data_2LBD # _model_server_result.job_id 05q4wzLcZ0kh1gXszvneGg _model_server_result.datetime_utc '2024-10-12 03:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2lbd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2LBD # _exptl.entry_id 2LBD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RETINOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2LBD _cell.length_a 60.6 _cell.length_b 60.6 _cell.length_c 155.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2LBD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id REA _chem_comp.mon_nstd_flag . _chem_comp.name 'RETINOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 REA sing 277 n n C1 C6 REA sing 278 n n C1 C16 REA sing 279 n n C1 C17 REA sing 280 n n C2 C3 REA sing 281 n n C2 H21 REA sing 282 n n C2 H22 REA sing 283 n n C3 C4 REA sing 284 n n C3 H31 REA sing 285 n n C3 H32 REA sing 286 n n C4 C5 REA sing 287 n n C4 H41 REA sing 288 n n C4 H42 REA sing 289 n n C5 C6 REA doub 290 n n C5 C18 REA sing 291 n n C6 C7 REA sing 292 n n C7 C8 REA doub 293 e n C7 H7 REA sing 294 n n C8 C9 REA sing 295 n n C8 H8 REA sing 296 n n C9 C10 REA doub 297 e n C9 C19 REA sing 298 n n C10 C11 REA sing 299 n n C10 H10 REA sing 300 n n C11 C12 REA doub 301 e n C11 H11 REA sing 302 n n C12 C13 REA sing 303 n n C12 H12 REA sing 304 n n C13 C14 REA doub 305 e n C13 C20 REA sing 306 n n C14 C15 REA sing 307 n n C14 H14 REA sing 308 n n C15 O1 REA doub 309 n n C15 O2 REA sing 310 n n C16 H161 REA sing 311 n n C16 H162 REA sing 312 n n C16 H163 REA sing 313 n n C17 H171 REA sing 314 n n C17 H172 REA sing 315 n n C17 H173 REA sing 316 n n C18 H181 REA sing 317 n n C18 H182 REA sing 318 n n C18 H183 REA sing 319 n n C19 H191 REA sing 320 n n C19 H192 REA sing 321 n n C19 H193 REA sing 322 n n C20 H201 REA sing 323 n n C20 H202 REA sing 324 n n C20 H203 REA sing 325 n n O2 HO2 REA sing 326 n n # _atom_sites.entry_id 2LBD _atom_sites.fract_transf_matrix[1][1] 0.016502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016502 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006439 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 REA A 1 500 500 REA REA . C 3 HOH A 1 501 501 HOH HOH . C 3 HOH A 2 502 502 HOH HOH . C 3 HOH A 3 503 503 HOH HOH . C 3 HOH A 4 504 504 HOH HOH . C 3 HOH A 5 505 505 HOH HOH . C 3 HOH A 6 506 506 HOH HOH . C 3 HOH A 7 507 507 HOH HOH . C 3 HOH A 8 508 508 HOH HOH . C 3 HOH A 9 509 509 HOH HOH . C 3 HOH A 10 510 510 HOH HOH . C 3 HOH A 11 511 511 HOH HOH . C 3 HOH A 12 512 512 HOH HOH . C 3 HOH A 13 513 513 HOH HOH . C 3 HOH A 14 514 514 HOH HOH . C 3 HOH A 15 515 515 HOH HOH . C 3 HOH A 16 516 516 HOH HOH . C 3 HOH A 17 517 517 HOH HOH . C 3 HOH A 18 518 518 HOH HOH . C 3 HOH A 19 519 519 HOH HOH . C 3 HOH A 20 520 520 HOH HOH . C 3 HOH A 21 521 521 HOH HOH . C 3 HOH A 22 522 522 HOH HOH . C 3 HOH A 23 523 523 HOH HOH . C 3 HOH A 24 524 524 HOH HOH . C 3 HOH A 25 525 525 HOH HOH . C 3 HOH A 26 526 526 HOH HOH . C 3 HOH A 27 527 527 HOH HOH . C 3 HOH A 28 528 528 HOH HOH . C 3 HOH A 29 529 529 HOH HOH . C 3 HOH A 30 530 530 HOH HOH . C 3 HOH A 31 531 531 HOH HOH . C 3 HOH A 32 532 532 HOH HOH . C 3 HOH A 33 533 533 HOH HOH . C 3 HOH A 34 534 534 HOH HOH . C 3 HOH A 35 535 535 HOH HOH . C 3 HOH A 36 536 536 HOH HOH . C 3 HOH A 37 537 537 HOH HOH . C 3 HOH A 38 538 538 HOH HOH . C 3 HOH A 39 539 539 HOH HOH . C 3 HOH A 40 540 540 HOH HOH . C 3 HOH A 41 541 541 HOH HOH . C 3 HOH A 42 542 542 HOH HOH . C 3 HOH A 43 543 543 HOH HOH . C 3 HOH A 44 544 544 HOH HOH . C 3 HOH A 45 545 545 HOH HOH . C 3 HOH A 46 546 546 HOH HOH . C 3 HOH A 47 547 547 HOH HOH . C 3 HOH A 48 548 548 HOH HOH . C 3 HOH A 49 549 549 HOH HOH . C 3 HOH A 50 550 550 HOH HOH . C 3 HOH A 51 551 551 HOH HOH . C 3 HOH A 52 552 552 HOH HOH . C 3 HOH A 53 553 553 HOH HOH . C 3 HOH A 54 554 554 HOH HOH . C 3 HOH A 55 555 555 HOH HOH . C 3 HOH A 56 556 556 HOH HOH . C 3 HOH A 57 557 557 HOH HOH . C 3 HOH A 58 558 558 HOH HOH . C 3 HOH A 59 559 559 HOH HOH . C 3 HOH A 60 560 560 HOH HOH . C 3 HOH A 61 561 561 HOH HOH . C 3 HOH A 62 562 562 HOH HOH . C 3 HOH A 63 563 563 HOH HOH . C 3 HOH A 64 564 564 HOH HOH . C 3 HOH A 65 565 565 HOH HOH . C 3 HOH A 66 566 566 HOH HOH . C 3 HOH A 67 567 567 HOH HOH . C 3 HOH A 68 568 568 HOH HOH . C 3 HOH A 69 569 569 HOH HOH . C 3 HOH A 70 570 570 HOH HOH . C 3 HOH A 71 571 571 HOH HOH . C 3 HOH A 72 572 572 HOH HOH . C 3 HOH A 73 573 573 HOH HOH . C 3 HOH A 74 574 574 HOH HOH . C 3 HOH A 75 575 575 HOH HOH . C 3 HOH A 76 576 576 HOH HOH . C 3 HOH A 77 577 577 HOH HOH . C 3 HOH A 78 578 578 HOH HOH . C 3 HOH A 79 579 579 HOH HOH . C 3 HOH A 80 580 580 HOH HOH . C 3 HOH A 81 581 581 HOH HOH . C 3 HOH A 82 582 582 HOH HOH . C 3 HOH A 83 583 583 HOH HOH . C 3 HOH A 84 584 584 HOH HOH . C 3 HOH A 85 585 585 HOH HOH . C 3 HOH A 86 586 586 HOH HOH . C 3 HOH A 87 587 587 HOH HOH . C 3 HOH A 88 588 588 HOH HOH . C 3 HOH A 89 589 589 HOH HOH . C 3 HOH A 90 590 590 HOH HOH . C 3 HOH A 91 591 591 HOH HOH . C 3 HOH A 92 592 592 HOH HOH . C 3 HOH A 93 593 593 HOH HOH . C 3 HOH A 94 594 594 HOH HOH . C 3 HOH A 95 595 595 HOH HOH . C 3 HOH A 96 596 596 HOH HOH . C 3 HOH A 97 597 597 HOH HOH . C 3 HOH A 98 598 598 HOH HOH . C 3 HOH A 99 599 599 HOH HOH . C 3 HOH A 100 600 600 HOH HOH . C 3 HOH A 101 601 601 HOH HOH . C 3 HOH A 102 602 602 HOH HOH . C 3 HOH A 103 603 603 HOH HOH . C 3 HOH A 104 604 604 HOH HOH . C 3 HOH A 105 605 605 HOH HOH . C 3 HOH A 106 606 606 HOH HOH . C 3 HOH A 107 607 607 HOH HOH . C 3 HOH A 108 608 608 HOH HOH . C 3 HOH A 109 609 609 HOH HOH . C 3 HOH A 110 610 610 HOH HOH . C 3 HOH A 111 611 611 HOH HOH . C 3 HOH A 112 612 612 HOH HOH . C 3 HOH A 113 613 613 HOH HOH . C 3 HOH A 114 614 614 HOH HOH . C 3 HOH A 115 615 615 HOH HOH . C 3 HOH A 116 616 616 HOH HOH . C 3 HOH A 117 617 617 HOH HOH . C 3 HOH A 118 618 618 HOH HOH . C 3 HOH A 119 619 619 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 REA . . . B 2 43.448 13.596 80.868 1 22.98 ? C1 REA 500 A 1 HETATM 2 C C2 REA . . . B 2 44.881 13.729 80.306 1 23.95 ? C2 REA 500 A 1 HETATM 3 C C3 REA . . . B 2 45.339 15.139 80.084 1 23.03 ? C3 REA 500 A 1 HETATM 4 C C4 REA . . . B 2 45.285 16.005 81.314 1 21.73 ? C4 REA 500 A 1 HETATM 5 C C5 REA . . . B 2 44.15 15.624 82.289 1 22.75 ? C5 REA 500 A 1 HETATM 6 C C6 REA . . . B 2 43.324 14.522 82.11 1 22 ? C6 REA 500 A 1 HETATM 7 C C7 REA . . . B 2 42.269 14.1 83.049 1 21.6 ? C7 REA 500 A 1 HETATM 8 C C8 REA . . . B 2 41.363 14.889 83.647 1 20.23 ? C8 REA 500 A 1 HETATM 9 C C9 REA . . . B 2 40.352 14.542 84.612 1 17.02 ? C9 REA 500 A 1 HETATM 10 C C10 REA . . . B 2 39.583 15.558 85.031 1 17.58 ? C10 REA 500 A 1 HETATM 11 C C11 REA . . . B 2 38.531 15.476 85.998 1 18.07 ? C11 REA 500 A 1 HETATM 12 C C12 REA . . . B 2 37.83 16.588 86.185 1 19.51 ? C12 REA 500 A 1 HETATM 13 C C13 REA . . . B 2 36.751 16.722 87.117 1 21 ? C13 REA 500 A 1 HETATM 14 C C14 REA . . . B 2 36.115 17.901 87.122 1 21.05 ? C14 REA 500 A 1 HETATM 15 C C15 REA . . . B 2 34.983 18.336 87.894 1 20.02 ? C15 REA 500 A 1 HETATM 16 C C16 REA . . . B 2 43.196 12.136 81.287 1 24.14 ? C16 REA 500 A 1 HETATM 17 C C17 REA . . . B 2 42.449 14.024 79.766 1 21.99 ? C17 REA 500 A 1 HETATM 18 C C18 REA . . . B 2 44.118 16.637 83.436 1 21.6 ? C18 REA 500 A 1 HETATM 19 C C19 REA . . . B 2 40.18 13.108 85.106 1 13.38 ? C19 REA 500 A 1 HETATM 20 C C20 REA . . . B 2 36.371 15.536 88.027 1 22.04 ? C20 REA 500 A 1 HETATM 21 O O1 REA . . . B 2 34.52 19.436 87.661 1 21.58 ? O1 REA 500 A 1 HETATM 22 O O2 REA . . . B 2 34.48 17.614 88.745 1 23.03 ? O2 REA 500 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 325 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #