data_2KSQ # _model_server_result.job_id YWkzyZ0Cn0GXNaywCjqUBA _model_server_result.datetime_utc '2024-11-21 14:34:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ksq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":185}' # _entry.id 2KSQ # _exptl.entry_id 2KSQ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 264.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C1 MYR 1 A MYR 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale3 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale4 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.032 ? covale ? covale5 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? covale ? covale6 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.028 ? covale ? covale7 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.03 ? covale ? covale8 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale9 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale10 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.031 ? covale ? covale11 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale12 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale13 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.029 ? covale ? covale14 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? covale ? covale15 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale16 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H18 N O3 S2' _chem_comp.formula_weight 264.385 _chem_comp.id MTN _chem_comp.mon_nstd_flag . _chem_comp.name 'S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms MTSL # _atom_sites.entry_id 2KSQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 182 55 MTN MTN . C 2 MTN A 1 183 59 MTN MTN . D 2 MTN A 1 184 83 MTN MTN . E 2 MTN A 1 185 117 MTN MTN . F 2 MTN A 1 186 176 MTN MTN . G 3 GTP A 1 187 182 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MTN . A . E 2 15.328 -12.681 6.478 1 0 ? O1 MTN 185 A 1 HETATM 2 O O1 MTN . B . E 2 16.541 -14.773 1.508 1 0 ? O1 MTN 185 A 1 HETATM 3 O O1 MTN . C . E 2 20.076 -9.44 6.862 1 0 ? O1 MTN 185 A 1 HETATM 4 N N1 MTN . A . E 2 14.639 -12.88 7.585 1 0 ? N1 MTN 185 A 1 HETATM 5 N N1 MTN . B . E 2 15.256 -14.611 1.268 1 0 ? N1 MTN 185 A 1 HETATM 6 N N1 MTN . C . E 2 19.397 -10.568 6.809 1 0 ? N1 MTN 185 A 1 HETATM 7 C C1 MTN . A . E 2 14.81 -11.709 8.445 1 0 ? C1 MTN 185 A 1 HETATM 8 C C1 MTN . B . E 2 14.514 -15.027 2.458 1 0 ? C1 MTN 185 A 1 HETATM 9 C C1 MTN . C . E 2 18.941 -10.887 8.163 1 0 ? C1 MTN 185 A 1 HETATM 10 C C2 MTN . A . E 2 13.532 -10.924 8.308 1 0 ? C2 MTN 185 A 1 HETATM 11 C C2 MTN . B . E 2 14.107 -13.749 3.141 1 0 ? C2 MTN 185 A 1 HETATM 12 C C2 MTN . C . E 2 17.607 -11.563 7.984 1 0 ? C2 MTN 185 A 1 HETATM 13 C C3 MTN . A . E 2 12.596 -11.669 7.711 1 0 ? C3 MTN 185 A 1 HETATM 14 C C3 MTN . B . E 2 14.286 -12.709 2.317 1 0 ? C3 MTN 185 A 1 HETATM 15 C C3 MTN . C . E 2 17.165 -11.383 6.733 1 0 ? C3 MTN 185 A 1 HETATM 16 C C4 MTN . A . E 2 11.417 -11.15 6.887 1 0 ? C4 MTN 185 A 1 HETATM 17 C C4 MTN . B . E 2 13.515 -11.388 2.358 1 0 ? C4 MTN 185 A 1 HETATM 18 C C4 MTN . C . E 2 15.7 -11.38 6.289 1 0 ? C4 MTN 185 A 1 HETATM 19 S S1 MTN . A . E 2 11.785 -9.515 6.153 1 0 ? S1 MTN 185 A 1 HETATM 20 S S1 MTN . B . E 2 12.477 -11.273 3.861 1 0 ? S1 MTN 185 A 1 HETATM 21 S S1 MTN . C . E 2 15.054 -9.674 6.159 1 0 ? S1 MTN 185 A 1 HETATM 22 C C5 MTN . A . E 2 13.187 -13.033 7.421 1 0 ? C5 MTN 185 A 1 HETATM 23 C C5 MTN . B . E 2 14.82 -13.236 0.999 1 0 ? C5 MTN 185 A 1 HETATM 24 C C5 MTN . C . E 2 18.184 -10.55 5.983 1 0 ? C5 MTN 185 A 1 HETATM 25 C C6 MTN . A . E 2 12.705 -14.075 8.431 1 0 ? C6 MTN 185 A 1 HETATM 26 C C6 MTN . B . E 2 13.723 -13.286 -0.066 1 0 ? C6 MTN 185 A 1 HETATM 27 C C6 MTN . C . E 2 17.725 -9.097 5.848 1 0 ? C6 MTN 185 A 1 HETATM 28 C C7 MTN . A . E 2 12.777 -13.472 6.014 1 0 ? C7 MTN 185 A 1 HETATM 29 C C7 MTN . B . E 2 15.95 -12.324 0.513 1 0 ? C7 MTN 185 A 1 HETATM 30 C C7 MTN . C . E 2 18.39 -11.141 4.588 1 0 ? C7 MTN 185 A 1 HETATM 31 C C8 MTN . A . E 2 15.978 -10.807 8.037 1 0 ? C8 MTN 185 A 1 HETATM 32 C C8 MTN . B . E 2 13.25 -15.831 2.149 1 0 ? C8 MTN 185 A 1 HETATM 33 C C8 MTN . C . E 2 19.868 -11.843 8.918 1 0 ? C8 MTN 185 A 1 HETATM 34 C C9 MTN . A . E 2 14.995 -12.168 9.893 1 0 ? C9 MTN 185 A 1 HETATM 35 C C9 MTN . B . E 2 15.435 -15.842 3.369 1 0 ? C9 MTN 185 A 1 HETATM 36 C C9 MTN . C . E 2 18.776 -9.591 8.96 1 0 ? C9 MTN 185 A 1 HETATM 37 H H2 MTN . A . E 2 13.397 -9.956 8.522 1 0 ? H2 MTN 185 A 1 HETATM 38 H H2 MTN . B . E 2 13.836 -13.638 4.098 1 0 ? H2 MTN 185 A 1 HETATM 39 H H2 MTN . C . E 2 17.145 -12.16 8.639 1 0 ? H2 MTN 185 A 1 HETATM 40 H H41 MTN . A . E 2 11.197 -11.843 6.085 1 0 ? H41 MTN 185 A 1 HETATM 41 H H41 MTN . B . E 2 14.209 -10.558 2.358 1 0 ? H41 MTN 185 A 1 HETATM 42 H H41 MTN . C . E 2 15.61 -11.855 5.322 1 0 ? H41 MTN 185 A 1 HETATM 43 H H42 MTN . A . E 2 10.557 -11.053 7.529 1 0 ? H42 MTN 185 A 1 HETATM 44 H H42 MTN . B . E 2 12.876 -11.328 1.493 1 0 ? H42 MTN 185 A 1 HETATM 45 H H42 MTN . C . E 2 15.112 -11.915 7.016 1 0 ? H42 MTN 185 A 1 HETATM 46 H H61 MTN . A . E 2 12.22 -14.887 7.909 1 0 ? H61 MTN 185 A 1 HETATM 47 H H61 MTN . B . E 2 12.937 -13.951 0.258 1 0 ? H61 MTN 185 A 1 HETATM 48 H H61 MTN . C . E 2 18.448 -8.446 6.317 1 0 ? H61 MTN 185 A 1 HETATM 49 H H62 MTN . A . E 2 12.004 -13.618 9.114 1 0 ? H62 MTN 185 A 1 HETATM 50 H H62 MTN . B . E 2 14.139 -13.647 -0.995 1 0 ? H62 MTN 185 A 1 HETATM 51 H H62 MTN . C . E 2 16.765 -8.975 6.33 1 0 ? H62 MTN 185 A 1 HETATM 52 H H63 MTN . A . E 2 13.549 -14.458 8.986 1 0 ? H63 MTN 185 A 1 HETATM 53 H H63 MTN . B . E 2 13.319 -12.295 -0.215 1 0 ? H63 MTN 185 A 1 HETATM 54 H H63 MTN . C . E 2 17.637 -8.842 4.802 1 0 ? H63 MTN 185 A 1 HETATM 55 H H71 MTN . A . E 2 13.628 -13.401 5.353 1 0 ? H71 MTN 185 A 1 HETATM 56 H H71 MTN . B . E 2 16.03 -11.47 1.169 1 0 ? H71 MTN 185 A 1 HETATM 57 H H71 MTN . C . E 2 19.293 -10.737 4.154 1 0 ? H71 MTN 185 A 1 HETATM 58 H H72 MTN . A . E 2 11.987 -12.831 5.653 1 0 ? H72 MTN 185 A 1 HETATM 59 H H72 MTN . B . E 2 15.734 -11.988 -0.49 1 0 ? H72 MTN 185 A 1 HETATM 60 H H72 MTN . C . E 2 17.547 -10.891 3.962 1 0 ? H72 MTN 185 A 1 HETATM 61 H H73 MTN . A . E 2 12.428 -14.494 6.043 1 0 ? H73 MTN 185 A 1 HETATM 62 H H73 MTN . B . E 2 16.88 -12.872 0.517 1 0 ? H73 MTN 185 A 1 HETATM 63 H H73 MTN . C . E 2 18.476 -12.215 4.661 1 0 ? H73 MTN 185 A 1 HETATM 64 H H81 MTN . A . E 2 15.75 -10.33 7.097 1 0 ? H81 MTN 185 A 1 HETATM 65 H H81 MTN . B . E 2 12.994 -16.442 3.002 1 0 ? H81 MTN 185 A 1 HETATM 66 H H81 MTN . C . E 2 20.896 -11.566 8.736 1 0 ? H81 MTN 185 A 1 HETATM 67 H H82 MTN . A . E 2 16.872 -11.403 7.933 1 0 ? H82 MTN 185 A 1 HETATM 68 H H82 MTN . B . E 2 13.426 -16.465 1.293 1 0 ? H82 MTN 185 A 1 HETATM 69 H H82 MTN . C . E 2 19.7 -12.852 8.575 1 0 ? H82 MTN 185 A 1 HETATM 70 H H83 MTN . A . E 2 16.132 -10.054 8.795 1 0 ? H83 MTN 185 A 1 HETATM 71 H H83 MTN . B . E 2 12.435 -15.153 1.934 1 0 ? H83 MTN 185 A 1 HETATM 72 H H83 MTN . C . E 2 19.661 -11.782 9.976 1 0 ? H83 MTN 185 A 1 HETATM 73 H H91 MTN . A . E 2 14.028 -12.335 10.345 1 0 ? H91 MTN 185 A 1 HETATM 74 H H91 MTN . B . E 2 16.099 -16.442 2.764 1 0 ? H91 MTN 185 A 1 HETATM 75 H H91 MTN . C . E 2 19.572 -9.511 9.686 1 0 ? H91 MTN 185 A 1 HETATM 76 H H92 MTN . A . E 2 15.525 -11.408 10.448 1 0 ? H92 MTN 185 A 1 HETATM 77 H H92 MTN . B . E 2 14.84 -16.487 3.998 1 0 ? H92 MTN 185 A 1 HETATM 78 H H92 MTN . C . E 2 17.824 -9.599 9.468 1 0 ? H92 MTN 185 A 1 HETATM 79 H H93 MTN . A . E 2 15.563 -13.087 9.909 1 0 ? H93 MTN 185 A 1 HETATM 80 H H93 MTN . B . E 2 16.016 -15.173 3.985 1 0 ? H93 MTN 185 A 1 HETATM 81 H H93 MTN . C . E 2 18.818 -8.747 8.286 1 0 ? H93 MTN 185 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 74 _model_server_stats.query_time_ms 5389 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 81 #