data_2LDB
#
_model_server_result.job_id            Nh_8GrfiVXP4bnFpENbf7w 
_model_server_result.datetime_utc      '2024-10-16 10:30:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ldb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":2}' 
#
_entry.id    2LDB 
#
_exptl.entry_id    2LDB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              340.116 
_entity.id                          4 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            1,6-di-O-phosphono-beta-D-fructofuranose 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            2LDB 
_cell.length_a            86.8 
_cell.length_b            86.8 
_cell.length_c            356.6 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2LDB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 K O3 FBP . C FBP 6 1_555 C NE2 GLN 169 C GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
covale ? covale2 O O3 FBP . D FBP 2 1_555 D NE2 GLN 169 D GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? 
#
_chem_comp.formula           'C6 H14 O12 P2' 
_chem_comp.formula_weight    340.116 
_chem_comp.id                FBP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              1,6-di-O-phosphono-beta-D-fructofuranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P FBP doub 83 n n 
P1 O2P FBP sing 84 n n 
P1 O3P FBP sing 85 n n 
P1 O1 FBP sing 86 n n 
O2P HOP2 FBP sing 87 n n 
O3P HOP3 FBP sing 88 n n 
O1 C1 FBP sing 89 n n 
C1 C2 FBP sing 90 n n 
C1 H11 FBP sing 91 n n 
C1 H12 FBP sing 92 n n 
C2 O2 FBP sing 93 n n 
C2 C3 FBP sing 94 n n 
C2 O5 FBP sing 95 n n 
O2 HO2 FBP sing 96 n n 
C3 O3 FBP sing 97 n n 
C3 C4 FBP sing 98 n n 
C3 H3 FBP sing 99 n n 
O3 HO3 FBP sing 100 n n 
C4 O4 FBP sing 101 n n 
C4 C5 FBP sing 102 n n 
C4 H4 FBP sing 103 n n 
O4 HO4 FBP sing 104 n n 
C5 O5 FBP sing 105 n n 
C5 C6 FBP sing 106 n n 
C5 H5 FBP sing 107 n n 
C6 O6 FBP sing 108 n n 
C6 H61 FBP sing 109 n n 
C6 H62 FBP sing 110 n n 
O6 P2 FBP sing 111 n n 
P2 O4P FBP doub 112 n n 
P2 O5P FBP sing 113 n n 
P2 O6P FBP sing 114 n n 
O5P HOP5 FBP sing 115 n n 
O6P HOP6 FBP sing 116 n n 
#
_pdbx_chem_comp_identifier.comp_id            FBP 
_pdbx_chem_comp_identifier.identifier         b-D-Fruf1PO36PO3 
_pdbx_chem_comp_identifier.type               'IUPAC CARBOHYDRATE SYMBOL' 
_pdbx_chem_comp_identifier.program            PDB-CARE 
_pdbx_chem_comp_identifier.program_version    1 
#
_atom_sites.entry_id                     2LDB 
_atom_sites.fract_transf_matrix[1][1]    0.011521 
_atom_sites.fract_transf_matrix[1][2]    0.006652 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013303 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002804 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SO4 A 1 3 3 SO4 SO4 . 
F 2 SO4 A 1 4 4 SO4 SO4 . 
G 3 NAD A 1 1 1 NAD NAD . 
H 2 SO4 B 1 7 3 SO4 SO4 . 
I 2 SO4 B 1 8 4 SO4 SO4 . 
J 3 NAD B 1 5 1 NAD NAD . 
K 4 FBP C 1 6 2 FBP FBP . 
L 2 SO4 C 1 11 3 SO4 SO4 . 
M 2 SO4 C 1 12 4 SO4 SO4 . 
N 3 NAD C 1 9 1 NAD NAD . 
O 4 FBP D 1 2 2 FBP FBP . 
P 2 SO4 D 1 332 3 SO4 SO4 . 
Q 2 SO4 D 1 333 4 SO4 SO4 . 
R 3 NAD D 1 13 1 NAD NAD . 
S 5 HOH A 1 336 336 HOH HOH . 
S 5 HOH A 2 337 337 HOH HOH . 
S 5 HOH A 3 338 338 HOH HOH . 
S 5 HOH A 4 339 339 HOH HOH . 
S 5 HOH A 5 340 340 HOH HOH . 
S 5 HOH A 6 341 341 HOH HOH . 
S 5 HOH A 7 342 342 HOH HOH . 
S 5 HOH A 8 343 343 HOH HOH . 
S 5 HOH A 9 344 344 HOH HOH . 
S 5 HOH A 10 345 345 HOH HOH . 
S 5 HOH A 11 346 346 HOH HOH . 
S 5 HOH A 12 347 347 HOH HOH . 
S 5 HOH A 13 348 348 HOH HOH . 
S 5 HOH A 14 349 349 HOH HOH . 
S 5 HOH A 15 350 350 HOH HOH . 
S 5 HOH A 16 351 351 HOH HOH . 
S 5 HOH A 17 352 352 HOH HOH . 
S 5 HOH A 18 353 353 HOH HOH . 
S 5 HOH A 19 354 354 HOH HOH . 
S 5 HOH A 20 355 355 HOH HOH . 
S 5 HOH A 21 356 356 HOH HOH . 
S 5 HOH A 22 357 357 HOH HOH . 
S 5 HOH A 23 358 358 HOH HOH . 
S 5 HOH A 24 359 359 HOH HOH . 
S 5 HOH A 25 360 360 HOH HOH . 
S 5 HOH A 26 361 361 HOH HOH . 
S 5 HOH A 27 362 362 HOH HOH . 
S 5 HOH A 28 363 363 HOH HOH . 
S 5 HOH A 29 364 364 HOH HOH . 
S 5 HOH A 30 365 365 HOH HOH . 
S 5 HOH A 31 366 366 HOH HOH . 
S 5 HOH A 32 367 367 HOH HOH . 
S 5 HOH A 33 368 368 HOH HOH . 
S 5 HOH A 34 369 369 HOH HOH . 
S 5 HOH A 35 370 370 HOH HOH . 
S 5 HOH A 36 371 371 HOH HOH . 
S 5 HOH A 37 372 372 HOH HOH . 
S 5 HOH A 38 375 375 HOH HOH . 
S 5 HOH A 39 376 376 HOH HOH . 
S 5 HOH A 40 377 377 HOH HOH . 
S 5 HOH A 41 378 378 HOH HOH . 
S 5 HOH A 42 379 379 HOH HOH . 
S 5 HOH A 43 380 380 HOH HOH . 
S 5 HOH A 44 381 381 HOH HOH . 
S 5 HOH A 45 382 382 HOH HOH . 
S 5 HOH A 46 383 383 HOH HOH . 
S 5 HOH A 47 384 384 HOH HOH . 
T 5 HOH C 1 373 373 HOH HOH . 
T 5 HOH C 2 374 374 HOH HOH . 
T 5 HOH C 3 385 385 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 FBP . . . O 4 -0.746 54.431 173.024 0.5 19.86 ? P1 FBP 2 D 1 
HETATM 2 O O1P FBP . . . O 4 -1.646 54.97 174.073 0.5 19.57 ? O1P FBP 2 D 1 
HETATM 3 O O2P FBP . . . O 4 -0.813 55.004 171.667 0.5 19.54 ? O2P FBP 2 D 1 
HETATM 4 O O3P FBP . . . O 4 -0.983 52.885 172.88 0.5 20.06 ? O3P FBP 2 D 1 
HETATM 5 O O1 FBP . . . O 4 0.721 54.562 173.627 0.5 19.87 ? O1 FBP 2 D 1 
HETATM 6 C C1 FBP . . . O 4 1.364 53.492 174.396 0.5 21.58 ? C1 FBP 2 D 1 
HETATM 7 C C2 FBP . . . O 4 2.65 54.113 174.936 0.5 22.36 ? C2 FBP 2 D 1 
HETATM 8 O O2 FBP . . . O 4 3.204 54.959 173.973 0.5 23.27 ? O2 FBP 2 D 1 
HETATM 9 C C3 FBP . . . O 4 3.716 53.095 175.381 0.5 22.42 ? C3 FBP 2 D 1 
HETATM 10 O O3 FBP . . . O 4 4.459 52.657 174.26 0.5 20.6 ? O3 FBP 2 D 1 
HETATM 11 C C4 FBP . . . O 4 4.513 53.894 176.427 0.5 22.45 ? C4 FBP 2 D 1 
HETATM 12 O O4 FBP . . . O 4 5.219 53.121 177.399 0.5 20.31 ? O4 FBP 2 D 1 
HETATM 13 C C5 FBP . . . O 4 3.415 54.742 177.095 0.5 22.33 ? C5 FBP 2 D 1 
HETATM 14 O O5 FBP . . . O 4 2.337 54.833 176.136 0.5 22.84 ? O5 FBP 2 D 1 
HETATM 15 C C6 FBP . . . O 4 3.89 56.124 177.44 0.5 21.24 ? C6 FBP 2 D 1 
HETATM 16 O O6 FBP . . . O 4 2.906 56.881 178.279 0.5 19.4 ? O6 FBP 2 D 1 
HETATM 17 P P2 FBP . . . O 4 2.763 58.47 178.572 0.5 19.65 ? P2 FBP 2 D 1 
HETATM 18 O O4P FBP . . . O 4 2.752 59.185 177.229 0.5 19.2 ? O4P FBP 2 D 1 
HETATM 19 O O5P FBP . . . O 4 3.914 58.893 179.45 0.5 19.72 ? O5P FBP 2 D 1 
HETATM 20 O O6P FBP . . . O 4 1.439 58.526 179.32 0.5 19.4 ? O6P FBP 2 D 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           20 
#