544 1 0.95 ? H28A SYO 101 A 1 HETATM 48 H H30 SYO . . . B 2 -10.348 12.54 -2.715 1 1.41 ? H30 SYO 101 A 1 HETATM 49 H H30A SYO . . . B 2 -9.856 12.759 -4.405 1 1.53 ? H30A SYO 101 A 1 HETATM 50 H H30B SYO . . . B 2 -9.044 13.667 -3.104 1 1.49 ? H30B SYO 101 A 1 HETATM 51 H H31 SYO . . . B 2 -6.848 12.758 -3.834 1 1.2 ? H31 SYO 101 A 1 HETATM 52 H H31A SYO . . . B 2 -7.612 11.808 -5.118 1 1.36 ? H31A SYO 101 A 1 HETATM 53 H H31B SYO . . . B 2 -6.625 11.007 -3.893 1 1.14 ? H31B SYO 101 A 1 HETATM 54 H H32 SYO . . . B 2 -9.896 9.926 -2.762 1 1.06 ? H32 SYO 101 A 1 HETATM 55 H HO33 SYO . . . B 2 -9.594 9.513 -5.258 1 1.21 ? HO33 SYO 101 A 1 HETATM 56 H HN36 SYO . . . B 2 -7.634 9.477 -1.947 1 0.72 ? HN36 SYO 101 A 1 HETATM 57 H H37 SYO . . . B 2 -6.099 7.749 -1.616 1 0.63 ? H37 SYO 101 A 1 HETATM 58 H H37A SYO . . . B 2 -6.93 6.882 -2.893 1 0.85 ? H37A SYO 101 A 1 HETATM 59 H H38 SYO . . . B 2 -4.654 7.224 -3.496 1 0.72 ? H38 SYO 101 A 1 HETATM 60 H H38A SYO . . . B 2 -5.682 8.149 -4.619 1 0.82 ? H38A SYO 101 A 1 HETATM 61 H HN41 SYO . . . B 2 -4.527 8.72 -1.39 1 0.44 ? HN41 SYO 101 A 1 HETATM 62 H H42 SYO . . . B 2 -2.699 10.852 -2.123 1 0.56 ? H42 SYO 101 A 1 HETATM 63 H H42A SYO . . . B 2 -4.035 11.159 -1.028 1 0.56 ? H42A SYO 101 A 1 HETATM 64 H H43 SYO . . . B 2 -2.272 10.586 0.415 1 1.29 ? H43 SYO 101 A 1 HETATM 65 H H43A SYO . . . B 2 -1.812 9.277 -0.656 1 1.49 ? H43A SYO 101 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 33 _model_server_stats.query_time_ms 4414 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #