data_2LCF
#
_model_server_result.job_id            b8lidnzCX7XFaFwFJvGkJA 
_model_server_result.datetime_utc      '2024-11-04 20:08:54' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2lcf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":219}' 
#
_entry.id    2LCF 
#
_exptl.entry_id    2LCF 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              522.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 23 A SER 17 1_555 C MG MG . A MG 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc2 B O2G GNP . A GNP 219 1_555 C MG MG . A MG 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc3 B O2B GNP . A GNP 219 1_555 C MG MG . A MG 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc4 C MG MG . A MG 246 1_555 D O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? 
metalc ? metalc5 C MG MG . A MG 246 1_555 D O HOH . A HOH 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc6 C MG MG . A MG 246 1_555 D O HOH . A HOH 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
#
_chem_comp.formula           'C10 H17 N6 O13 P3' 
_chem_comp.formula_weight    522.196 
_chem_comp.id                GNP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G GNP doub 129 n n 
PG O2G GNP sing 130 n n 
PG O3G GNP sing 131 n n 
PG N3B GNP sing 132 n n 
O2G HOG2 GNP sing 133 n n 
O3G HOG3 GNP sing 134 n n 
N3B PB GNP sing 135 n n 
N3B HNB3 GNP sing 136 n n 
PB O1B GNP doub 137 n n 
PB O2B GNP sing 138 n n 
PB O3A GNP sing 139 n n 
O2B HOB2 GNP sing 140 n n 
O3A PA GNP sing 141 n n 
PA O1A GNP doub 142 n n 
PA O2A GNP sing 143 n n 
PA O5' GNP sing 144 n n 
O2A HOA2 GNP sing 145 n n 
O5' C5' GNP sing 146 n n 
C5' C4' GNP sing 147 n n 
C5' "H5'2" GNP sing 148 n n 
C5' "H5'1" GNP sing 149 n n 
C4' O4' GNP sing 150 n n 
C4' C3' GNP sing 151 n n 
C4' H4' GNP sing 152 n n 
O4' C1' GNP sing 153 n n 
C3' O3' GNP sing 154 n n 
C3' C2' GNP sing 155 n n 
C3' H3' GNP sing 156 n n 
O3' HO3' GNP sing 157 n n 
C2' O2' GNP sing 158 n n 
C2' C1' GNP sing 159 n n 
C2' H2' GNP sing 160 n n 
O2' HO2' GNP sing 161 n n 
C1' N9 GNP sing 162 n n 
C1' H1' GNP sing 163 n n 
N9 C8 GNP sing 164 n y 
N9 C4 GNP sing 165 n y 
C8 N7 GNP doub 166 n y 
C8 H8 GNP sing 167 n n 
N7 C5 GNP sing 168 n y 
C5 C6 GNP sing 169 n y 
C5 C4 GNP doub 170 n y 
C6 O6 GNP doub 171 n n 
C6 N1 GNP sing 172 n y 
N1 C2 GNP sing 173 n y 
N1 HN1 GNP sing 174 n n 
C2 N2 GNP sing 175 n n 
C2 N3 GNP doub 176 n y 
N2 HN21 GNP sing 177 n n 
N2 HN22 GNP sing 178 n n 
N3 C4 GNP sing 179 n y 
#
_atom_sites.entry_id                     2LCF 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GNP A 1 219 219 GNP GNP . 
C 3 MG A 1 246 246 MG MG . 
D 4 HOH A 1 252 252 HOH HOH . 
D 4 HOH A 2 258 258 HOH HOH . 
D 4 HOH A 3 264 264 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG GNP . . . B 2 -2.867 4.329 2.024 1 60.01 ? PG GNP 219 A 1 
HETATM 2 O O1G GNP . . . B 2 -4.324 4.92 2.368 1 23.33 ? O1G GNP 219 A 1 
HETATM 3 O O2G GNP . . . B 2 -3.024 2.727 2.051 1 73.32 ? O2G GNP 219 A 1 
HETATM 4 O O3G GNP . . . B 2 -1.817 4.819 2.946 1 35.21 ? O3G GNP 219 A 1 
HETATM 5 N N3B GNP . . . B 2 -2.579 4.723 0.478 1 64.1 ? N3B GNP 219 A 1 
HETATM 6 P PB GNP . . . B 2 -1.007 4.501 0.153 1 2.42 ? PB GNP 219 A 1 
HETATM 7 O O1B GNP . . . B 2 -0.235 5.28 1.147 1 43.03 ? O1B GNP 219 A 1 
HETATM 8 O O2B GNP . . . B 2 -0.75 3.047 0.044 1 41.51 ? O2B GNP 219 A 1 
HETATM 9 O O3A GNP . . . B 2 -0.838 5.178 -1.298 1 15.13 ? O3A GNP 219 A 1 
HETATM 10 P PA GNP . . . B 2 -0.527 6.752 -1.425 1 45.13 ? PA GNP 219 A 1 
HETATM 11 O O1A GNP . . . B 2 -1.414 7.485 -0.496 1 71.23 ? O1A GNP 219 A 1 
HETATM 12 O O2A GNP . . . B 2 -0.578 7.09 -2.866 1 43.33 ? O2A GNP 219 A 1 
HETATM 13 O O5' GNP . . . B 2 0.991 6.849 -0.9 1 35.11 ? O5' GNP 219 A 1 
HETATM 14 C C5' GNP . . . B 2 2.08 7.013 -1.814 1 62.53 ? C5' GNP 219 A 1 
HETATM 15 C C4' GNP . . . B 2 2.237 8.476 -2.239 1 73.51 ? C4' GNP 219 A 1 
HETATM 16 O O4' GNP . . . B 2 3.299 8.565 -3.206 1 13.21 ? O4' GNP 219 A 1 
HETATM 17 C C3' GNP . . . B 2 0.983 8.931 -2.988 1 72.32 ? C3' GNP 219 A 1 
HETATM 18 O O3' GNP . . . B 2 0.976 10.354 -3.136 1 23.33 ? O3' GNP 219 A 1 
HETATM 19 C C2' GNP . . . B 2 1.25 8.252 -4.328 1 63.13 ? C2' GNP 219 A 1 
HETATM 20 O O2' GNP . . . B 2 0.426 8.834 -5.341 1 34.34 ? O2' GNP 219 A 1 
HETATM 21 C C1' GNP . . . B 2 2.696 8.711 -4.505 1 14.23 ? C1' GNP 219 A 1 
HETATM 22 N N9 GNP . . . B 2 3.398 7.9 -5.526 1 0.04 ? N9 GNP 219 A 1 
HETATM 23 C C8 GNP . . . B 2 3.082 6.662 -5.896 1 15.43 ? C8 GNP 219 A 1 
HETATM 24 N N7 GNP . . . B 2 3.933 6.248 -6.831 1 62.42 ? N7 GNP 219 A 1 
HETATM 25 C C5 GNP . . . B 2 4.801 7.229 -7.062 1 75.42 ? C5 GNP 219 A 1 
HETATM 26 C C6 GNP . . . B 2 5.886 7.352 -7.919 1 33.12 ? C6 GNP 219 A 1 
HETATM 27 O O6 GNP . . . B 2 6.207 6.428 -8.665 1 42.42 ? O6 GNP 219 A 1 
HETATM 28 N N1 GNP . . . B 2 6.61 8.551 -7.916 1 43.15 ? N1 GNP 219 A 1 
HETATM 29 C C2 GNP . . . B 2 6.221 9.584 -7.054 1 63.51 ? C2 GNP 219 A 1 
HETATM 30 N N2 GNP . . . B 2 6.901 10.727 -7.043 1 52.51 ? N2 GNP 219 A 1 
HETATM 31 N N3 GNP . . . B 2 5.167 9.427 -6.241 1 71.24 ? N3 GNP 219 A 1 
HETATM 32 C C4 GNP . . . B 2 4.459 8.287 -6.229 1 72.05 ? C4 GNP 219 A 1 
HETATM 33 H HNB3 GNP . . . B 2 -2.785 5.695 0.363 1 15.2 ? HNB3 GNP 219 A 1 
HETATM 34 H "H5'2" GNP . . . B 2 1.938 6.464 -2.637 1 43.32 ? "H5'2" GNP 219 A 1 
HETATM 35 H "H5'1" GNP . . . B 2 2.94 6.719 -1.397 1 31.42 ? "H5'1" GNP 219 A 1 
HETATM 36 H H4' GNP . . . B 2 2.341 9.055 -1.43 1 11.33 ? H4' GNP 219 A 1 
HETATM 37 H H3' GNP . . . B 2 0.138 8.644 -2.539 1 53.41 ? H3' GNP 219 A 1 
HETATM 38 H HO3' GNP . . . B 2 1.778 10.639 -3.663 1 55.05 ? HO3' GNP 219 A 1 
HETATM 39 H H2' GNP . . . B 2 1.157 7.261 -4.223 1 70.33 ? H2' GNP 219 A 1 
HETATM 40 H HO2' GNP . . . B 2 0.641 9.807 -5.428 1 60.01 ? HO2' GNP 219 A 1 
HETATM 41 H H1' GNP . . . B 2 2.704 9.671 -4.785 1 4.4 ? H1' GNP 219 A 1 
HETATM 42 H H8 GNP . . . B 2 2.514 6.076 -5.317 1 53.11 ? H8 GNP 219 A 1 
HETATM 43 H HN1 GNP . . . B 2 7.397 8.668 -8.522 1 62.43 ? HN1 GNP 219 A 1 
HETATM 44 H HN21 GNP . . . B 2 7.687 10.847 -7.649 1 31.4 ? HN21 GNP 219 A 1 
HETATM 45 H HN22 GNP . . . B 2 6.625 11.467 -6.429 1 71.33 ? HN22 GNP 219 A 1 
#
_model_server_stats.io_time_ms              0 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    65 
_model_server_stats.query_time_ms           5323 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           45 
#