data_2LBI # _model_server_result.job_id HO5ShoSU5INIbsbb-kh-zg _model_server_result.datetime_utc '2024-10-19 15:30:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2lbi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":25}' # _entry.id 2LBI # _exptl.entry_id 2LBI _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 160.254 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-nonane-1,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N2 DG 7 A DG 7 1_555 C C3 HND . B HND 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale2 B N2 DG 7 B DG 19 1_555 C C1 HND . B HND 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? hydrog WATSON-CRICK hydrog1 A N1 DG 1 A DG 1 1_555 B N3 DC 12 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N2 DG 1 A DG 1 1_555 B O2 DC 12 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O6 DG 1 A DG 1 1_555 B N4 DC 12 B DC 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DC 2 A DC 2 1_555 B N1 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N4 DC 2 A DC 2 1_555 B O6 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O2 DC 2 A DC 2 1_555 B N2 DG 11 B DG 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DT 3 A DT 3 1_555 B N1 DA 10 B DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A O4 DT 3 A DT 3 1_555 B N6 DA 10 B DA 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 DA 4 A DA 4 1_555 B N3 DT 9 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N6 DA 4 A DA 4 1_555 B O4 DT 9 B DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N1 DG 5 A DG 5 1_555 B N3 DC 8 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N2 DG 5 A DG 5 1_555 B O2 DC 8 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O6 DG 5 A DG 5 1_555 B N4 DC 8 B DC 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DC 6 A DC 6 1_555 B N1 DG 7 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N4 DC 6 A DC 6 1_555 B O6 DG 7 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A O2 DC 6 A DC 6 1_555 B N2 DG 7 B DG 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N1 DG 7 A DG 7 1_555 B N3 DC 6 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N2 DG 7 A DG 7 1_555 B O2 DC 6 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A O6 DG 7 A DG 7 1_555 B N4 DC 6 B DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N1 DA 8 A DA 8 1_555 B N3 DT 5 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N6 DA 8 A DA 8 1_555 B O4 DT 5 B DT 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N1 DG 9 A DG 9 1_555 B N3 DC 4 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N2 DG 9 A DG 9 1_555 B O2 DC 4 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A O6 DG 9 A DG 9 1_555 B N4 DC 4 B DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N3 DT 10 A DT 10 1_555 B N1 DA 3 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O4 DT 10 A DT 10 1_555 B N6 DA 3 B DA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N3 DC 12 A DC 12 1_555 B N1 DG 1 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N4 DC 12 A DC 12 1_555 B O6 DG 1 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O2 DC 12 A DC 12 1_555 B N2 DG 1 B DG 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C9 H20 O2' _chem_comp.formula_weight 160.254 _chem_comp.id HND _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-nonane-1,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag H1 C1 HND sing 150 n n C2 C1 HND sing 151 n n C1 O11 HND sing 152 n n C1 H1A HND sing 153 n n H2 C2 HND sing 154 n n H2A C2 HND sing 155 n n C2 C3 HND sing 156 n n C4 C3 HND sing 157 n n C3 H3 HND sing 158 n n C3 H3A HND sing 159 n n H4 C4 HND sing 160 n n C5 C4 HND sing 161 n n C4 O10 HND sing 162 n n H5A C5 HND sing 163 n n C6 C5 HND sing 164 n n C5 H5 HND sing 165 n n C7 C6 HND sing 166 n n H6 C6 HND sing 167 n n C6 H6A HND sing 168 n n H7 C7 HND sing 169 n n H7A C7 HND sing 170 n n C7 C8 HND sing 171 n n C9 C8 HND sing 172 n n C8 H8 HND sing 173 n n C8 H8A HND sing 174 n n H9 C9 HND sing 175 n n H9A C9 HND sing 176 n n C9 H9B HND sing 177 n n HO10 O10 HND sing 178 n n HO11 O11 HND sing 179 n n # _atom_sites.entry_id 2LBI _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id C _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id HND _pdbx_nonpoly_scheme.pdb_strand_id B _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 25 _pdbx_nonpoly_scheme.auth_seq_num 25 _pdbx_nonpoly_scheme.pdb_mon_id HND _pdbx_nonpoly_scheme.auth_mon_id HND _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HND . . . C 3 -0.679 -3.3 11.394 1 0 ? C1 HND 25 B 1 HETATM 2 C C2 HND . . . C 3 -1.676 -3.472 12.515 1 0 ? C2 HND 25 B 1 HETATM 3 C C3 HND . . . C 3 -1.216 -3.147 13.946 1 0 ? C3 HND 25 B 1 HETATM 4 C C4 HND . . . C 3 0.204 -3.629 14.378 1 0 ? C4 HND 25 B 1 HETATM 5 C C5 HND . . . C 3 0.555 -5.121 14.186 1 0 ? C5 HND 25 B 1 HETATM 6 C C6 HND . . . C 3 -0.505 -6.16 14.615 1 0 ? C6 HND 25 B 1 HETATM 7 C C7 HND . . . C 3 -0.86 -7.088 13.441 1 0 ? C7 HND 25 B 1 HETATM 8 C C8 HND . . . C 3 -2.089 -7.948 13.755 1 0 ? C8 HND 25 B 1 HETATM 9 C C9 HND . . . C 3 -2.487 -8.8 12.548 1 0 ? C9 HND 25 B 1 HETATM 10 O O10 HND . . . C 3 0.405 -3.286 15.737 1 0 ? O10 HND 25 B 1 HETATM 11 O O11 HND . . . C 3 -1.364 -3.586 10.23 1 0 ? O11 HND 25 B 1 HETATM 12 H H2 HND . . . C 3 -2.017 -4.501 12.493 1 0 ? H2 HND 25 B 1 HETATM 13 H H3 HND . . . C 3 -1.92 -3.653 14.606 1 0 ? H3 HND 25 B 1 HETATM 14 H H4 HND . . . C 3 0.937 -3.063 13.806 1 0 ? H4 HND 25 B 1 HETATM 15 H H5 HND . . . C 3 1.473 -5.33 14.739 1 0 ? H5 HND 25 B 1 HETATM 16 H H5A HND . . . C 3 0.813 -5.275 13.14 1 0 ? H5A HND 25 B 1 HETATM 17 H HO10 HND . . . C 3 0.259 -2.338 15.797 1 0 ? HO10 HND 25 B 1 HETATM 18 H H6 HND . . . C 3 -1.404 -5.673 14.985 1 0 ? H6 HND 25 B 1 HETATM 19 H H6A HND . . . C 3 -0.105 -6.76 15.432 1 0 ? H6A HND 25 B 1 HETATM 20 H H7 HND . . . C 3 -1.072 -6.493 12.554 1 0 ? H7 HND 25 B 1 HETATM 21 H H7A HND . . . C 3 -0.007 -7.732 13.225 1 0 ? H7A HND 25 B 1 HETATM 22 H H8 HND . . . C 3 -2.926 -7.299 14.013 1 0 ? H8 HND 25 B 1 HETATM 23 H H8A HND . . . C 3 -1.865 -8.602 14.597 1 0 ? H8A HND 25 B 1 HETATM 24 H H9 HND . . . C 3 -2.73 -8.152 11.705 1 0 ? H9 HND 25 B 1 HETATM 25 H H9A HND . . . C 3 -1.665 -9.458 12.273 1 0 ? H9A HND 25 B 1 HETATM 26 H H9B HND . . . C 3 -3.363 -9.395 12.804 1 0 ? H9B HND 25 B 1 HETATM 27 H H1 HND . . . C 3 0.177 -3.963 11.501 1 0 ? H1 HND 25 B 1 HETATM 28 H HO11 HND . . . C 3 -0.9 -3.096 9.537 1 0 ? HO11 HND 25 B 1 HETATM 29 H H2A HND . . . C 3 -2.551 -2.865 12.291 1 0 ? H2A HND 25 B 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 29 #