data_2KTZ # _model_server_result.job_id thWr6Iu7a3VD8S76bguLpw _model_server_result.datetime_utc '2024-11-26 01:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ktz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":39}' # _entry.id 2KTZ # _exptl.entry_id 2KTZ _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 317.429 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (7R)-7-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-7,8-dihydro-1H-furo[3,2-e]benzimidazol-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N1 G 1 A G 1 1_555 A N3 C 38 A C 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 G 1 A G 1 1_555 A O2 C 38 A C 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 G 1 A G 1 1_555 A N4 C 38 A C 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 2 1_555 A N3 C 37 A C 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 2 1_555 A O2 C 37 A C 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 2 1_555 A N4 C 37 A C 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 A 3 A A 3 1_555 A N3 U 36 A U 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 A 3 A A 3 1_555 A O4 U 36 A U 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 4 1_555 A N3 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 4 1_555 A O2 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 4 1_555 A N4 C 35 A C 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 5 1_555 A N3 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 5 1_555 A O2 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 5 1_555 A N4 C 34 A C 34 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog15 A N3 A 6 A A 6 1_555 A N3 U 9 A U 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 C 11 A C 11 1_555 A N1 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 C 11 A C 11 1_555 A O6 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 C 11 A C 11 1_555 A N2 G 33 A G 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 U 12 A U 12 1_555 A N1 A 32 A A 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 U 12 A U 12 1_555 A N6 A 32 A A 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N1 G 13 A G 13 1_555 A N3 C 31 A C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N2 G 13 A G 13 1_555 A O2 C 31 A C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O6 G 13 A G 13 1_555 A N4 C 31 A C 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog24 A N3 U 14 A U 14 1_555 A O6 G 30 A G 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog25 A O2 U 14 A U 14 1_555 A N1 G 30 A G 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N3 C 15 A C 15 1_555 A N1 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N4 C 15 A C 15 1_555 A O6 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A O2 C 15 A C 15 1_555 A N2 G 28 A G 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog29 A N3 U 16 A U 16 1_555 A N3 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog30 A O4 U 16 A U 16 1_555 A N4 C 27 A C 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog31 A N3 U 17 A U 17 1_555 A O2 U 26 A U 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog32 A O4 U 17 A U 17 1_555 A N3 U 26 A U 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A N3 C 18 A C 18 1_555 A N1 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N4 C 18 A C 18 1_555 A O6 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A O2 C 18 A C 18 1_555 A N2 G 25 A G 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N3 C 19 A C 19 1_555 A N1 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N4 C 19 A C 19 1_555 A O6 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O2 C 19 A C 19 1_555 A N2 G 24 A G 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-G MISPAIR' hydrog39 A O2 U 20 A U 20 1_555 A N1 G 23 A G 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C17 H27 N5 O' _chem_comp.formula_weight 317.429 _chem_comp.id ISH _chem_comp.mon_nstd_flag . _chem_comp.name (7R)-7-[(dimethylamino)methyl]-1-[3-(dimethylamino)propyl]-7,8-dihydro-1H-furo[3,2-e]benzimidazol-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C6 ISH sing 116 n y C2 C1 ISH doub 117 n y C2 C3 ISH sing 118 n y C3 C4 ISH doub 119 n y C4 N9 ISH sing 120 n y C4 C5 ISH sing 121 n y C5 C10 ISH sing 122 n n C6 C5 ISH doub 123 n y C6 O12 ISH sing 124 n n N7 C3 ISH sing 125 n y N7 C8 ISH doub 126 n y C8 N9 ISH sing 127 n y N9 CA1 ISH sing 128 n n C10 C11 ISH sing 129 n n C10 H10A ISH sing 130 n n C11 CA2 ISH sing 131 n n C11 H11 ISH sing 132 n n O12 C11 ISH sing 133 n n CA1 HA1 ISH sing 134 n n CA1 HA1A ISH sing 135 n n CA2 NP3 ISH sing 136 n n CA2 HA2 ISH sing 137 n n CA2 HA2A ISH sing 138 n n CB1 CA1 ISH sing 139 n n CB1 CG1 ISH sing 140 n n CB1 HB1A ISH sing 141 n n CD1 HD1A ISH sing 142 n n CD1 HD1B ISH sing 143 n n CE1 NP2 ISH sing 144 n n CE1 HE1A ISH sing 145 n n CE1 HE1B ISH sing 146 n n CG1 HG1 ISH sing 147 n n CG1 HG1A ISH sing 148 n n CG2 NP3 ISH sing 149 n n CG2 HG2A ISH sing 150 n n CG2 HG2B ISH sing 151 n n CG3 HG3 ISH sing 152 n n CG3 HG3A ISH sing 153 n n CG3 HG3B ISH sing 154 n n NP1 C8 ISH sing 155 n n NP1 HNPA ISH sing 156 n n NP2 CD1 ISH sing 157 n n NP2 CG1 ISH sing 158 n n NP3 CG3 ISH sing 159 n n H1 C1 ISH sing 160 n n H2 C2 ISH sing 161 n n H10 C10 ISH sing 162 n n HB1 CB1 ISH sing 163 n n HD1 CD1 ISH sing 164 n n HE1 CE1 ISH sing 165 n n HG2 CG2 ISH sing 166 n n HNP1 NP1 ISH sing 167 n n # _atom_sites.entry_id 2KTZ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id ISH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 39 _pdbx_nonpoly_scheme.auth_seq_num 39 _pdbx_nonpoly_scheme.pdb_mon_id ISH _pdbx_nonpoly_scheme.auth_mon_id ISH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ISH . . . B 2 8.964 -5.857 3.244 1 0 ? C1 ISH 39 A 1 HETATM 2 C C2 ISH . . . B 2 7.806 -6.432 2.717 1 0 ? C2 ISH 39 A 1 HETATM 3 C C3 ISH . . . B 2 6.565 -5.96 3.153 1 0 ? C3 ISH 39 A 1 HETATM 4 C C4 ISH . . . B 2 6.457 -4.936 4.06 1 0 ? C4 ISH 39 A 1 HETATM 5 C C5 ISH . . . B 2 7.607 -4.401 4.639 1 0 ? C5 ISH 39 A 1 HETATM 6 C C6 ISH . . . B 2 8.833 -4.862 4.212 1 0 ? C6 ISH 39 A 1 HETATM 7 N N7 ISH . . . B 2 5.369 -6.467 2.859 1 0 ? N7 ISH 39 A 1 HETATM 8 C C8 ISH . . . B 2 4.522 -5.731 3.605 1 0 ? C8 ISH 39 A 1 HETATM 9 N N9 ISH . . . B 2 5.155 -4.717 4.322 1 0 ? N9 ISH 39 A 1 HETATM 10 C C10 ISH . . . B 2 7.803 -3.499 5.833 1 0 ? C10 ISH 39 A 1 HETATM 11 C C11 ISH . . . B 2 9.332 -3.61 6.09 1 0 ? C11 ISH 39 A 1 HETATM 12 O O12 ISH . . . B 2 9.858 -4.322 4.932 1 0 ? O12 ISH 39 A 1 HETATM 13 C CA1 ISH . . . B 2 4.573 -3.5 4.922 1 0 ? CA1 ISH 39 A 1 HETATM 14 C CA2 ISH . . . B 2 10.097 -2.277 6.25 1 0 ? CA2 ISH 39 A 1 HETATM 15 C CB1 ISH . . . B 2 3.355 -2.903 4.174 1 0 ? CB1 ISH 39 A 1 HETATM 16 C CD1 ISH . . . B 2 0.605 -1.398 4.904 1 0 ? CD1 ISH 39 A 1 HETATM 17 C CE1 ISH . . . B 2 1.795 0.558 4.017 1 0 ? CE1 ISH 39 A 1 HETATM 18 C CG1 ISH . . . B 2 3.073 -1.456 4.639 1 0 ? CG1 ISH 39 A 1 HETATM 19 C CG2 ISH . . . B 2 11.542 -3.069 8.152 1 0 ? CG2 ISH 39 A 1 HETATM 20 C CG3 ISH . . . B 2 12.371 -3.195 5.801 1 0 ? CG3 ISH 39 A 1 HETATM 21 N NP1 ISH . . . B 2 3.122 -6.096 3.533 1 0 ? NP1 ISH 39 A 1 HETATM 22 N NP2 ISH . . . B 2 1.771 -0.953 4.049 1 0 ? NP2 ISH 39 A 1 HETATM 23 N NP3 ISH . . . B 2 11.522 -2.457 6.774 1 0 ? NP3 ISH 39 A 1 HETATM 24 H H1 ISH . . . B 2 9.941 -6.231 2.943 1 0 ? H1 ISH 39 A 1 HETATM 25 H H2 ISH . . . B 2 7.893 -7.265 2.025 1 0 ? H2 ISH 39 A 1 HETATM 26 H H10 ISH . . . B 2 7.251 -3.891 6.691 1 0 ? H10 ISH 39 A 1 HETATM 27 H H11 ISH . . . B 2 9.451 -4.225 6.98 1 0 ? H11 ISH 39 A 1 HETATM 28 H HA1 ISH . . . B 2 5.35 -2.733 4.943 1 0 ? HA1 ISH 39 A 1 HETATM 29 H HA2 ISH . . . B 2 9.58 -1.626 6.954 1 0 ? HA2 ISH 39 A 1 HETATM 30 H HB1 ISH . . . B 2 3.535 -2.904 3.096 1 0 ? HB1 ISH 39 A 1 HETATM 31 H HD1 ISH . . . B 2 0.742 -1.019 5.919 1 0 ? HD1 ISH 39 A 1 HETATM 32 H HE1 ISH . . . B 2 0.859 0.922 3.586 1 0 ? HE1 ISH 39 A 1 HETATM 33 H HG1 ISH . . . B 2 3.874 -0.791 4.305 1 0 ? HG1 ISH 39 A 1 HETATM 34 H HG2 ISH . . . B 2 11.111 -4.07 8.116 1 0 ? HG2 ISH 39 A 1 HETATM 35 H HG3 ISH . . . B 2 12.318 -2.656 4.854 1 0 ? HG3 ISH 39 A 1 HETATM 36 H HNP1 ISH . . . B 2 2.64 -5.553 2.809 1 0 ? HNP1 ISH 39 A 1 HETATM 37 H H10A ISH . . . B 2 7.474 -2.474 5.67 1 0 ? H10A ISH 39 A 1 HETATM 38 H HA1A ISH . . . B 2 4.295 -3.715 5.959 1 0 ? HA1A ISH 39 A 1 HETATM 39 H HA2A ISH . . . B 2 10.165 -1.755 5.292 1 0 ? HA2A ISH 39 A 1 HETATM 40 H HB1A ISH . . . B 2 2.478 -3.524 4.368 1 0 ? HB1A ISH 39 A 1 HETATM 41 H HD1A ISH . . . B 2 -0.317 -1 4.475 1 0 ? HD1A ISH 39 A 1 HETATM 42 H HD1B ISH . . . B 2 0.563 -2.49 4.908 1 0 ? HD1B ISH 39 A 1 HETATM 43 H HE1A ISH . . . B 2 1.905 0.933 5.038 1 0 ? HE1A ISH 39 A 1 HETATM 44 H HE1B ISH . . . B 2 2.639 0.892 3.407 1 0 ? HE1B ISH 39 A 1 HETATM 45 H HG1A ISH . . . B 2 2.996 -1.39 5.729 1 0 ? HG1A ISH 39 A 1 HETATM 46 H HG2A ISH . . . B 2 12.578 -3.102 8.485 1 0 ? HG2A ISH 39 A 1 HETATM 47 H HG2B ISH . . . B 2 10.96 -2.426 8.817 1 0 ? HG2B ISH 39 A 1 HETATM 48 H HG3A ISH . . . B 2 13.391 -3.204 6.18 1 0 ? HG3A ISH 39 A 1 HETATM 49 H HG3B ISH . . . B 2 11.972 -4.195 5.675 1 0 ? HG3B ISH 39 A 1 HETATM 50 H HNPA ISH . . . B 2 2.688 -6.009 4.463 1 0 ? HNPA ISH 39 A 1 HETATM 51 H HCP1 ISH . . . B 2 3.089 -7.099 3.303 1 0 ? HCP1 ISH 39 A 1 HETATM 52 H HP2 ISH . . . B 2 1.643 -1.345 3.081 1 0 ? HP2 ISH 39 A 1 HETATM 53 H HP3 ISH . . . B 2 11.941 -1.498 6.846 1 0 ? HP3 ISH 39 A 1 # _model_server_stats.io_time_ms 61 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 2723 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 53 #