data_2KSC # _model_server_result.job_id we6yJoFA3JXC07Dsk-77Og _model_server_result.datetime_utc '2024-11-09 23:18:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ksc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":125}' # _entry.id 2KSC # _exptl.entry_id 2KSC _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME B/C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2KSC _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KSC _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 45 A HIS 46 1_555 B FE HEB . A HEB 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc2 A NE2 HIS 69 A HIS 70 1_555 B FE HEB . A HEB 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? covale ? covale1 A NE2 HIS 116 A HIS 117 1_555 B CAB HEB . A HEB 125 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.495 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEB _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME B/C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX CONTAINING FE)' # _atom_sites.entry_id 2KSC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id HEB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 125 _pdbx_nonpoly_scheme.auth_seq_num 125 _pdbx_nonpoly_scheme.pdb_mon_id HEB _pdbx_nonpoly_scheme.auth_mon_id HEB _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEB . . . B 2 4.744 -2.377 2.261 1 0.41 ? FE HEB 125 A 1 HETATM 2 C CHA HEB . . . B 2 4.438 -2.772 5.61 1 0.52 ? CHA HEB 125 A 1 HETATM 3 C CHB HEB . . . B 2 2.605 0.241 2.371 1 0.47 ? CHB HEB 125 A 1 HETATM 4 C CHC HEB . . . B 2 5.032 -2.012 -1.097 1 0.33 ? CHC HEB 125 A 1 HETATM 5 C CHD HEB . . . B 2 6.906 -4.981 2.15 1 0.42 ? CHD HEB 125 A 1 HETATM 6 N NA HEB . . . B 2 3.743 -1.464 3.679 1 0.47 ? NA HEB 125 A 1 HETATM 7 C C1A HEB . . . B 2 3.72 -1.757 5.027 1 0.51 ? C1A HEB 125 A 1 HETATM 8 C C2A HEB . . . B 2 2.853 -0.856 5.752 1 0.56 ? C2A HEB 125 A 1 HETATM 9 C C3A HEB . . . B 2 2.349 0.01 4.838 1 0.54 ? C3A HEB 125 A 1 HETATM 10 C C4A HEB . . . B 2 2.898 -0.381 3.559 1 0.49 ? C4A HEB 125 A 1 HETATM 11 C CMA HEB . . . B 2 1.437 1.167 5.104 1 0.59 ? CMA HEB 125 A 1 HETATM 12 C CAA HEB . . . B 2 2.542 -0.899 7.216 1 0.62 ? CAA HEB 125 A 1 HETATM 13 C CBA HEB . . . B 2 3.61 -0.2 8.059 1 1.49 ? CBA HEB 125 A 1 HETATM 14 C CGA HEB . . . B 2 3.177 -0.163 9.521 1 1.43 ? CGA HEB 125 A 1 HETATM 15 O O1A HEB . . . B 2 3.984 0.228 10.348 1 1.6 ? O1A HEB 125 A 1 HETATM 16 O O2A HEB . . . B 2 2.044 -0.526 9.792 1 1.87 ? O2A HEB 125 A 1 HETATM 17 N NB HEB . . . B 2 3.981 -1.153 0.929 1 0.39 ? NB HEB 125 A 1 HETATM 18 C C1B HEB . . . B 2 3.105 -0.111 1.145 1 0.42 ? C1B HEB 125 A 1 HETATM 19 C C2B HEB . . . B 2 2.767 0.566 -0.079 1 0.41 ? C2B HEB 125 A 1 HETATM 20 C C3B HEB . . . B 2 3.432 -0.063 -1.074 1 0.37 ? C3B HEB 125 A 1 HETATM 21 C C4B HEB . . . B 2 4.195 -1.132 -0.44 1 0.36 ? C4B HEB 125 A 1 HETATM 22 C CMB HEB . . . B 2 1.872 1.752 -0.219 1 0.46 ? CMB HEB 125 A 1 HETATM 23 C CAB HEB . . . B 2 3.349 0.29 -2.541 1 0.36 ? CAB HEB 125 A 1 HETATM 24 C CBB HEB . . . B 2 1.894 0.417 -3.06 1 0.41 ? CBB HEB 125 A 1 HETATM 25 N NC HEB . . . B 2 5.743 -3.29 0.847 1 0.37 ? NC HEB 125 A 1 HETATM 26 C C1C HEB . . . B 2 5.752 -3.013 -0.502 1 0.33 ? C1C HEB 125 A 1 HETATM 27 C C2C HEB . . . B 2 6.619 -3.912 -1.22 1 0.33 ? C2C HEB 125 A 1 HETATM 28 C C3C HEB . . . B 2 7.149 -4.75 -0.304 1 0.36 ? C3C HEB 125 A 1 HETATM 29 C C4C HEB . . . B 2 6.604 -4.36 0.97 1 0.38 ? C4C HEB 125 A 1 HETATM 30 C CMC HEB . . . B 2 6.88 -3.916 -2.688 1 0.32 ? CMC HEB 125 A 1 HETATM 31 C CAC HEB . . . B 2 8.039 -5.778 -0.542 1 0.38 ? CAC HEB 125 A 1 HETATM 32 C CBC HEB . . . B 2 7.606 -7.007 -1 1 0.4 ? CBC HEB 125 A 1 HETATM 33 N ND HEB . . . B 2 5.506 -3.605 3.588 1 0.45 ? ND HEB 125 A 1 HETATM 34 C C1D HEB . . . B 2 6.401 -4.636 3.38 1 0.45 ? C1D HEB 125 A 1 HETATM 35 C C2D HEB . . . B 2 6.73 -5.313 4.614 1 0.5 ? C2D HEB 125 A 1 HETATM 36 C C3D HEB . . . B 2 6.015 -4.699 5.59 1 0.52 ? C3D HEB 125 A 1 HETATM 37 C C4D HEB . . . B 2 5.27 -3.64 4.947 1 0.49 ? C4D HEB 125 A 1 HETATM 38 C CMD HEB . . . B 2 7.696 -6.444 4.786 1 0.53 ? CMD HEB 125 A 1 HETATM 39 C CAD HEB . . . B 2 5.974 -5.068 7.04 1 0.58 ? CAD HEB 125 A 1 HETATM 40 C CBD HEB . . . B 2 6.895 -4.191 7.891 1 1.51 ? CBD HEB 125 A 1 HETATM 41 C CGD HEB . . . B 2 6.665 -4.478 9.371 1 1.44 ? CGD HEB 125 A 1 HETATM 42 O O1D HEB . . . B 2 6.428 -3.534 10.107 1 1.65 ? O1D HEB 125 A 1 HETATM 43 O O2D HEB . . . B 2 6.729 -5.636 9.747 1 1.75 ? O2D HEB 125 A 1 HETATM 44 H HHA HEB . . . B 2 4.356 -2.886 6.686 1 0.56 ? HHA HEB 125 A 1 HETATM 45 H HHB HEB . . . B 2 1.908 1.075 2.401 1 0.5 ? HHB HEB 125 A 1 HETATM 46 H HHC HEB . . . B 2 5.144 -1.906 -2.17 1 0.31 ? HHC HEB 125 A 1 HETATM 47 H HHD HEB . . . B 2 7.594 -5.822 2.104 1 0.43 ? HHD HEB 125 A 1 HETATM 48 H HMA1 HEB . . . B 2 1.52 1.467 6.136 1 1.09 ? HMA1 HEB 125 A 1 HETATM 49 H HMA2 HEB . . . B 2 0.418 0.878 4.893 1 1.11 ? HMA2 HEB 125 A 1 HETATM 50 H HMA3 HEB . . . B 2 1.713 1.999 4.475 1 1.25 ? HMA3 HEB 125 A 1 HETATM 51 H HAA1 HEB . . . B 2 2.467 -1.928 7.53 1 0.88 ? HAA1 HEB 125 A 1 HETATM 52 H HAA2 HEB . . . B 2 1.591 -0.422 7.39 1 1.43 ? HAA2 HEB 125 A 1 HETATM 53 H HBA1 HEB . . . B 2 3.745 0.81 7.7 1 2.29 ? HBA1 HEB 125 A 1 HETATM 54 H HBA2 HEB . . . B 2 4.542 -0.738 7.975 1 2.01 ? HBA2 HEB 125 A 1 HETATM 55 H HMB1 HEB . . . B 2 0.842 1.439 -0.13 1 1.13 ? HMB1 HEB 125 A 1 HETATM 56 H HMB2 HEB . . . B 2 2.028 2.21 -1.184 1 1.1 ? HMB2 HEB 125 A 1 HETATM 57 H HMB3 HEB . . . B 2 2.099 2.47 0.555 1 1.11 ? HMB3 HEB 125 A 1 HETATM 58 H HAB2 HEB . . . B 2 3.846 -0.473 -3.114 1 0.34 ? HAB2 HEB 125 A 1 HETATM 59 H HBB1 HEB . . . B 2 1.188 0.152 -2.283 1 1.14 ? HBB1 HEB 125 A 1 HETATM 60 H HBB2 HEB . . . B 2 1.746 -0.239 -3.909 1 1.03 ? HBB2 HEB 125 A 1 HETATM 61 H HBB3 HEB . . . B 2 1.713 1.436 -3.369 1 1.06 ? HBB3 HEB 125 A 1 HETATM 62 H HMC1 HEB . . . B 2 6.01 -4.292 -3.207 1 0.95 ? HMC1 HEB 125 A 1 HETATM 63 H HMC2 HEB . . . B 2 7.728 -4.55 -2.902 1 1.13 ? HMC2 HEB 125 A 1 HETATM 64 H HMC3 HEB . . . B 2 7.089 -2.91 -3.019 1 1.1 ? HMC3 HEB 125 A 1 HETATM 65 H HAC HEB . . . B 2 9.093 -5.619 -0.366 1 0.44 ? HAC HEB 125 A 1 HETATM 66 H HBC1 HEB . . . B 2 6.556 -7.19 -1.183 1 0.43 ? HBC1 HEB 125 A 1 HETATM 67 H HBC2 HEB . . . B 2 8.309 -7.805 -1.183 1 0.43 ? HBC2 HEB 125 A 1 HETATM 68 H HMD1 HEB . . . B 2 8.533 -6.311 4.119 1 1.24 ? HMD1 HEB 125 A 1 HETATM 69 H HMD2 HEB . . . B 2 7.201 -7.378 4.563 1 1.18 ? HMD2 HEB 125 A 1 HETATM 70 H HMD3 HEB . . . B 2 8.059 -6.462 5.801 1 0.99 ? HMD3 HEB 125 A 1 HETATM 71 H HAD1 HEB . . . B 2 6.271 -6.098 7.152 1 1.28 ? HAD1 HEB 125 A 1 HETATM 72 H HAD2 HEB . . . B 2 4.962 -4.965 7.401 1 1.04 ? HAD2 HEB 125 A 1 HETATM 73 H HBD1 HEB . . . B 2 6.684 -3.151 7.691 1 2.13 ? HBD1 HEB 125 A 1 HETATM 74 H HBD2 HEB . . . B 2 7.923 -4.403 7.64 1 2.25 ? HBD2 HEB 125 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 4640 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 74 #