data_2L8R
#
_model_server_result.job_id            xrF27LHPmXztKylH5LcHuw 
_model_server_result.datetime_utc      '2024-11-15 14:54:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2l8r 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":186}' 
#
_entry.id    2L8R 
#
_exptl.entry_id    2L8R 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              559.316 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE-5-DIPHOSPHORIBOSE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C15 H23 N5 O14 P2' 
_chem_comp.formula_weight    559.316 
_chem_comp.id                APR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE-5-DIPHOSPHORIBOSE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 APR sing 13 n y 
N1 C6 APR doub 14 n y 
C2 N3 APR doub 15 n y 
C2 H2 APR sing 16 n n 
N3 C4 APR sing 17 n y 
C4 C5 APR doub 18 n y 
C4 N9 APR sing 19 n y 
C5 C6 APR sing 20 n y 
C5 N7 APR sing 21 n y 
C6 N6 APR sing 22 n n 
N6 H61 APR sing 23 n n 
N6 H62 APR sing 24 n n 
N7 C8 APR doub 25 n y 
C8 N9 APR sing 26 n y 
C8 H8 APR sing 27 n n 
N9 C1' APR sing 28 n n 
C1' C2' APR sing 29 n n 
C1' O4' APR sing 30 n n 
C1' "H'1" APR sing 31 n n 
C2' O2' APR sing 32 n n 
C2' C3' APR sing 33 n n 
C2' "H'2" APR sing 34 n n 
O2' "HO'2" APR sing 35 n n 
C3' O3' APR sing 36 n n 
C3' C4' APR sing 37 n n 
C3' "H'3" APR sing 38 n n 
O3' "HO'3" APR sing 39 n n 
O4' C4' APR sing 40 n n 
C4' C5' APR sing 41 n n 
C4' "H'4" APR sing 42 n n 
C5' O5' APR sing 43 n n 
C5' "H5'1" APR sing 44 n n 
C5' "H5'2" APR sing 45 n n 
O5' PA APR sing 46 n n 
PA O1A APR doub 47 n n 
PA O2A APR sing 48 n n 
PA O3A APR sing 49 n n 
O2A HOA2 APR sing 50 n n 
O3A PB APR sing 51 n n 
PB O1B APR doub 52 n n 
PB O2B APR sing 53 n n 
PB O5D APR sing 54 n n 
O2B HOB2 APR sing 55 n n 
O5D C5D APR sing 56 n n 
C5D C4D APR sing 57 n n 
C5D H5R1 APR sing 58 n n 
C5D H5R2 APR sing 59 n n 
O4D C1D APR sing 60 n n 
O4D C4D APR sing 61 n n 
O1D C1D APR sing 62 n n 
O1D HOR1 APR sing 63 n n 
C1D C2D APR sing 64 n n 
C1D "HR'1" APR sing 65 n n 
O2D C2D APR sing 66 n n 
O2D HOR2 APR sing 67 n n 
C2D C3D APR sing 68 n n 
C2D "HR'2" APR sing 69 n n 
O3D C3D APR sing 70 n n 
O3D HOR3 APR sing 71 n n 
C3D C4D APR sing 72 n n 
C3D "HR'3" APR sing 73 n n 
C4D "HR'4" APR sing 74 n n 
#
_atom_sites.entry_id                     2L8R 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          B 
_pdbx_nonpoly_scheme.entity_id        2 
_pdbx_nonpoly_scheme.mon_id           APR 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      186 
_pdbx_nonpoly_scheme.auth_seq_num     186 
_pdbx_nonpoly_scheme.pdb_mon_id       APR 
_pdbx_nonpoly_scheme.auth_mon_id      APR 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 APR . . . B 2 0.836 0.943 -11.243 1 40.42 ? N1 APR 186 A 1 
HETATM 2 C C2 APR . . . B 2 -0.271 0.202 -11.136 1 43.35 ? C2 APR 186 A 1 
HETATM 3 N N3 APR . . . B 2 -0.218 -1.116 -11.239 1 45.24 ? N3 APR 186 A 1 
HETATM 4 C C4 APR . . . B 2 0.948 -1.738 -11.452 1 1.4 ? C4 APR 186 A 1 
HETATM 5 C C5 APR . . . B 2 2.095 -1.011 -11.565 1 3.45 ? C5 APR 186 A 1 
HETATM 6 C C6 APR . . . B 2 2.027 0.36 -11.458 1 54.52 ? C6 APR 186 A 1 
HETATM 7 N N6 APR . . . B 2 3.122 1.095 -11.566 1 2.33 ? N6 APR 186 A 1 
HETATM 8 N N7 APR . . . B 2 3.099 -1.856 -11.769 1 4.22 ? N7 APR 186 A 1 
HETATM 9 C C8 APR . . . B 2 2.59 -3.092 -11.789 1 4.32 ? C8 APR 186 A 1 
HETATM 10 N N9 APR . . . B 2 1.253 -3.004 -11.6 1 20.13 ? N9 APR 186 A 1 
HETATM 11 C C1' APR . . . B 2 0.244 -4.137 -11.598 1 34.42 ? C1' APR 186 A 1 
HETATM 12 C C2' APR . . . B 2 0.961 -5.497 -11.956 1 51.4 ? C2' APR 186 A 1 
HETATM 13 O O2' APR . . . B 2 0.474 -6.002 -13.151 1 50.41 ? O2' APR 186 A 1 
HETATM 14 C C3' APR . . . B 2 0.579 -6.418 -10.774 1 52.54 ? C3' APR 186 A 1 
HETATM 15 O O3' APR . . . B 2 -0.513 -7.22 -11.097 1 13.41 ? O3' APR 186 A 1 
HETATM 16 O O4' APR . . . B 2 -0.403 -4.282 -10.329 1 14.42 ? O4' APR 186 A 1 
HETATM 17 C C4' APR . . . B 2 0.205 -5.39 -9.662 1 25.43 ? C4' APR 186 A 1 
HETATM 18 C C5' APR . . . B 2 1.471 -4.989 -8.875 1 43.04 ? C5' APR 186 A 1 
HETATM 19 O O5' APR . . . B 2 1.44 -5.541 -7.547 1 0.31 ? O5' APR 186 A 1 
HETATM 20 P PA APR . . . B 2 2.289 -6.873 -7.206 1 54.3 ? PA APR 186 A 1 
HETATM 21 O O1A APR . . . B 2 3.76 -6.623 -7.098 1 53.12 ? O1A APR 186 A 1 
HETATM 22 O O2A APR . . . B 2 1.975 -7.93 -8.393 1 21.33 ? O2A APR 186 A 1 
HETATM 23 O O3A APR . . . B 2 1.683 -7.501 -5.854 1 2.51 ? O3A APR 186 A 1 
HETATM 24 P PB APR . . . B 2 2.43 -7.269 -4.442 1 1.32 ? PB APR 186 A 1 
HETATM 25 O O1B APR . . . B 2 1.698 -7.831 -3.266 1 40.34 ? O1B APR 186 A 1 
HETATM 26 O O2B APR . . . B 2 2.647 -5.671 -4.276 1 63.41 ? O2B APR 186 A 1 
HETATM 27 O O5D APR . . . B 2 3.895 -7.899 -4.58 1 73.03 ? O5D APR 186 A 1 
HETATM 28 C C5D APR . . . B 2 4.789 -7.86 -3.469 1 70.13 ? C5D APR 186 A 1 
HETATM 29 O O4D APR . . . B 2 6.516 -9.4 -4.338 1 10.33 ? O4D APR 186 A 1 
HETATM 30 O O1D APR . . . B 2 7.653 -7.298 -4.228 1 64.31 ? O1D APR 186 A 1 
HETATM 31 C C1D APR . . . B 2 7.696 -8.72 -3.91 1 70.54 ? C1D APR 186 A 1 
HETATM 32 O O2D APR . . . B 2 8.628 -9.987 -2.032 1 15.33 ? O2D APR 186 A 1 
HETATM 33 C C2D APR . . . B 2 7.793 -8.914 -2.349 1 13.21 ? C2D APR 186 A 1 
HETATM 34 O O3D APR . . . B 2 6.18 -10.423 -1.261 1 54.33 ? O3D APR 186 A 1 
HETATM 35 C C3D APR . . . B 2 6.325 -9.221 -1.945 1 31.02 ? C3D APR 186 A 1 
HETATM 36 C C4D APR . . . B 2 5.551 -9.209 -3.319 1 64.13 ? C4D APR 186 A 1 
HETATM 37 H H2 APR . . . B 2 -1.232 0.68 -10.956 1 74.33 ? H2 APR 186 A 1 
HETATM 38 H H61 APR . . . B 2 4.007 0.657 -11.725 1 75.12 ? H61 APR 186 A 1 
HETATM 39 H H62 APR . . . B 2 3.059 2.089 -11.492 1 12.4 ? H62 APR 186 A 1 
HETATM 40 H H8 APR . . . B 2 3.188 -3.992 -11.924 1 61.24 ? H8 APR 186 A 1 
HETATM 41 H "H'1" APR . . . B 2 -0.781 -3.906 -11.87 1 4.03 ? "H'1" APR 186 A 1 
HETATM 42 H "H'2" APR . . . B 2 1.9 -5.573 -12.49 1 34.31 ? "H'2" APR 186 A 1 
HETATM 43 H "HO'2" APR . . . B 2 0.309 -5.249 -13.786 1 33.24 ? "HO'2" APR 186 A 1 
HETATM 44 H "H'3" APR . . . B 2 1.037 -7.38 -10.577 1 14.34 ? "H'3" APR 186 A 1 
HETATM 45 H "HO'3" APR . . . B 2 -1.319 -6.9 -10.597 1 2.12 ? "HO'3" APR 186 A 1 
HETATM 46 H "H'4" APR . . . B 2 -0.752 -5.328 -9.162 1 63.24 ? "H'4" APR 186 A 1 
HETATM 47 H "H5'1" APR . . . B 2 2.361 -5.345 -9.394 1 65.4 ? "H5'1" APR 186 A 1 
HETATM 48 H "H5'2" APR . . . B 2 1.502 -3.902 -8.819 1 14.4 ? "H5'2" APR 186 A 1 
HETATM 49 H HOA2 APR . . . B 2 0.994 -7.928 -8.586 1 71.35 ? HOA2 APR 186 A 1 
HETATM 50 H HOB2 APR . . . B 2 3.178 -5.497 -3.446 1 44.42 ? HOB2 APR 186 A 1 
HETATM 51 H H5R1 APR . . . B 2 4.219 -7.683 -2.557 1 37.23 ? H5R1 APR 186 A 1 
HETATM 52 H H5R2 APR . . . B 2 5.494 -7.043 -3.612 1 37.23 ? H5R2 APR 186 A 1 
HETATM 53 H HOR1 APR . . . B 2 8.424 -7.067 -4.824 1 61.22 ? HOR1 APR 186 A 1 
HETATM 54 H "HR'1" APR . . . B 2 8.077 -9.443 -4.62 1 72.3 ? "HR'1" APR 186 A 1 
HETATM 55 H HOR2 APR . . . B 2 8.123 -10.842 -2.151 1 53.42 ? HOR2 APR 186 A 1 
HETATM 56 H "HR'2" APR . . . B 2 8.495 -8.384 -1.718 1 64.24 ? "HR'2" APR 186 A 1 
HETATM 57 H HOR3 APR . . . B 2 6.182 -11.177 -1.919 1 73.34 ? HOR3 APR 186 A 1 
HETATM 58 H "HR'3" APR . . . B 2 5.89 -8.825 -1.036 1 22.42 ? "HR'3" APR 186 A 1 
HETATM 59 H "HR'4" APR . . . B 2 5.185 -10.108 -3.8 1 63.23 ? "HR'4" APR 186 A 1 
#
_model_server_stats.io_time_ms              114 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           8270 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           59 
#