data_2L0X # _model_server_result.job_id 1f47K5rXuohHM5QCVJJkhQ _model_server_result.datetime_utc '2024-10-10 11:20:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2l0x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":186}' # _entry.id 2L0X # _exptl.entry_id 2L0X _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 443.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 15 A SER 20 1_555 B MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc2 A OG1 THR 33 A THR 38 1_555 B MG MG . A MG 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 B MG MG . A MG 185 1_555 C O1B GDP . A GDP 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 70 n n PB O2B GDP sing 71 n n PB O3B GDP sing 72 n n PB O3A GDP sing 73 n n O2B HOB2 GDP sing 74 n n O3B HOB3 GDP sing 75 n n O3A PA GDP sing 76 n n PA O1A GDP doub 77 n n PA O2A GDP sing 78 n n PA O5' GDP sing 79 n n O2A HOA2 GDP sing 80 n n O5' C5' GDP sing 81 n n C5' C4' GDP sing 82 n n C5' H5' GDP sing 83 n n C5' "H5''" GDP sing 84 n n C4' O4' GDP sing 85 n n C4' C3' GDP sing 86 n n C4' H4' GDP sing 87 n n O4' C1' GDP sing 88 n n C3' O3' GDP sing 89 n n C3' C2' GDP sing 90 n n C3' H3' GDP sing 91 n n O3' HO3' GDP sing 92 n n C2' O2' GDP sing 93 n n C2' C1' GDP sing 94 n n C2' H2' GDP sing 95 n n O2' HO2' GDP sing 96 n n C1' N9 GDP sing 97 n n C1' H1' GDP sing 98 n n N9 C8 GDP sing 99 n y N9 C4 GDP sing 100 n y C8 N7 GDP doub 101 n y C8 H8 GDP sing 102 n n N7 C5 GDP sing 103 n y C5 C6 GDP sing 104 n n C5 C4 GDP doub 105 n y C6 O6 GDP doub 106 n n C6 N1 GDP sing 107 n n N1 C2 GDP sing 108 n n N1 HN1 GDP sing 109 n n C2 N2 GDP sing 110 n n C2 N3 GDP doub 111 n n N2 HN21 GDP sing 112 n n N2 HN22 GDP sing 113 n n N3 C4 GDP sing 114 n n # _atom_sites.entry_id 2L0X _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 185 185 MG MG . C 3 GDP A 1 186 186 GDP GDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . C 3 12.537 -1.663 -6.519 1 20 ? PB GDP 186 A 1 HETATM 2 O O1B GDP . . . C 3 11.289 -2.131 -7.18 1 20 ? O1B GDP 186 A 1 HETATM 3 O O2B GDP . . . C 3 12.159 -0.533 -5.455 1 20 ? O2B GDP 186 A 1 HETATM 4 O O3B GDP . . . C 3 13.543 -0.942 -7.54 1 20 ? O3B GDP 186 A 1 HETATM 5 O O3A GDP . . . C 3 13.344 -2.723 -5.69 1 20 ? O3A GDP 186 A 1 HETATM 6 P PA GDP . . . C 3 13.428 -4.137 -6.394 1 20 ? PA GDP 186 A 1 HETATM 7 O O1A GDP . . . C 3 12.436 -5.035 -5.764 1 20 ? O1A GDP 186 A 1 HETATM 8 O O2A GDP . . . C 3 13.133 -3.976 -7.961 1 20 ? O2A GDP 186 A 1 HETATM 9 O O5' GDP . . . C 3 14.956 -4.655 -6.27 1 20 ? O5' GDP 186 A 1 HETATM 10 C C5' GDP . . . C 3 16.019 -3.782 -5.825 1 20 ? C5' GDP 186 A 1 HETATM 11 C C4' GDP . . . C 3 16.517 -4.137 -4.415 1 20 ? C4' GDP 186 A 1 HETATM 12 O O4' GDP . . . C 3 15.413 -4.455 -3.547 1 20 ? O4' GDP 186 A 1 HETATM 13 C C3' GDP . . . C 3 17.447 -5.362 -4.376 1 20 ? C3' GDP 186 A 1 HETATM 14 O O3' GDP . . . C 3 18.736 -4.945 -3.897 1 20 ? O3' GDP 186 A 1 HETATM 15 C C2' GDP . . . C 3 16.774 -6.285 -3.356 1 20 ? C2' GDP 186 A 1 HETATM 16 O O2' GDP . . . C 3 17.718 -6.902 -2.47 1 20 ? O2' GDP 186 A 1 HETATM 17 C C1' GDP . . . C 3 15.962 -5.301 -2.537 1 20 ? C1' GDP 186 A 1 HETATM 18 N N9 GDP . . . C 3 14.932 -5.994 -1.722 1 20 ? N9 GDP 186 A 1 HETATM 19 C C8 GDP . . . C 3 13.695 -6.309 -2.116 1 20 ? C8 GDP 186 A 1 HETATM 20 N N7 GDP . . . C 3 12.995 -6.755 -1.069 1 20 ? N7 GDP 186 A 1 HETATM 21 C C5 GDP . . . C 3 13.83 -6.889 -0.05 1 20 ? C5 GDP 186 A 1 HETATM 22 C C6 GDP . . . C 3 13.701 -7.379 1.247 1 20 ? C6 GDP 186 A 1 HETATM 23 O O6 GDP . . . C 3 12.632 -7.834 1.661 1 20 ? O6 GDP 186 A 1 HETATM 24 N N1 GDP . . . C 3 14.805 -7.357 2.111 1 20 ? N1 GDP 186 A 1 HETATM 25 C C2 GDP . . . C 3 16.042 -6.866 1.639 1 20 ? C2 GDP 186 A 1 HETATM 26 N N2 GDP . . . C 3 17.098 -6.832 2.438 1 20 ? N2 GDP 186 A 1 HETATM 27 N N3 GDP . . . C 3 16.146 -6.429 0.365 1 20 ? N3 GDP 186 A 1 HETATM 28 C C4 GDP . . . C 3 15.076 -6.411 -0.462 1 20 ? C4 GDP 186 A 1 HETATM 29 H H5' GDP . . . C 3 15.685 -2.841 -5.825 1 20 ? H5' GDP 186 A 1 HETATM 30 H "H5''" GDP . . . C 3 16.783 -3.858 -6.47 1 20 ? "H5''" GDP 186 A 1 HETATM 31 H H4' GDP . . . C 3 17.021 -3.323 -4.128 1 20 ? H4' GDP 186 A 1 HETATM 32 H H3' GDP . . . C 3 17.556 -5.837 -5.253 1 20 ? H3' GDP 186 A 1 HETATM 33 H HO3' GDP . . . C 3 18.614 -4.341 -3.103 1 20 ? HO3' GDP 186 A 1 HETATM 34 H H2' GDP . . . C 3 16.243 -7.012 -3.797 1 20 ? H2' GDP 186 A 1 HETATM 35 H HO2' GDP . . . C 3 18.091 -7.719 -2.886 1 20 ? HO2' GDP 186 A 1 HETATM 36 H H1' GDP . . . C 3 16.538 -4.757 -1.894 1 20 ? H1' GDP 186 A 1 HETATM 37 H H8 GDP . . . C 3 13.347 -6.222 -3.049 1 20 ? H8 GDP 186 A 1 HETATM 38 H HN1 GDP . . . C 3 14.721 -7.682 3.046 1 20 ? HN1 GDP 186 A 1 HETATM 39 H HN21 GDP . . . C 3 17.032 -7.153 3.38 1 20 ? HN21 GDP 186 A 1 HETATM 40 H HN22 GDP . . . C 3 17.969 -6.482 2.096 1 20 ? HN22 GDP 186 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 69 _model_server_stats.query_time_ms 5536 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #