data_2LDB # _model_server_result.job_id UwJ1Hk_h8Uc2LXsaq3g0oQ _model_server_result.datetime_utc '2024-11-29 03:07:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ldb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 2LDB # _exptl.entry_id 2LDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2LDB _cell.length_a 86.8 _cell.length_b 86.8 _cell.length_c 356.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2LDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 G N N ? 3 J N N ? 3 N N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K O3 FBP . C FBP 6 1_555 C NE2 GLN 169 C GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? covale ? covale2 O O3 FBP . D FBP 2 1_555 D NE2 GLN 169 D GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 271 n n PA O2A NAD sing 272 n n PA O5B NAD sing 273 n n PA O3 NAD sing 274 n n O2A HOA2 NAD sing 275 n n O5B C5B NAD sing 276 n n C5B C4B NAD sing 277 n n C5B H51A NAD sing 278 n n C5B H52A NAD sing 279 n n C4B O4B NAD sing 280 n n C4B C3B NAD sing 281 n n C4B H4B NAD sing 282 n n O4B C1B NAD sing 283 n n C3B O3B NAD sing 284 n n C3B C2B NAD sing 285 n n C3B H3B NAD sing 286 n n O3B HO3A NAD sing 287 n n C2B O2B NAD sing 288 n n C2B C1B NAD sing 289 n n C2B H2B NAD sing 290 n n O2B HO2A NAD sing 291 n n C1B N9A NAD sing 292 n n C1B H1B NAD sing 293 n n N9A C8A NAD sing 294 n y N9A C4A NAD sing 295 n y C8A N7A NAD doub 296 n y C8A H8A NAD sing 297 n n N7A C5A NAD sing 298 n y C5A C6A NAD sing 299 n y C5A C4A NAD doub 300 n y C6A N6A NAD sing 301 n n C6A N1A NAD doub 302 n y N6A H61A NAD sing 303 n n N6A H62A NAD sing 304 n n N1A C2A NAD sing 305 n y C2A N3A NAD doub 306 n y C2A H2A NAD sing 307 n n N3A C4A NAD sing 308 n y O3 PN NAD sing 309 n n PN O1N NAD doub 310 n n PN O2N NAD sing 311 n n PN O5D NAD sing 312 n n O5D C5D NAD sing 313 n n C5D C4D NAD sing 314 n n C5D H51N NAD sing 315 n n C5D H52N NAD sing 316 n n C4D O4D NAD sing 317 n n C4D C3D NAD sing 318 n n C4D H4D NAD sing 319 n n O4D C1D NAD sing 320 n n C3D O3D NAD sing 321 n n C3D C2D NAD sing 322 n n C3D H3D NAD sing 323 n n O3D HO3N NAD sing 324 n n C2D O2D NAD sing 325 n n C2D C1D NAD sing 326 n n C2D H2D NAD sing 327 n n O2D HO2N NAD sing 328 n n C1D N1N NAD sing 329 n n C1D H1D NAD sing 330 n n N1N C2N NAD sing 331 n y N1N C6N NAD doub 332 n y C2N C3N NAD doub 333 n y C2N H2N NAD sing 334 n n C3N C7N NAD sing 335 n n C3N C4N NAD sing 336 n y C7N O7N NAD doub 337 n n C7N N7N NAD sing 338 n n N7N H71N NAD sing 339 n n N7N H72N NAD sing 340 n n C4N C5N NAD doub 341 n y C4N H4N NAD sing 342 n n C5N C6N NAD sing 343 n y C5N H5N NAD sing 344 n n C6N H6N NAD sing 345 n n # _atom_sites.entry_id 2LDB _atom_sites.fract_transf_matrix[1][1] 0.011521 _atom_sites.fract_transf_matrix[1][2] 0.006652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 3 3 SO4 SO4 . F 2 SO4 A 1 4 4 SO4 SO4 . G 3 NAD A 1 1 1 NAD NAD . H 2 SO4 B 1 7 3 SO4 SO4 . I 2 SO4 B 1 8 4 SO4 SO4 . J 3 NAD B 1 5 1 NAD NAD . K 4 FBP C 1 6 2 FBP FBP . L 2 SO4 C 1 11 3 SO4 SO4 . M 2 SO4 C 1 12 4 SO4 SO4 . N 3 NAD C 1 9 1 NAD NAD . O 4 FBP D 1 2 2 FBP FBP . P 2 SO4 D 1 332 3 SO4 SO4 . Q 2 SO4 D 1 333 4 SO4 SO4 . R 3 NAD D 1 13 1 NAD NAD . S 5 HOH A 1 336 336 HOH HOH . S 5 HOH A 2 337 337 HOH HOH . S 5 HOH A 3 338 338 HOH HOH . S 5 HOH A 4 339 339 HOH HOH . S 5 HOH A 5 340 340 HOH HOH . S 5 HOH A 6 341 341 HOH HOH . S 5 HOH A 7 342 342 HOH HOH . S 5 HOH A 8 343 343 HOH HOH . S 5 HOH A 9 344 344 HOH HOH . S 5 HOH A 10 345 345 HOH HOH . S 5 HOH A 11 346 346 HOH HOH . S 5 HOH A 12 347 347 HOH HOH . S 5 HOH A 13 348 348 HOH HOH . S 5 HOH A 14 349 349 HOH HOH . S 5 HOH A 15 350 350 HOH HOH . S 5 HOH A 16 351 351 HOH HOH . S 5 HOH A 17 352 352 HOH HOH . S 5 HOH A 18 353 353 HOH HOH . S 5 HOH A 19 354 354 HOH HOH . S 5 HOH A 20 355 355 HOH HOH . S 5 HOH A 21 356 356 HOH HOH . S 5 HOH A 22 357 357 HOH HOH . S 5 HOH A 23 358 358 HOH HOH . S 5 HOH A 24 359 359 HOH HOH . S 5 HOH A 25 360 360 HOH HOH . S 5 HOH A 26 361 361 HOH HOH . S 5 HOH A 27 362 362 HOH HOH . S 5 HOH A 28 363 363 HOH HOH . S 5 HOH A 29 364 364 HOH HOH . S 5 HOH A 30 365 365 HOH HOH . S 5 HOH A 31 366 366 HOH HOH . S 5 HOH A 32 367 367 HOH HOH . S 5 HOH A 33 368 368 HOH HOH . S 5 HOH A 34 369 369 HOH HOH . S 5 HOH A 35 370 370 HOH HOH . S 5 HOH A 36 371 371 HOH HOH . S 5 HOH A 37 372 372 HOH HOH . S 5 HOH A 38 375 375 HOH HOH . S 5 HOH A 39 376 376 HOH HOH . S 5 HOH A 40 377 377 HOH HOH . S 5 HOH A 41 378 378 HOH HOH . S 5 HOH A 42 379 379 HOH HOH . S 5 HOH A 43 380 380 HOH HOH . S 5 HOH A 44 381 381 HOH HOH . S 5 HOH A 45 382 382 HOH HOH . S 5 HOH A 46 383 383 HOH HOH . S 5 HOH A 47 384 384 HOH HOH . T 5 HOH C 1 373 373 HOH HOH . T 5 HOH C 2 374 374 HOH HOH . T 5 HOH C 3 385 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . G 3 16.485 54.829 205.312 1 22.08 ? PA NAD 1 A 1 HETATM 2 O O1A NAD . . . G 3 15.941 54.963 206.728 1 22.33 ? O1A NAD 1 A 1 HETATM 3 O O2A NAD . . . G 3 16.637 53.39 204.994 1 21.88 ? O2A NAD 1 A 1 HETATM 4 O O5B NAD . . . G 3 17.899 55.625 205.328 1 20.61 ? O5B NAD 1 A 1 HETATM 5 C C5B NAD . . . G 3 18.669 55.638 204.092 1 19.1 ? C5B NAD 1 A 1 HETATM 6 C C4B NAD . . . G 3 20.108 55.686 204.356 1 18.27 ? C4B NAD 1 A 1 HETATM 7 O O4B NAD . . . G 3 20.616 57.062 204.357 1 17.65 ? O4B NAD 1 A 1 HETATM 8 C C3B NAD . . . G 3 20.752 54.99 205.555 1 18.16 ? C3B NAD 1 A 1 HETATM 9 O O3B NAD . . . G 3 21.424 53.778 205.121 1 18.08 ? O3B NAD 1 A 1 HETATM 10 C C2B NAD . . . G 3 21.75 56.024 206.065 1 17.99 ? C2B NAD 1 A 1 HETATM 11 O O2B NAD . . . G 3 22.963 55.558 206.642 1 18 ? O2B NAD 1 A 1 HETATM 12 C C1B NAD . . . G 3 22 56.875 204.762 1 17.44 ? C1B NAD 1 A 1 HETATM 13 N N9A NAD . . . G 3 22.421 58.232 205.115 1 17.01 ? N9A NAD 1 A 1 HETATM 14 C C8A NAD . . . G 3 21.771 59.071 205.968 1 16.77 ? C8A NAD 1 A 1 HETATM 15 N N7A NAD . . . G 3 22.459 60.204 206.169 1 16.94 ? N7A NAD 1 A 1 HETATM 16 C C5A NAD . . . G 3 23.584 60.084 205.389 1 16.39 ? C5A NAD 1 A 1 HETATM 17 C C6A NAD . . . G 3 24.615 60.994 205.092 1 16.09 ? C6A NAD 1 A 1 HETATM 18 N N6A NAD . . . G 3 24.699 62.188 205.677 1 15.87 ? N6A NAD 1 A 1 HETATM 19 N N1A NAD . . . G 3 25.55 60.598 204.187 1 16.14 ? N1A NAD 1 A 1 HETATM 20 C C2A NAD . . . G 3 25.461 59.313 203.649 1 16.02 ? C2A NAD 1 A 1 HETATM 21 N N3A NAD . . . G 3 24.541 58.415 203.863 1 16.41 ? N3A NAD 1 A 1 HETATM 22 C C4A NAD . . . G 3 23.587 58.869 204.722 1 16.77 ? C4A NAD 1 A 1 HETATM 23 O O3 NAD . . . G 3 15.649 55.669 204.274 1 21.76 ? O3 NAD 1 A 1 HETATM 24 P PN NAD . . . G 3 14.742 55.305 203.053 1 22.78 ? PN NAD 1 A 1 HETATM 25 O O1N NAD . . . G 3 13.377 54.802 203.474 1 22.37 ? O1N NAD 1 A 1 HETATM 26 O O2N NAD . . . G 3 15.417 54.241 202.257 1 22.32 ? O2N NAD 1 A 1 HETATM 27 O O5D NAD . . . G 3 14.597 56.714 202.27 1 22.9 ? O5D NAD 1 A 1 HETATM 28 C C5D NAD . . . G 3 15.356 57.917 202.599 1 22.43 ? C5D NAD 1 A 1 HETATM 29 C C4D NAD . . . G 3 14.573 59.046 201.935 1 22.49 ? C4D NAD 1 A 1 HETATM 30 O O4D NAD . . . G 3 13.864 58.3 200.815 1 22.5 ? O4D NAD 1 A 1 HETATM 31 C C3D NAD . . . G 3 13.441 59.613 202.825 1 22.73 ? C3D NAD 1 A 1 HETATM 32 O O3D NAD . . . G 3 13.399 61.044 202.783 1 22.6 ? O3D NAD 1 A 1 HETATM 33 C C2D NAD . . . G 3 12.171 59.044 202.202 1 23.01 ? C2D NAD 1 A 1 HETATM 34 O O2D NAD . . . G 3 10.959 59.76 202.313 1 22.47 ? O2D NAD 1 A 1 HETATM 35 C C1D NAD . . . G 3 12.626 59 200.731 1 23.19 ? C1D NAD 1 A 1 HETATM 36 N N1N NAD . . . G 3 11.595 58.442 199.88 1 23.53 ? N1N NAD 1 A 1 HETATM 37 C C2N NAD . . . G 3 11.107 59.25 198.897 1 23.82 ? C2N NAD 1 A 1 HETATM 38 C C3N NAD . . . G 3 10.115 58.813 198.086 1 24.14 ? C3N NAD 1 A 1 HETATM 39 C C7N NAD . . . G 3 9.515 59.579 196.875 1 24.86 ? C7N NAD 1 A 1 HETATM 40 O O7N NAD . . . G 3 8.542 59.063 196.29 1 25.92 ? O7N NAD 1 A 1 HETATM 41 N N7N NAD . . . G 3 10.128 60.679 196.445 1 25.02 ? N7N NAD 1 A 1 HETATM 42 C C4N NAD . . . G 3 9.594 57.505 198.178 1 23.81 ? C4N NAD 1 A 1 HETATM 43 C C5N NAD . . . G 3 10.087 56.797 199.257 1 23.55 ? C5N NAD 1 A 1 HETATM 44 C C6N NAD . . . G 3 10.999 57.196 200.187 1 23.55 ? C6N NAD 1 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 38 _model_server_stats.query_time_ms 1222 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #