data_2KTQ # _model_server_result.job_id 2jpcjKGSsJOtNLH8TCDPSw _model_server_result.datetime_utc '2024-11-12 23:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ktq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 2KTQ # _exptl.entry_id 2KTQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2KTQ _cell.length_a 108.414 _cell.length_b 108.414 _cell.length_c 89.843 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KTQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A O3' DC 11 B DC 111 1_555 A P DOC 12 B DOC 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.608 ? metalc ? metalc1 E O3B DCT . A DCT 113 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.89 ? metalc ? metalc2 E O1G DCT . A DCT 113 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.675 ? metalc ? metalc3 E O2A DCT . A DCT 113 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc4 C O TYR 317 A TYR 611 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.706 ? metalc ? metalc5 C OD1 ASP 491 A ASP 785 1_555 D MG MG . A MG 901 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc6 D MG MG . A MG 901 1_555 H O HOH . A HOH 3030 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 B DG 101 1_555 B N3 DC 13 D DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 B DG 101 1_555 B O2 DC 13 D DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 B DG 101 1_555 B N4 DC 13 D DC 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DA 2 B DA 102 1_555 B N3 DT 12 D DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N6 DA 2 B DA 102 1_555 B O4 DT 12 D DT 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DC 3 B DC 103 1_555 B N1 DG 11 D DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N4 DC 3 B DC 103 1_555 B O6 DG 11 D DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O2 DC 3 B DC 103 1_555 B N2 DG 11 D DG 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N3 DC 4 B DC 104 1_555 B N1 DG 10 D DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N4 DC 4 B DC 104 1_555 B O6 DG 10 D DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O2 DC 4 B DC 104 1_555 B N2 DG 10 D DG 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 DA 5 B DA 105 1_555 B N3 DT 9 D DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N6 DA 5 B DA 105 1_555 B O4 DT 9 D DT 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 B DC 106 1_555 B N1 DG 8 D DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 B DC 106 1_555 B O6 DG 8 D DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 B DC 106 1_555 B N2 DG 8 D DG 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 7 B DG 107 1_555 B N3 DC 7 D DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 7 B DG 107 1_555 B O2 DC 7 D DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 7 B DG 107 1_555 B N4 DC 7 D DC 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DG 8 B DG 108 1_555 B N3 DC 6 D DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N2 DG 8 B DG 108 1_555 B O2 DC 6 D DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O6 DG 8 B DG 108 1_555 B N4 DC 6 D DC 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N3 DC 9 B DC 109 1_555 B N1 DG 5 D DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N4 DC 9 B DC 109 1_555 B O6 DG 5 D DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O2 DC 9 B DC 109 1_555 B N2 DG 5 D DG 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DG 10 B DG 110 1_555 B N3 DC 4 D DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N2 DG 10 B DG 110 1_555 B O2 DC 4 D DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O6 DG 10 B DG 110 1_555 B N4 DC 4 D DC 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N3 DC 11 B DC 111 1_555 B N1 DG 3 D DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N4 DC 11 B DC 111 1_555 B O6 DG 3 D DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A O2 DC 11 B DC 111 1_555 B N2 DG 3 D DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DOC 12 B DOC 112 1_555 B N1 DG 2 D DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N4 DOC 12 B DOC 112 1_555 B O6 DG 2 D DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A O2 DOC 12 B DOC 112 1_555 B N2 DG 2 D DG 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog35 B N2 DG 1 D DG 204 1_555 B N7 DG 3 D DG 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2KTQ _atom_sites.fract_transf_matrix[1][1] 0.009224 _atom_sites.fract_transf_matrix[1][2] 0.005325 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010651 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 901 901 MG MG . E 5 DCT A 1 113 113 DCT DCT . F 6 HOH B 1 3004 3004 HOH HOH . F 6 HOH B 2 3023 3023 HOH HOH . F 6 HOH B 3 3036 3036 HOH HOH . F 6 HOH B 4 3037 3037 HOH HOH . F 6 HOH B 5 3059 3059 HOH HOH . F 6 HOH B 6 3064 3064 HOH HOH . F 6 HOH B 7 3065 3065 HOH HOH . F 6 HOH B 8 3096 3096 HOH HOH . F 6 HOH B 9 3107 3107 HOH HOH . F 6 HOH B 10 3131 3131 HOH HOH . G 6 HOH D 1 3008 3008 HOH HOH . G 6 HOH D 2 3016 3016 HOH HOH . G 6 HOH D 3 3018 3018 HOH HOH . G 6 HOH D 4 3028 3028 HOH HOH . G 6 HOH D 5 3029 3029 HOH HOH . G 6 HOH D 6 3031 3031 HOH HOH . G 6 HOH D 7 3039 3039 HOH HOH . G 6 HOH D 8 3075 3075 HOH HOH . G 6 HOH D 9 3112 3112 HOH HOH . G 6 HOH D 10 3114 3114 HOH HOH . G 6 HOH D 11 3146 3146 HOH HOH . H 6 HOH A 1 3001 3001 HOH HOH . H 6 HOH A 2 3002 3002 HOH HOH . H 6 HOH A 3 3003 3003 HOH HOH . H 6 HOH A 4 3005 3005 HOH HOH . H 6 HOH A 5 3006 3006 HOH HOH . H 6 HOH A 6 3007 3007 HOH HOH . H 6 HOH A 7 3009 3009 HOH HOH . H 6 HOH A 8 3010 3010 HOH HOH . H 6 HOH A 9 3011 3011 HOH HOH . H 6 HOH A 10 3012 3012 HOH HOH . H 6 HOH A 11 3013 3013 HOH HOH . H 6 HOH A 12 3014 3014 HOH HOH . H 6 HOH A 13 3015 3015 HOH HOH . H 6 HOH A 14 3017 3017 HOH HOH . H 6 HOH A 15 3019 3019 HOH HOH . H 6 HOH A 16 3020 3020 HOH HOH . H 6 HOH A 17 3021 3021 HOH HOH . H 6 HOH A 18 3022 3022 HOH HOH . H 6 HOH A 19 3024 3024 HOH HOH . H 6 HOH A 20 3025 3025 HOH HOH . H 6 HOH A 21 3026 3026 HOH HOH . H 6 HOH A 22 3027 3027 HOH HOH . H 6 HOH A 23 3030 3030 HOH HOH . H 6 HOH A 24 3032 3032 HOH HOH . H 6 HOH A 25 3033 3033 HOH HOH . H 6 HOH A 26 3034 3034 HOH HOH . H 6 HOH A 27 3035 3035 HOH HOH . H 6 HOH A 28 3038 3038 HOH HOH . H 6 HOH A 29 3040 3040 HOH HOH . H 6 HOH A 30 3041 3041 HOH HOH . H 6 HOH A 31 3042 3042 HOH HOH . H 6 HOH A 32 3043 3043 HOH HOH . H 6 HOH A 33 3044 3044 HOH HOH . H 6 HOH A 34 3045 3045 HOH HOH . H 6 HOH A 35 3046 3046 HOH HOH . H 6 HOH A 36 3047 3047 HOH HOH . H 6 HOH A 37 3048 3048 HOH HOH . H 6 HOH A 38 3049 3049 HOH HOH . H 6 HOH A 39 3050 3050 HOH HOH . H 6 HOH A 40 3051 3051 HOH HOH . H 6 HOH A 41 3052 3052 HOH HOH . H 6 HOH A 42 3053 3053 HOH HOH . H 6 HOH A 43 3054 3054 HOH HOH . H 6 HOH A 44 3055 3055 HOH HOH . H 6 HOH A 45 3056 3056 HOH HOH . H 6 HOH A 46 3057 3057 HOH HOH . H 6 HOH A 47 3058 3058 HOH HOH . H 6 HOH A 48 3060 3060 HOH HOH . H 6 HOH A 49 3061 3061 HOH HOH . H 6 HOH A 50 3062 3062 HOH HOH . H 6 HOH A 51 3063 3063 HOH HOH . H 6 HOH A 52 3066 3066 HOH HOH . H 6 HOH A 53 3067 3067 HOH HOH . H 6 HOH A 54 3068 3068 HOH HOH . H 6 HOH A 55 3069 3069 HOH HOH . H 6 HOH A 56 3070 3070 HOH HOH . H 6 HOH A 57 3071 3071 HOH HOH . H 6 HOH A 58 3072 3072 HOH HOH . H 6 HOH A 59 3073 3073 HOH HOH . H 6 HOH A 60 3074 3074 HOH HOH . H 6 HOH A 61 3076 3076 HOH HOH . H 6 HOH A 62 3077 3077 HOH HOH . H 6 HOH A 63 3078 3078 HOH HOH . H 6 HOH A 64 3079 3079 HOH HOH . H 6 HOH A 65 3080 3080 HOH HOH . H 6 HOH A 66 3081 3081 HOH HOH . H 6 HOH A 67 3082 3082 HOH HOH . H 6 HOH A 68 3083 3083 HOH HOH . H 6 HOH A 69 3084 3084 HOH HOH . H 6 HOH A 70 3085 3085 HOH HOH . H 6 HOH A 71 3086 3086 HOH HOH . H 6 HOH A 72 3087 3087 HOH HOH . H 6 HOH A 73 3088 3088 HOH HOH . H 6 HOH A 74 3089 3089 HOH HOH . H 6 HOH A 75 3090 3090 HOH HOH . H 6 HOH A 76 3091 3091 HOH HOH . H 6 HOH A 77 3092 3092 HOH HOH . H 6 HOH A 78 3093 3093 HOH HOH . H 6 HOH A 79 3094 3094 HOH HOH . H 6 HOH A 80 3095 3095 HOH HOH . H 6 HOH A 81 3097 3097 HOH HOH . H 6 HOH A 82 3098 3098 HOH HOH . H 6 HOH A 83 3099 3099 HOH HOH . H 6 HOH A 84 3100 3100 HOH HOH . H 6 HOH A 85 3101 3101 HOH HOH . H 6 HOH A 86 3102 3102 HOH HOH . H 6 HOH A 87 3103 3103 HOH HOH . H 6 HOH A 88 3104 3104 HOH HOH . H 6 HOH A 89 3105 3105 HOH HOH . H 6 HOH A 90 3106 3106 HOH HOH . H 6 HOH A 91 3108 3108 HOH HOH . H 6 HOH A 92 3109 3109 HOH HOH . H 6 HOH A 93 3110 3110 HOH HOH . H 6 HOH A 94 3111 3111 HOH HOH . H 6 HOH A 95 3113 3113 HOH HOH . H 6 HOH A 96 3115 3115 HOH HOH . H 6 HOH A 97 3116 3116 HOH HOH . H 6 HOH A 98 3117 3117 HOH HOH . H 6 HOH A 99 3118 3118 HOH HOH . H 6 HOH A 100 3119 3119 HOH HOH . H 6 HOH A 101 3120 3120 HOH HOH . H 6 HOH A 102 3121 3121 HOH HOH . H 6 HOH A 103 3122 3122 HOH HOH . H 6 HOH A 104 3123 3123 HOH HOH . H 6 HOH A 105 3124 3124 HOH HOH . H 6 HOH A 106 3125 3125 HOH HOH . H 6 HOH A 107 3126 3126 HOH HOH . H 6 HOH A 108 3127 3127 HOH HOH . H 6 HOH A 109 3128 3128 HOH HOH . H 6 HOH A 110 3129 3129 HOH HOH . H 6 HOH A 111 3130 3130 HOH HOH . H 6 HOH A 112 3132 3132 HOH HOH . H 6 HOH A 113 3133 3133 HOH HOH . H 6 HOH A 114 3134 3134 HOH HOH . H 6 HOH A 115 3135 3135 HOH HOH . H 6 HOH A 116 3136 3136 HOH HOH . H 6 HOH A 117 3137 3137 HOH HOH . H 6 HOH A 118 3138 3138 HOH HOH . H 6 HOH A 119 3139 3139 HOH HOH . H 6 HOH A 120 3140 3140 HOH HOH . H 6 HOH A 121 3141 3141 HOH HOH . H 6 HOH A 122 3142 3142 HOH HOH . H 6 HOH A 123 3143 3143 HOH HOH . H 6 HOH A 124 3144 3144 HOH HOH . H 6 HOH A 125 3145 3145 HOH HOH . H 6 HOH A 126 3147 3147 HOH HOH . H 6 HOH A 127 3148 3148 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -3.73 _atom_site.Cartn_y 25.133 _atom_site.Cartn_z -0.411 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.93 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 901 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #