data_2LH3
#
_model_server_result.job_id            26QB7JuIcspkFa0s4HgL3g 
_model_server_result.datetime_utc      '2024-12-26 12:23:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2lh3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":155}' 
#
_entry.id    2LH3 
#
_exptl.entry_id    2LH3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         98.9 
_cell.entry_id            2LH3 
_cell.length_a            93.19 
_cell.length_b            38.41 
_cell.length_c            52.07 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2LH3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'B 1 1 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 97 A HIS 97 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? 
metalc ? metalc2 B C CYN . A CYN 154 1_555 C FE HEM . A HEM 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 117 n n 
CHA C4D HEM doub 118 n n 
CHA HHA HEM sing 119 n n 
CHB C4A HEM sing 120 n n 
CHB C1B HEM doub 121 n n 
CHB HHB HEM sing 122 n n 
CHC C4B HEM sing 123 n n 
CHC C1C HEM doub 124 n n 
CHC HHC HEM sing 125 n n 
CHD C4C HEM doub 126 n n 
CHD C1D HEM sing 127 n n 
CHD HHD HEM sing 128 n n 
C1A C2A HEM doub 129 n y 
C1A NA HEM sing 130 n y 
C2A C3A HEM sing 131 n y 
C2A CAA HEM sing 132 n n 
C3A C4A HEM doub 133 n y 
C3A CMA HEM sing 134 n n 
C4A NA HEM sing 135 n y 
CMA HMA HEM sing 136 n n 
CMA HMAA HEM sing 137 n n 
CMA HMAB HEM sing 138 n n 
CAA CBA HEM sing 139 n n 
CAA HAA HEM sing 140 n n 
CAA HAAA HEM sing 141 n n 
CBA CGA HEM sing 142 n n 
CBA HBA HEM sing 143 n n 
CBA HBAA HEM sing 144 n n 
CGA O1A HEM doub 145 n n 
CGA O2A HEM sing 146 n n 
C1B C2B HEM sing 147 n n 
C1B NB HEM sing 148 n n 
C2B C3B HEM doub 149 n n 
C2B CMB HEM sing 150 n n 
C3B C4B HEM sing 151 n n 
C3B CAB HEM sing 152 n n 
C4B NB HEM doub 153 n n 
CMB HMB HEM sing 154 n n 
CMB HMBA HEM sing 155 n n 
CMB HMBB HEM sing 156 n n 
CAB CBB HEM doub 157 n n 
CAB HAB HEM sing 158 n n 
CBB HBB HEM sing 159 n n 
CBB HBBA HEM sing 160 n n 
C1C C2C HEM sing 161 n y 
C1C NC HEM sing 162 n y 
C2C C3C HEM doub 163 n y 
C2C CMC HEM sing 164 n n 
C3C C4C HEM sing 165 n y 
C3C CAC HEM sing 166 n n 
C4C NC HEM sing 167 n y 
CMC HMC HEM sing 168 n n 
CMC HMCA HEM sing 169 n n 
CMC HMCB HEM sing 170 n n 
CAC CBC HEM doub 171 n n 
CAC HAC HEM sing 172 n n 
CBC HBC HEM sing 173 n n 
CBC HBCA HEM sing 174 n n 
C1D C2D HEM sing 175 n n 
C1D ND HEM doub 176 n n 
C2D C3D HEM doub 177 n n 
C2D CMD HEM sing 178 n n 
C3D C4D HEM sing 179 n n 
C3D CAD HEM sing 180 n n 
C4D ND HEM sing 181 n n 
CMD HMD HEM sing 182 n n 
CMD HMDA HEM sing 183 n n 
CMD HMDB HEM sing 184 n n 
CAD CBD HEM sing 185 n n 
CAD HAD HEM sing 186 n n 
CAD HADA HEM sing 187 n n 
CBD CGD HEM sing 188 n n 
CBD HBD HEM sing 189 n n 
CBD HBDA HEM sing 190 n n 
CGD O1D HEM doub 191 n n 
CGD O2D HEM sing 192 n n 
O2A H2A HEM sing 193 n n 
O2D H2D HEM sing 194 n n 
FE NA HEM sing 195 n n 
FE NB HEM sing 196 n n 
FE NC HEM sing 197 n n 
FE ND HEM sing 198 n n 
#
_atom_sites.entry_id                     2LH3 
_atom_sites.fract_transf_matrix[1][1]    0.010731 
_atom_sites.fract_transf_matrix[1][2]    0.00168 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.026352 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019205 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CYN A 1 154 101 CYN CYN . 
C 3 HEM A 1 155 1 HEM HEM . 
D 4 HOH A 1 156 2 HOH HOH . 
D 4 HOH A 2 157 3 HOH HOH . 
D 4 HOH A 3 158 4 HOH HOH . 
D 4 HOH A 4 159 5 HOH HOH . 
D 4 HOH A 5 160 6 HOH HOH . 
D 4 HOH A 6 161 7 HOH HOH . 
D 4 HOH A 7 162 8 HOH HOH . 
D 4 HOH A 8 163 9 HOH HOH . 
D 4 HOH A 9 164 10 HOH HOH . 
D 4 HOH A 10 165 11 HOH HOH . 
D 4 HOH A 11 166 12 HOH HOH . 
D 4 HOH A 12 167 13 HOH HOH . 
D 4 HOH A 13 168 14 HOH HOH . 
D 4 HOH A 14 169 15 HOH HOH . 
D 4 HOH A 15 170 16 HOH HOH . 
D 4 HOH A 16 171 17 HOH HOH . 
D 4 HOH A 17 172 18 HOH HOH . 
D 4 HOH A 18 173 19 HOH HOH . 
D 4 HOH A 19 174 20 HOH HOH . 
D 4 HOH A 20 175 21 HOH HOH . 
D 4 HOH A 21 176 22 HOH HOH . 
D 4 HOH A 22 177 23 HOH HOH . 
D 4 HOH A 23 178 24 HOH HOH . 
D 4 HOH A 24 179 25 HOH HOH . 
D 4 HOH A 25 180 26 HOH HOH . 
D 4 HOH A 26 181 27 HOH HOH . 
D 4 HOH A 27 182 28 HOH HOH . 
D 4 HOH A 28 183 29 HOH HOH . 
D 4 HOH A 29 184 30 HOH HOH . 
D 4 HOH A 30 185 31 HOH HOH . 
D 4 HOH A 31 186 32 HOH HOH . 
D 4 HOH A 32 187 33 HOH HOH . 
D 4 HOH A 33 188 34 HOH HOH . 
D 4 HOH A 34 189 35 HOH HOH . 
D 4 HOH A 35 190 36 HOH HOH . 
D 4 HOH A 36 191 37 HOH HOH . 
D 4 HOH A 37 192 38 HOH HOH . 
D 4 HOH A 38 193 39 HOH HOH . 
D 4 HOH A 39 194 40 HOH HOH . 
D 4 HOH A 40 195 41 HOH HOH . 
D 4 HOH A 41 196 42 HOH HOH . 
D 4 HOH A 42 197 43 HOH HOH . 
D 4 HOH A 43 198 44 HOH HOH . 
D 4 HOH A 44 199 45 HOH HOH . 
D 4 HOH A 45 200 46 HOH HOH . 
D 4 HOH A 46 201 47 HOH HOH . 
D 4 HOH A 47 202 48 HOH HOH . 
D 4 HOH A 48 203 49 HOH HOH . 
D 4 HOH A 49 204 50 HOH HOH . 
D 4 HOH A 50 205 51 HOH HOH . 
D 4 HOH A 51 206 52 HOH HOH . 
D 4 HOH A 52 207 53 HOH HOH . 
D 4 HOH A 53 208 54 HOH HOH . 
D 4 HOH A 54 209 55 HOH HOH . 
D 4 HOH A 55 210 56 HOH HOH . 
D 4 HOH A 56 211 57 HOH HOH . 
D 4 HOH A 57 212 58 HOH HOH . 
D 4 HOH A 58 213 59 HOH HOH . 
D 4 HOH A 59 214 60 HOH HOH . 
D 4 HOH A 60 215 61 HOH HOH . 
D 4 HOH A 61 216 62 HOH HOH . 
D 4 HOH A 62 217 63 HOH HOH . 
D 4 HOH A 63 218 64 HOH HOH . 
D 4 HOH A 64 219 65 HOH HOH . 
D 4 HOH A 65 220 66 HOH HOH . 
D 4 HOH A 66 221 67 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 3 28.143 12.827 -1.812 1 14.14 ? CHA HEM 155 A 1 
HETATM 2 C CHB HEM . . . C 3 24.796 8.811 -2.641 1 10.76 ? CHB HEM 155 A 1 
HETATM 3 C CHC HEM . . . C 3 25.243 7.341 1.942 1 6.71 ? CHC HEM 155 A 1 
HETATM 4 C CHD HEM . . . C 3 27.965 11.735 2.909 1 14.08 ? CHD HEM 155 A 1 
HETATM 5 C C1A HEM . . . C 3 27.238 11.832 -2.456 1 8.47 ? C1A HEM 155 A 1 
HETATM 6 C C2A HEM . . . C 3 26.87 11.841 -3.865 1 11.64 ? C2A HEM 155 A 1 
HETATM 7 C C3A HEM . . . C 3 25.9 10.756 -4.082 1 16.31 ? C3A HEM 155 A 1 
HETATM 8 C C4A HEM . . . C 3 25.671 10.023 -2.821 1 25.21 ? C4A HEM 155 A 1 
HETATM 9 C CMA HEM . . . C 3 25.17 10.324 -5.402 1 19.79 ? CMA HEM 155 A 1 
HETATM 10 C CAA HEM . . . C 3 27.486 12.905 -4.894 1 26.51 ? CAA HEM 155 A 1 
HETATM 11 C CBA HEM . . . C 3 28.573 12.321 -5.686 1 50.52 ? CBA HEM 155 A 1 
HETATM 12 C CGA HEM . . . C 3 29.098 13.322 -6.786 1 61.71 ? CGA HEM 155 A 1 
HETATM 13 O O1A HEM . . . C 3 30.286 13.925 -6.734 1 59.48 ? O1A HEM 155 A 1 
HETATM 14 O O2A HEM . . . C 3 28.428 13.377 -7.839 1 58.37 ? O2A HEM 155 A 1 
HETATM 15 C C1B HEM . . . C 3 24.63 8.031 -1.485 1 14.24 ? C1B HEM 155 A 1 
HETATM 16 C C2B HEM . . . C 3 23.751 6.729 -1.345 1 17.46 ? C2B HEM 155 A 1 
HETATM 17 C C3B HEM . . . C 3 23.923 6.27 -0.082 1 13.1 ? C3B HEM 155 A 1 
HETATM 18 C C4B HEM . . . C 3 24.87 7.328 0.595 1 9.04 ? C4B HEM 155 A 1 
HETATM 19 C CMB HEM . . . C 3 22.834 6.063 -2.472 1 6.41 ? CMB HEM 155 A 1 
HETATM 20 C CAB HEM . . . C 3 23.236 4.939 0.585 1 13.72 ? CAB HEM 155 A 1 
HETATM 21 C CBB HEM . . . C 3 22.856 3.795 -0.116 1 6.14 ? CBB HEM 155 A 1 
HETATM 22 C C1C HEM . . . C 3 26.015 8.412 2.632 1 14.53 ? C1C HEM 155 A 1 
HETATM 23 C C2C HEM . . . C 3 26.275 8.471 4.067 1 16.52 ? C2C HEM 155 A 1 
HETATM 24 C C3C HEM . . . C 3 26.959 9.729 4.344 1 15.16 ? C3C HEM 155 A 1 
HETATM 25 C C4C HEM . . . C 3 27.216 10.444 3.077 1 19.22 ? C4C HEM 155 A 1 
HETATM 26 C CMC HEM . . . C 3 25.796 7.315 5.06 1 9.55 ? CMC HEM 155 A 1 
HETATM 27 C CAC HEM . . . C 3 27.413 10.33 5.719 1 14.02 ? CAC HEM 155 A 1 
HETATM 28 C CBC HEM . . . C 3 26.668 11.116 6.366 1 5.29 ? CBC HEM 155 A 1 
HETATM 29 C C1D HEM . . . C 3 28.298 12.419 1.717 1 13.49 ? C1D HEM 155 A 1 
HETATM 30 C C2D HEM . . . C 3 29.143 13.752 1.577 1 16.31 ? C2D HEM 155 A 1 
HETATM 31 C C3D HEM . . . C 3 29.219 14.045 0.259 1 17.34 ? C3D HEM 155 A 1 
HETATM 32 C C4D HEM . . . C 3 28.407 12.911 -0.447 1 28.3 ? C4D HEM 155 A 1 
HETATM 33 C CMD HEM . . . C 3 29.79 14.644 2.739 1 9.55 ? CMD HEM 155 A 1 
HETATM 34 C CAD HEM . . . C 3 29.961 15.357 -0.383 1 17.17 ? CAD HEM 155 A 1 
HETATM 35 C CBD HEM . . . C 3 29.008 16.405 -0.62 1 21.34 ? CBD HEM 155 A 1 
HETATM 36 C CGD HEM . . . C 3 29.855 17.8 -0.838 1 41.06 ? CGD HEM 155 A 1 
HETATM 37 O O1D HEM . . . C 3 30.543 18.362 0.115 1 38.18 ? O1D HEM 155 A 1 
HETATM 38 O O2D HEM . . . C 3 29.653 18.502 -1.843 1 44.36 ? O2D HEM 155 A 1 
HETATM 39 N NA HEM . . . C 3 26.486 10.712 -1.856 1 19.07 ? NA HEM 155 A 1 
HETATM 40 N NB HEM . . . C 3 25.282 8.36 -0.297 1 13.65 ? NB HEM 155 A 1 
HETATM 41 N NC HEM . . . C 3 26.618 9.621 2.074 1 10.15 ? NC HEM 155 A 1 
HETATM 42 N ND HEM . . . C 3 27.876 11.953 0.475 1 18.46 ? ND HEM 155 A 1 
HETATM 43 FE FE HEM . . . C 3 26.528 10.225 0.212 1 13.96 ? FE HEM 155 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           32 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           656 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#