data_2LH8 # _model_server_result.job_id JjfS7G1zjeAGdC2KKiKGFQ _model_server_result.datetime_utc '2025-03-04 17:02:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2lh8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 2LH8 # _exptl.entry_id 2LH8 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 265.355 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H17 N4 O S 1' _chem_comp.formula_weight 265.355 _chem_comp.id VIB _chem_comp.mon_nstd_flag . _chem_comp.name 3-(4-AMINO-2-METHYL-PYRIMIDIN-5-YLMETHYL)-5-(2-HYDROXY-ETHYL)-4-METHYL-THIAZOL-3-IUM _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'THIAMIN;VITAMIN B1' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CM2 C2A VIB sing 374 n n CM2 HM21 VIB sing 375 n n CM2 HM22 VIB sing 376 n n CM2 HM23 VIB sing 377 n n N4A C4A VIB sing 378 n n N4A H4A1 VIB sing 379 n n N4A H4A2 VIB sing 380 n n CM4 C4 VIB sing 381 n n CM4 HM41 VIB sing 382 n n CM4 HM42 VIB sing 383 n n CM4 HM43 VIB sing 384 n n O1 C7 VIB sing 385 n n O1 HO1 VIB sing 386 n n C7 C6 VIB sing 387 n n C7 HC71 VIB sing 388 n n C7 HC72 VIB sing 389 n n C6 C5 VIB sing 390 n n C6 HC61 VIB sing 391 n n C6 HC62 VIB sing 392 n n C2 S1 VIB sing 393 n y C2 N3 VIB doub 394 n y C2 HC2 VIB sing 395 n n S1 C5 VIB sing 396 n y C5 C4 VIB doub 397 n y C4 N3 VIB sing 398 n y N3 C7A VIB sing 399 n n C7A C5A VIB sing 400 n n C7A H7A1 VIB sing 401 n n C7A H7A2 VIB sing 402 n n C4A N3A VIB sing 403 n y C4A C5A VIB doub 404 n y N3A C2A VIB doub 405 n y C2A N1A VIB sing 406 n y N1A C6A VIB doub 407 n y C6A C5A VIB sing 408 n y C6A H6AC VIB sing 409 n n # _atom_sites.entry_id 2LH8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id VIB _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id VIB _pdbx_nonpoly_scheme.auth_mon_id VB1 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CM2 VIB . . . B 2 -7.15 5.345 8.587 1 20 ? CM2 VIB 1 A 1 HETATM 2 N N4A VIB . . . B 2 -11.036 7.878 9.697 1 20 ? N4A VIB 1 A 1 HETATM 3 C CM4 VIB . . . B 2 -15.034 9.452 6.915 1 20 ? CM4 VIB 1 A 1 HETATM 4 O O1 VIB . . . B 2 -15.568 12.601 4.109 1 20 ? O1 VIB 1 A 1 HETATM 5 C C7 VIB . . . B 2 -15.671 11.183 3.971 1 20 ? C7 VIB 1 A 1 HETATM 6 C C6 VIB . . . B 2 -14.256 10.583 3.969 1 20 ? C6 VIB 1 A 1 HETATM 7 C C2 VIB . . . B 2 -11.657 10.25 6.774 1 20 ? C2 VIB 1 A 1 HETATM 8 S S1 VIB . . . B 2 -12.241 11.511 5.753 1 20 ? S1 VIB 1 A 1 HETATM 9 C C5 VIB . . . B 2 -13.633 10.606 5.355 1 20 ? C5 VIB 1 A 1 HETATM 10 C C4 VIB . . . B 2 -13.73 9.511 6.17 1 20 ? C4 VIB 1 A 1 HETATM 11 N N3 VIB . . . B 2 -12.497 9.155 6.734 1 20 ? N3 VIB 1 A 1 HETATM 12 C C7A VIB . . . B 2 -12.128 7.737 6.975 1 20 ? C7A VIB 1 A 1 HETATM 13 C C4A VIB . . . B 2 -10.299 7.285 8.723 1 20 ? C4A VIB 1 A 1 HETATM 14 N N3A VIB . . . B 2 -9.162 6.666 9.113 1 20 ? N3A VIB 1 A 1 HETATM 15 C C2A VIB . . . B 2 -8.388 6.112 8.154 1 20 ? C2A VIB 1 A 1 HETATM 16 N N1A VIB . . . B 2 -8.682 6.156 6.837 1 20 ? N1A VIB 1 A 1 HETATM 17 C C6A VIB . . . B 2 -9.867 6.692 6.472 1 20 ? C6A VIB 1 A 1 HETATM 18 C C5A VIB . . . B 2 -10.718 7.31 7.39 1 20 ? C5A VIB 1 A 1 HETATM 19 H HM21 VIB . . . B 2 -6.38 5.376 7.815 1 0 ? HM21 VIB 1 A 1 HETATM 20 H HM22 VIB . . . B 2 -6.724 5.761 9.501 1 0 ? HM22 VIB 1 A 1 HETATM 21 H HM23 VIB . . . B 2 -7.405 4.3 8.778 1 0 ? HM23 VIB 1 A 1 HETATM 22 H H4A1 VIB . . . B 2 -10.514 8.115 10.53 1 0 ? H4A1 VIB 1 A 1 HETATM 23 H H4A2 VIB . . . B 2 -11.706 8.558 9.351 1 0 ? H4A2 VIB 1 A 1 HETATM 24 H HM41 VIB . . . B 2 -14.951 8.882 7.84 1 0 ? HM41 VIB 1 A 1 HETATM 25 H HM42 VIB . . . B 2 -15.348 10.461 7.195 1 0 ? HM42 VIB 1 A 1 HETATM 26 H HM43 VIB . . . B 2 -15.831 9.04 6.295 1 0 ? HM43 VIB 1 A 1 HETATM 27 H HO1 VIB . . . B 2 -16.478 12.954 4.116 1 0 ? HO1 VIB 1 A 1 HETATM 28 H HC71 VIB . . . B 2 -16.167 10.95 3.022 1 0 ? HC71 VIB 1 A 1 HETATM 29 H HC72 VIB . . . B 2 -16.277 10.759 4.776 1 0 ? HC72 VIB 1 A 1 HETATM 30 H HC61 VIB . . . B 2 -13.658 11.136 3.246 1 0 ? HC61 VIB 1 A 1 HETATM 31 H HC62 VIB . . . B 2 -14.319 9.553 3.604 1 0 ? HC62 VIB 1 A 1 HETATM 32 H HC2 VIB . . . B 2 -10.672 10.239 7.213 1 0 ? HC2 VIB 1 A 1 HETATM 33 H H7A1 VIB . . . B 2 -12.811 7.344 7.723 1 0 ? H7A1 VIB 1 A 1 HETATM 34 H H7A2 VIB . . . B 2 -12.338 7.205 6.046 1 0 ? H7A2 VIB 1 A 1 HETATM 35 H H6AC VIB . . . B 2 -10.114 6.628 5.413 1 0 ? H6AC VIB 1 A 1 # _model_server_stats.io_time_ms 4 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 35 #