data_2LDB # _model_server_result.job_id KW4lUzn8OmbReqAq5LZxAw _model_server_result.datetime_utc '2024-11-05 22:12:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2ldb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":8}' # _entry.id 2LDB # _exptl.entry_id 2LDB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2LDB _cell.length_a 86.8 _cell.length_b 86.8 _cell.length_c 356.6 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2LDB _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 L N N ? 2 M N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 K O3 FBP . C FBP 6 1_555 C NE2 GLN 169 C GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? covale ? covale2 O O3 FBP . D FBP 2 1_555 D NE2 GLN 169 D GLN 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 399 n n S O2 SO4 doub 400 n n S O3 SO4 sing 401 n n S O4 SO4 sing 402 n n # _atom_sites.entry_id 2LDB _atom_sites.fract_transf_matrix[1][1] 0.011521 _atom_sites.fract_transf_matrix[1][2] 0.006652 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013303 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 SO4 A 1 3 3 SO4 SO4 . F 2 SO4 A 1 4 4 SO4 SO4 . G 3 NAD A 1 1 1 NAD NAD . H 2 SO4 B 1 7 3 SO4 SO4 . I 2 SO4 B 1 8 4 SO4 SO4 . J 3 NAD B 1 5 1 NAD NAD . K 4 FBP C 1 6 2 FBP FBP . L 2 SO4 C 1 11 3 SO4 SO4 . M 2 SO4 C 1 12 4 SO4 SO4 . N 3 NAD C 1 9 1 NAD NAD . O 4 FBP D 1 2 2 FBP FBP . P 2 SO4 D 1 332 3 SO4 SO4 . Q 2 SO4 D 1 333 4 SO4 SO4 . R 3 NAD D 1 13 1 NAD NAD . S 5 HOH A 1 336 336 HOH HOH . S 5 HOH A 2 337 337 HOH HOH . S 5 HOH A 3 338 338 HOH HOH . S 5 HOH A 4 339 339 HOH HOH . S 5 HOH A 5 340 340 HOH HOH . S 5 HOH A 6 341 341 HOH HOH . S 5 HOH A 7 342 342 HOH HOH . S 5 HOH A 8 343 343 HOH HOH . S 5 HOH A 9 344 344 HOH HOH . S 5 HOH A 10 345 345 HOH HOH . S 5 HOH A 11 346 346 HOH HOH . S 5 HOH A 12 347 347 HOH HOH . S 5 HOH A 13 348 348 HOH HOH . S 5 HOH A 14 349 349 HOH HOH . S 5 HOH A 15 350 350 HOH HOH . S 5 HOH A 16 351 351 HOH HOH . S 5 HOH A 17 352 352 HOH HOH . S 5 HOH A 18 353 353 HOH HOH . S 5 HOH A 19 354 354 HOH HOH . S 5 HOH A 20 355 355 HOH HOH . S 5 HOH A 21 356 356 HOH HOH . S 5 HOH A 22 357 357 HOH HOH . S 5 HOH A 23 358 358 HOH HOH . S 5 HOH A 24 359 359 HOH HOH . S 5 HOH A 25 360 360 HOH HOH . S 5 HOH A 26 361 361 HOH HOH . S 5 HOH A 27 362 362 HOH HOH . S 5 HOH A 28 363 363 HOH HOH . S 5 HOH A 29 364 364 HOH HOH . S 5 HOH A 30 365 365 HOH HOH . S 5 HOH A 31 366 366 HOH HOH . S 5 HOH A 32 367 367 HOH HOH . S 5 HOH A 33 368 368 HOH HOH . S 5 HOH A 34 369 369 HOH HOH . S 5 HOH A 35 370 370 HOH HOH . S 5 HOH A 36 371 371 HOH HOH . S 5 HOH A 37 372 372 HOH HOH . S 5 HOH A 38 375 375 HOH HOH . S 5 HOH A 39 376 376 HOH HOH . S 5 HOH A 40 377 377 HOH HOH . S 5 HOH A 41 378 378 HOH HOH . S 5 HOH A 42 379 379 HOH HOH . S 5 HOH A 43 380 380 HOH HOH . S 5 HOH A 44 381 381 HOH HOH . S 5 HOH A 45 382 382 HOH HOH . S 5 HOH A 46 383 383 HOH HOH . S 5 HOH A 47 384 384 HOH HOH . T 5 HOH C 1 373 373 HOH HOH . T 5 HOH C 2 374 374 HOH HOH . T 5 HOH C 3 385 385 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . I 2 19.676 51.624 174.165 1 37.83 ? S SO4 8 B 1 HETATM 2 O O1 SO4 . . . I 2 20.995 51.316 174.86 1 36.9 ? O1 SO4 8 B 1 HETATM 3 O O2 SO4 . . . I 2 18.591 51.53 175.217 1 37.36 ? O2 SO4 8 B 1 HETATM 4 O O3 SO4 . . . I 2 19.435 50.603 173.059 1 36.92 ? O3 SO4 8 B 1 HETATM 5 O O4 SO4 . . . I 2 19.682 53.018 173.544 1 36.63 ? O4 SO4 8 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 5 #