data_2KVY # _model_server_result.job_id M3KXWedob1qu7wDQ1SBNIw _model_server_result.datetime_utc '2024-10-10 04:22:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2kvy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":26}' # _entry.id 2KVY # _exptl.entry_id 2KVY _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 468.509 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2KVY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2KVY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog TYPE_6_PAIR hydrog1 A N7 DG 2 A DG 2 1_555 C N2 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A O6 DG 2 A DG 2 1_555 C N1 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N1 DG 2 A DG 2 1_555 D O6 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A N2 DG 2 A DG 2 1_555 D N7 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N7 DG 3 A DG 3 1_555 C N2 DG 3 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A O6 DG 3 A DG 3 1_555 C N1 DG 3 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N1 DG 3 A DG 3 1_555 D O6 DG 3 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A N2 DG 3 A DG 3 1_555 D N7 DG 3 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N7 DG 4 A DG 4 1_555 C N2 DG 4 C DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A O6 DG 4 A DG 4 1_555 C N1 DG 4 C DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N1 DG 4 A DG 4 1_555 D O6 DG 4 D DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A N2 DG 4 A DG 4 1_555 D N7 DG 4 D DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog13 A N1 DG 4 A DG 4 1_555 D O6 DG 5 D DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog14 A O6 DG 5 A DG 5 1_555 C N2 DG 5 C DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 B N1 DG 2 B DG 8 1_555 C O6 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 B N2 DG 2 B DG 8 1_555 C N7 DG 2 C DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 B N7 DG 2 B DG 8 1_555 D N2 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 B O6 DG 2 B DG 8 1_555 D N1 DG 2 D DG 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 B N1 DG 3 B DG 9 1_555 C O6 DG 3 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 B N2 DG 3 B DG 9 1_555 C N7 DG 3 C DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 B N7 DG 3 B DG 9 1_555 D N2 DG 3 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 B O6 DG 3 B DG 9 1_555 D N1 DG 3 D DG 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog23 B O6 DG 3 B DG 9 1_555 D N1 DG 4 D DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog24 B N1 DG 4 B DG 10 1_555 C O6 DG 4 C DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 B N7 DG 4 B DG 10 1_555 D N2 DG 4 D DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 B O6 DG 4 B DG 10 1_555 D N1 DG 4 D DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog27 B O6 DG 4 B DG 10 1_555 D N1 DG 5 D DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog28 B N1 DG 5 B DG 11 1_555 C O6 DG 5 C DG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DT MISPAIR' hydrog29 B N2 DG 5 B DG 11 1_555 C O2 DT 6 C DT 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog30 B O6 DG 5 B DG 11 1_555 D N2 DG 5 D DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C22 H28 N8 O4' _chem_comp.formula_weight 468.509 _chem_comp.id KVY _chem_comp.mon_nstd_flag . _chem_comp.name 4-amino-1-methyl-N-{1-methyl-5-[(1-methyl-5-{[3-(methylamino)-3-oxopropyl]carbamoyl}-1H-pyrrol-3-yl)carbamoyl]-1H-pyrrol-3-yl}-1H-pyrrole-2-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag HNA N KVY sing 77 n n HN N KVY sing 78 n n N C1 KVY sing 79 n n C1 C2 KVY sing 80 n y C1 C4 KVY doub 81 n y C4 N1 KVY sing 82 n y C3 N1 KVY sing 83 n y N1 C5 KVY sing 84 n n C6 O1 KVY doub 85 n n H2 C2 KVY sing 86 n n C2 C3 KVY doub 87 n y HN2 N2 KVY sing 88 n n N2 C7 KVY sing 89 n n N2 C6 KVY sing 90 n n C12 O2 KVY doub 91 n n C3 C6 KVY sing 92 n n C9 N3 KVY sing 93 n y N3 C10 KVY sing 94 n y N3 C11 KVY sing 95 n n O3 C18 KVY doub 96 n n C4 H4 KVY sing 97 n n C13 N4 KVY sing 98 n n HN4 N4 KVY sing 99 n n N4 C12 KVY sing 100 n n O4 C21 KVY doub 101 n n H5B C5 KVY sing 102 n n H5 C5 KVY sing 103 n n C5 H5A KVY sing 104 n n C15 N5 KVY sing 105 n y C17 N5 KVY sing 106 n n N5 C16 KVY sing 107 n y C19 N6 KVY sing 108 n n N6 HN6 KVY sing 109 n n N6 C18 KVY sing 110 n n C8 C7 KVY sing 111 n y C7 C10 KVY doub 112 n y C22 N7 KVY sing 113 n n C21 N7 KVY sing 114 n n N7 HN7 KVY sing 115 n n H8 C8 KVY sing 116 n n C8 C9 KVY doub 117 n y C12 C9 KVY sing 118 n n C10 H10 KVY sing 119 n n H11B C11 KVY sing 120 n n C11 H11 KVY sing 121 n n C11 H11A KVY sing 122 n n C14 C13 KVY sing 123 n y C13 C16 KVY doub 124 n y C15 C14 KVY doub 125 n y H14 C14 KVY sing 126 n n C18 C15 KVY sing 127 n n C16 H16 KVY sing 128 n n H17A C17 KVY sing 129 n n C17 H17B KVY sing 130 n n C17 H17 KVY sing 131 n n H19 C19 KVY sing 132 n n H19A C19 KVY sing 133 n n C19 C20 KVY sing 134 n n C21 C20 KVY sing 135 n n H20 C20 KVY sing 136 n n C20 H20A KVY sing 137 n n H22 C22 KVY sing 138 n n C22 H22B KVY sing 139 n n C22 H22A KVY sing 140 n n # _atom_sites.entry_id 2KVY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 KVY A 1 27 27 KVY KVY . F 2 KVY B 1 28 28 KVY KVY . G 2 KVY C 1 25 25 KVY KVY . H 2 KVY D 1 26 26 KVY KVY . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N KVY . . . H 2 31.412 23.097 30.33 1 0 ? N KVY 26 D 1 HETATM 2 C C1 KVY . . . H 2 32.38 22.198 30.031 1 0 ? C1 KVY 26 D 1 HETATM 3 N N1 KVY . . . H 2 33.979 21.006 29.063 1 0 ? N1 KVY 26 D 1 HETATM 4 O O1 KVY . . . H 2 35.667 18.972 30.394 1 0 ? O1 KVY 26 D 1 HETATM 5 C C2 KVY . . . H 2 32.898 21.322 31.005 1 0 ? C2 KVY 26 D 1 HETATM 6 N N2 KVY . . . H 2 34.414 19.286 32.242 1 0 ? N2 KVY 26 D 1 HETATM 7 O O2 KVY . . . H 2 36.293 16.194 36.993 1 0 ? O2 KVY 26 D 1 HETATM 8 C C3 KVY . . . H 2 33.883 20.589 30.383 1 0 ? C3 KVY 26 D 1 HETATM 9 N N3 KVY . . . H 2 36.426 17.068 34.159 1 0 ? N3 KVY 26 D 1 HETATM 10 O O3 KVY . . . H 2 31.498 16.863 42.274 1 0 ? O3 KVY 26 D 1 HETATM 11 C C4 KVY . . . H 2 33.016 21.975 28.845 1 0 ? C4 KVY 26 D 1 HETATM 12 N N4 KVY . . . H 2 34.394 17.396 37.163 1 0 ? N4 KVY 26 D 1 HETATM 13 O O4 KVY . . . H 2 31.103 19.048 44.938 1 0 ? O4 KVY 26 D 1 HETATM 14 C C5 KVY . . . H 2 34.935 20.558 28.051 1 0 ? C5 KVY 26 D 1 HETATM 15 N N5 KVY . . . H 2 33.844 16.457 40.538 1 0 ? N5 KVY 26 D 1 HETATM 16 C C6 KVY . . . H 2 34.757 19.543 30.965 1 0 ? C6 KVY 26 D 1 HETATM 17 N N6 KVY . . . H 2 30.996 18.673 41.08 1 0 ? N6 KVY 26 D 1 HETATM 18 C C7 KVY . . . H 2 35.011 18.453 33.175 1 0 ? C7 KVY 26 D 1 HETATM 19 N N7 KVY . . . H 2 32.734 19.899 43.694 1 0 ? N7 KVY 26 D 1 HETATM 20 C C8 KVY . . . H 2 34.538 18.247 34.486 1 0 ? C8 KVY 26 D 1 HETATM 21 C C9 KVY . . . H 2 35.444 17.4 35.084 1 0 ? C9 KVY 26 D 1 HETATM 22 C C10 KVY . . . H 2 36.161 17.74 32.979 1 0 ? C10 KVY 26 D 1 HETATM 23 C C11 KVY . . . H 2 37.548 16.151 34.349 1 0 ? C11 KVY 26 D 1 HETATM 24 C C12 KVY . . . H 2 35.455 16.919 36.485 1 0 ? C12 KVY 26 D 1 HETATM 25 C C13 KVY . . . H 2 34.012 17.232 38.481 1 0 ? C13 KVY 26 D 1 HETATM 26 C C14 KVY . . . H 2 32.896 17.868 39.062 1 0 ? C14 KVY 26 D 1 HETATM 27 C C15 KVY . . . H 2 32.794 17.345 40.324 1 0 ? C15 KVY 26 D 1 HETATM 28 C C16 KVY . . . H 2 34.599 16.387 39.381 1 0 ? C16 KVY 26 D 1 HETATM 29 C C17 KVY . . . H 2 34.177 15.765 41.783 1 0 ? C17 KVY 26 D 1 HETATM 30 C C18 KVY . . . H 2 31.735 17.578 41.323 1 0 ? C18 KVY 26 D 1 HETATM 31 C C19 KVY . . . H 2 29.938 19.175 41.97 1 0 ? C19 KVY 26 D 1 HETATM 32 C C20 KVY . . . H 2 30.454 20.234 42.96 1 0 ? C20 KVY 26 D 1 HETATM 33 C C21 KVY . . . H 2 31.438 19.667 43.949 1 0 ? C21 KVY 26 D 1 HETATM 34 C C22 KVY . . . H 2 33.839 19.374 44.499 1 0 ? C22 KVY 26 D 1 HETATM 35 H HN KVY . . . H 2 31.063 23.196 31.288 1 0 ? HN KVY 26 D 1 HETATM 36 H HNA KVY . . . H 2 30.872 23.586 29.613 1 0 ? HNA KVY 26 D 1 HETATM 37 H HN7 KVY . . . H 2 32.965 20.49 42.909 1 0 ? HN7 KVY 26 D 1 HETATM 38 H HN2 KVY . . . H 2 33.582 19.775 32.511 1 0 ? HN2 KVY 26 D 1 HETATM 39 H HN4 KVY . . . H 2 33.793 17.956 36.579 1 0 ? HN4 KVY 26 D 1 HETATM 40 H HN6 KVY . . . H 2 31.233 19.216 40.271 1 0 ? HN6 KVY 26 D 1 HETATM 41 H H2 KVY . . . H 2 32.571 21.264 32.039 1 0 ? H2 KVY 26 D 1 HETATM 42 H H4 KVY . . . H 2 32.894 22.445 27.878 1 0 ? H4 KVY 26 D 1 HETATM 43 H H8 KVY . . . H 2 33.647 18.688 34.929 1 0 ? H8 KVY 26 D 1 HETATM 44 H H10 KVY . . . H 2 36.809 17.657 32.113 1 0 ? H10 KVY 26 D 1 HETATM 45 H H11 KVY . . . H 2 38.197 16.526 35.142 1 0 ? H11 KVY 26 D 1 HETATM 46 H H11A KVY . . . H 2 37.166 15.166 34.628 1 0 ? H11A KVY 26 D 1 HETATM 47 H H11B KVY . . . H 2 38.12 16.066 33.422 1 0 ? H11B KVY 26 D 1 HETATM 48 H H14 KVY . . . H 2 32.222 18.564 38.568 1 0 ? H14 KVY 26 D 1 HETATM 49 H H16 KVY . . . H 2 35.465 15.74 39.293 1 0 ? H16 KVY 26 D 1 HETATM 50 H H17 KVY . . . H 2 35.239 15.518 41.793 1 0 ? H17 KVY 26 D 1 HETATM 51 H H17A KVY . . . H 2 33.965 16.411 42.639 1 0 ? H17A KVY 26 D 1 HETATM 52 H H17B KVY . . . H 2 33.588 14.848 41.862 1 0 ? H17B KVY 26 D 1 HETATM 53 H H19 KVY . . . H 2 29.15 19.627 41.359 1 0 ? H19 KVY 26 D 1 HETATM 54 H H19A KVY . . . H 2 29.492 18.344 42.525 1 0 ? H19A KVY 26 D 1 HETATM 55 H H20 KVY . . . H 2 29.609 20.63 43.523 1 0 ? H20 KVY 26 D 1 HETATM 56 H H20A KVY . . . H 2 30.892 21.074 42.422 1 0 ? H20A KVY 26 D 1 HETATM 57 H H22 KVY . . . H 2 34.789 19.645 44.032 1 0 ? H22 KVY 26 D 1 HETATM 58 H H22A KVY . . . H 2 33.768 18.285 44.563 1 0 ? H22A KVY 26 D 1 HETATM 59 H H22B KVY . . . H 2 33.795 19.804 45.503 1 0 ? H22B KVY 26 D 1 HETATM 60 H H5 KVY . . . H 2 34.931 19.467 27.996 1 0 ? H5 KVY 26 D 1 HETATM 61 H H5A KVY . . . H 2 35.934 20.906 28.322 1 0 ? H5A KVY 26 D 1 HETATM 62 H H5B KVY . . . H 2 34.661 20.966 27.076 1 0 ? H5B KVY 26 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 2522 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 62 #