data_2KSQ # _model_server_result.job_id jtfsG1_TMyBE_O_JPTb7YA _model_server_result.datetime_utc '2024-11-23 09:41:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ksq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":187}' # _entry.id 2KSQ # _exptl.entry_id 2KSQ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 523.18 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C1 MYR 1 A MYR 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale3 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale4 A SG CYS 55 A CYS 55 1_555 B S1 MTN . A MTN 182 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.032 ? covale ? covale5 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? covale ? covale6 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.028 ? covale ? covale7 A SG CYS 59 A CYS 59 1_555 C S1 MTN . A MTN 183 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.03 ? covale ? covale8 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale9 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale10 A SG CYS 83 A CYS 83 1_555 D S1 MTN . A MTN 184 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.031 ? covale ? covale11 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.03 ? covale ? covale12 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale13 A SG CYS 117 A CYS 117 1_555 E S1 MTN . A MTN 185 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.029 ? covale ? covale14 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.029 ? covale ? covale15 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.03 ? covale ? covale16 A SG CYS 176 A CYS 176 1_555 F S1 MTN . A MTN 186 1_555 ? ? ? ? C ? ? ? ? ? ? ? 2.029 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2KSQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MTN A 1 182 55 MTN MTN . C 2 MTN A 1 183 59 MTN MTN . D 2 MTN A 1 184 83 MTN MTN . E 2 MTN A 1 185 117 MTN MTN . F 2 MTN A 1 186 176 MTN MTN . G 3 GTP A 1 187 182 GTP GTP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . G 3 2.443 13.567 5.04 1 0 ? PG GTP 187 A 1 HETATM 2 O O1G GTP . . . G 3 0.903 13.314 5.36 1 0 ? O1G GTP 187 A 1 HETATM 3 O O2G GTP . . . G 3 2.895 15.05 5.407 1 0 ? O2G GTP 187 A 1 HETATM 4 O O3G GTP . . . G 3 3.389 12.465 5.693 1 0 ? O3G GTP 187 A 1 HETATM 5 O O3B GTP . . . G 3 2.63 13.43 3.448 1 0 ? O3B GTP 187 A 1 HETATM 6 P PB GTP . . . G 3 1.485 12.759 2.541 1 0 ? PB GTP 187 A 1 HETATM 7 O O1B GTP . . . G 3 2.171 11.7 1.568 1 0 ? O1B GTP 187 A 1 HETATM 8 O O2B GTP . . . G 3 0.356 12.134 3.476 1 0 ? O2B GTP 187 A 1 HETATM 9 O O3A GTP . . . G 3 0.831 13.919 1.643 1 0 ? O3A GTP 187 A 1 HETATM 10 P PA GTP . . . G 3 -0.641 14.466 1.981 1 0 ? PA GTP 187 A 1 HETATM 11 O O1A GTP . . . G 3 -0.622 15.186 3.401 1 0 ? O1A GTP 187 A 1 HETATM 12 O O2A GTP . . . G 3 -1.681 13.266 1.857 1 0 ? O2A GTP 187 A 1 HETATM 13 O O5' GTP . . . G 3 -0.951 15.547 0.853 1 0 ? O5' GTP 187 A 1 HETATM 14 C C5' GTP . . . G 3 -1.362 16.867 1.197 1 0 ? C5' GTP 187 A 1 HETATM 15 C C4' GTP . . . G 3 -1.051 17.819 0.067 1 0 ? C4' GTP 187 A 1 HETATM 16 O O4' GTP . . . G 3 -0.833 17.045 -1.145 1 0 ? O4' GTP 187 A 1 HETATM 17 C C3' GTP . . . G 3 -2.166 18.803 -0.274 1 0 ? C3' GTP 187 A 1 HETATM 18 O O3' GTP . . . G 3 -1.644 20.044 -0.732 1 0 ? O3' GTP 187 A 1 HETATM 19 C C2' GTP . . . G 3 -2.942 18.07 -1.36 1 0 ? C2' GTP 187 A 1 HETATM 20 O O2' GTP . . . G 3 -3.583 18.978 -2.235 1 0 ? O2' GTP 187 A 1 HETATM 21 C C1' GTP . . . G 3 -1.805 17.387 -2.114 1 0 ? C1' GTP 187 A 1 HETATM 22 N N9 GTP . . . G 3 -2.203 16.171 -2.816 1 0 ? N9 GTP 187 A 1 HETATM 23 C C8 GTP . . . G 3 -2.033 14.875 -2.394 1 0 ? C8 GTP 187 A 1 HETATM 24 N N7 GTP . . . G 3 -2.49 13.993 -3.238 1 0 ? N7 GTP 187 A 1 HETATM 25 C C5 GTP . . . G 3 -2.995 14.752 -4.287 1 0 ? C5 GTP 187 A 1 HETATM 26 C C6 GTP . . . G 3 -3.617 14.349 -5.493 1 0 ? C6 GTP 187 A 1 HETATM 27 O O6 GTP . . . G 3 -3.858 13.203 -5.892 1 0 ? O6 GTP 187 A 1 HETATM 28 N N1 GTP . . . G 3 -3.977 15.446 -6.275 1 0 ? N1 GTP 187 A 1 HETATM 29 C C2 GTP . . . G 3 -3.765 16.759 -5.934 1 0 ? C2 GTP 187 A 1 HETATM 30 N N2 GTP . . . G 3 -4.189 17.677 -6.817 1 0 ? N2 GTP 187 A 1 HETATM 31 N N3 GTP . . . G 3 -3.181 17.147 -4.812 1 0 ? N3 GTP 187 A 1 HETATM 32 C C4 GTP . . . G 3 -2.824 16.099 -4.041 1 0 ? C4 GTP 187 A 1 HETATM 33 H H5' GTP . . . G 3 -2.434 16.881 1.386 1 0 ? H5' GTP 187 A 1 HETATM 34 H H4' GTP . . . G 3 -0.187 18.414 0.367 1 0 ? H4' GTP 187 A 1 HETATM 35 H H3' GTP . . . G 3 -2.78 19.035 0.596 1 0 ? H3' GTP 187 A 1 HETATM 36 H HO3' GTP . . . G 3 -2.19 20.328 -1.465 1 0 ? HO3' GTP 187 A 1 HETATM 37 H H2' GTP . . . G 3 -3.629 17.344 -0.922 1 0 ? H2' GTP 187 A 1 HETATM 38 H HO2' GTP . . . G 3 -4.17 19.517 -1.707 1 0 ? HO2' GTP 187 A 1 HETATM 39 H H1' GTP . . . G 3 -1.324 18.055 -2.83 1 0 ? H1' GTP 187 A 1 HETATM 40 H H8 GTP . . . G 3 -1.568 14.612 -1.455 1 0 ? H8 GTP 187 A 1 HETATM 41 H HN1 GTP . . . G 3 -4.43 15.259 -7.155 1 0 ? HN1 GTP 187 A 1 HETATM 42 H HN21 GTP . . . G 3 -4.061 18.66 -6.625 1 0 ? HN21 GTP 187 A 1 HETATM 43 H HN22 GTP . . . G 3 -4.635 17.384 -7.674 1 0 ? HN22 GTP 187 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 99 _model_server_stats.query_time_ms 6340 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 43 #