data_2LYB # _model_server_result.job_id 2b1YufXsfNS2cmxm0zeCpg _model_server_result.datetime_utc '2024-11-22 05:29:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2lyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":300}' # _entry.id 2LYB # _exptl.entry_id 2LYB _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 511.543 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H42 N O10 P' _chem_comp.formula_weight 511.543 _chem_comp.id 8SP _chem_comp.mon_nstd_flag n _chem_comp.name O-[(R)-{[(2R)-2,3-bis(octanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA 8SP sing 1 n n N H 8SP sing 2 n n N H2 8SP sing 3 n n P OG 8SP sing 4 n n P O2P 8SP doub 5 n n P O3G 8SP sing 6 n n P O3P 8SP sing 7 n n OG CB 8SP sing 8 n n C1A O1A 8SP doub 9 n n C1A O1G 8SP sing 10 n n C1A C2A 8SP sing 11 n n C1B O1B 8SP doub 12 n n C1B C2B 8SP sing 13 n n C1B O2G 8SP sing 14 n n CB CA 8SP sing 15 n n CB HB3 8SP sing 16 n n CB HB2 8SP sing 17 n n C1G O1G 8SP sing 18 n n C1G C2G 8SP sing 19 n n C1G H11G 8SP sing 20 n n C1G H21G 8SP sing 21 n n C2A C3A 8SP sing 22 n n C2A H12A 8SP sing 23 n n C2A H22A 8SP sing 24 n n C2B C3B 8SP sing 25 n n C2B H12B 8SP sing 26 n n C2B H22B 8SP sing 27 n n CA C 8SP sing 28 n n CA HA 8SP sing 29 n n C2G O2G 8SP sing 30 n n C2G C3G 8SP sing 31 n n C2G H2G 8SP sing 32 n n C3A C4A 8SP sing 33 n n C3A H13A 8SP sing 34 n n C3A H23A 8SP sing 35 n n C3B C4B 8SP sing 36 n n C3B H13B 8SP sing 37 n n C3B H23B 8SP sing 38 n n C O 8SP doub 39 n n C OXT 8SP sing 40 n n C3G O3G 8SP sing 41 n n C3G H13G 8SP sing 42 n n C3G H23G 8SP sing 43 n n C4A C5A 8SP sing 44 n n C4A H14A 8SP sing 45 n n C4A H24A 8SP sing 46 n n C4B C5B 8SP sing 47 n n C4B H14B 8SP sing 48 n n C4B H24B 8SP sing 49 n n C5A C6A 8SP sing 50 n n C5A H15A 8SP sing 51 n n C5A H25A 8SP sing 52 n n C5B C6B 8SP sing 53 n n C5B H15B 8SP sing 54 n n C5B H25B 8SP sing 55 n n C6A C7A 8SP sing 56 n n C6A H16A 8SP sing 57 n n C6A H26A 8SP sing 58 n n C6B C7B 8SP sing 59 n n C6B H16B 8SP sing 60 n n C6B H26B 8SP sing 61 n n C7A C8A 8SP sing 62 n n C7A H17A 8SP sing 63 n n C7A H27A 8SP sing 64 n n C7B C8B 8SP sing 65 n n C7B H17B 8SP sing 66 n n C7B H27B 8SP sing 67 n n C8A H18A 8SP sing 68 n n C8A H28A 8SP sing 69 n n C8A H38A 8SP sing 70 n n C8B H18B 8SP sing 71 n n C8B H28B 8SP sing 72 n n C8B H38B 8SP sing 73 n n OXT HXT 8SP sing 74 n n O3P H42 8SP sing 75 n n # _atom_sites.entry_id 2LYB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 8SP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 300 _pdbx_nonpoly_scheme.auth_seq_num 300 _pdbx_nonpoly_scheme.pdb_mon_id 8SP _pdbx_nonpoly_scheme.auth_mon_id 8SP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N 8SP . . . B 2 -7.482 -26.781 4.65 1 0.13 ? N 8SP 300 A 1 HETATM 2 P P 8SP . . . B 2 -2.907 -25.842 6.651 1 31.1 ? P 8SP 300 A 1 HETATM 3 O OG 8SP . . . B 2 -4.477 -25.566 6.534 1 44.42 ? OG 8SP 300 A 1 HETATM 4 C C1A 8SP . . . B 2 -2.147 -30.21 2.325 1 35.41 ? C1A 8SP 300 A 1 HETATM 5 O O1A 8SP . . . B 2 -3.299 -30.245 2.822 1 72.02 ? O1A 8SP 300 A 1 HETATM 6 C C1B 8SP . . . B 2 0.436 -25.533 2.323 1 42.11 ? C1B 8SP 300 A 1 HETATM 7 O O1B 8SP . . . B 2 0.525 -25.725 1.087 1 4.12 ? O1B 8SP 300 A 1 HETATM 8 C CB 8SP . . . B 2 -5.284 -26.455 5.731 1 54.3 ? CB 8SP 300 A 1 HETATM 9 C C1G 8SP . . . B 2 -2.013 -27.717 2.172 1 54.12 ? C1G 8SP 300 A 1 HETATM 10 O O1G 8SP . . . B 2 -1.645 -29.053 1.809 1 40.33 ? O1G 8SP 300 A 1 HETATM 11 C C2A 8SP . . . B 2 -1.27 -31.4 2.292 1 52.14 ? C2A 8SP 300 A 1 HETATM 12 C C2B 8SP . . . B 2 1.52 -24.882 3.091 1 42.53 ? C2B 8SP 300 A 1 HETATM 13 C CA 8SP . . . B 2 -6.53 -25.76 5.125 1 31.33 ? CA 8SP 300 A 1 HETATM 14 C C2G 8SP . . . B 2 -1.147 -27.21 3.351 1 41.54 ? C2G 8SP 300 A 1 HETATM 15 O O2G 8SP . . . B 2 -0.693 -25.889 3.004 1 21.13 ? O2G 8SP 300 A 1 HETATM 16 O O2P 8SP . . . B 2 -2.195 -24.808 7.405 1 43.31 ? O2P 8SP 300 A 1 HETATM 17 C C3A 8SP . . . B 2 -1.655 -32.546 3.268 1 53.4 ? C3A 8SP 300 A 1 HETATM 18 C C3B 8SP . . . B 2 2.165 -23.639 2.413 1 65.41 ? C3B 8SP 300 A 1 HETATM 19 C C 8SP . . . B 2 -6.206 -24.857 4.004 1 13.4 ? C 8SP 300 A 1 HETATM 20 O O 8SP . . . B 2 -5.119 -24.238 3.962 1 73.44 ? O 8SP 300 A 1 HETATM 21 O OXT 8SP . . . B 2 -7.068 -24.713 2.968 1 54.54 ? OXT 8SP 300 A 1 HETATM 22 C C3G 8SP . . . B 2 -1.891 -27.252 4.715 1 72.34 ? C3G 8SP 300 A 1 HETATM 23 O O3G 8SP . . . B 2 -2.318 -25.942 5.164 1 42.55 ? O3G 8SP 300 A 1 HETATM 24 O O3P 8SP . . . B 2 -2.696 -27.251 7.34 1 65.5 ? O3P 8SP 300 A 1 HETATM 25 C C4A 8SP . . . B 2 -0.693 -33.76 3.162 1 75 ? C4A 8SP 300 A 1 HETATM 26 C C4B 8SP . . . B 2 3.712 -23.604 2.561 1 14.1 ? C4B 8SP 300 A 1 HETATM 27 C C5A 8SP . . . B 2 -0.895 -34.788 4.306 1 33.34 ? C5A 8SP 300 A 1 HETATM 28 C C5B 8SP . . . B 2 4.312 -22.21 2.234 1 10.43 ? C5B 8SP 300 A 1 HETATM 29 C C6A 8SP . . . B 2 -0.037 -34.463 5.559 1 35.32 ? C6A 8SP 300 A 1 HETATM 30 C C6B 8SP . . . B 2 4.974 -22.149 0.831 1 55.14 ? C6B 8SP 300 A 1 HETATM 31 C C7A 8SP . . . B 2 -0.768 -34.804 6.886 1 22.13 ? C7A 8SP 300 A 1 HETATM 32 C C7B 8SP . . . B 2 4.222 -21.201 -0.142 1 2.53 ? C7B 8SP 300 A 1 HETATM 33 C C8A 8SP . . . B 2 0.043 -34.397 8.136 1 4.11 ? C8A 8SP 300 A 1 HETATM 34 C C8B 8SP . . . B 2 5.163 -20.221 -0.88 1 4.13 ? C8B 8SP 300 A 1 HETATM 35 H H2 8SP . . . B 2 -8.154 -26.994 5.395 1 53.34 ? H2 8SP 300 A 1 HETATM 36 H HB3 8SP . . . B 2 -5.634 -27.217 6.43 1 53.42 ? HB3 8SP 300 A 1 HETATM 37 H HB2 8SP . . . B 2 -4.731 -26.991 4.954 1 71.31 ? HB2 8SP 300 A 1 HETATM 38 H H11G 8SP . . . B 2 -1.875 -27.059 1.31 1 61.5 ? H11G 8SP 300 A 1 HETATM 39 H H21G 8SP . . . B 2 -3.068 -27.692 2.457 1 20.44 ? H21G 8SP 300 A 1 HETATM 40 H H 8SP . . . B 2 -6.978 -27.635 4.397 1 51.03 ? H 8SP 300 A 1 HETATM 41 H H12A 8SP . . . B 2 -1.266 -31.786 1.27 1 43.3 ? H12A 8SP 300 A 1 HETATM 42 H H22A 8SP . . . B 2 -0.259 -31.063 2.531 1 61.12 ? H22A 8SP 300 A 1 HETATM 43 H H12B 8SP . . . B 2 2.296 -25.626 3.281 1 72.51 ? H12B 8SP 300 A 1 HETATM 44 H H22B 8SP . . . B 2 1.1 -24.579 4.053 1 22.35 ? H22B 8SP 300 A 1 HETATM 45 H HA 8SP . . . B 2 -7.028 -25.19 5.914 1 23.05 ? HA 8SP 300 A 1 HETATM 46 H H2G 8SP . . . B 2 -0.274 -27.867 3.417 1 61.13 ? H2G 8SP 300 A 1 HETATM 47 H H13A 8SP . . . B 2 -2.677 -32.871 3.048 1 20.02 ? H13A 8SP 300 A 1 HETATM 48 H H23A 8SP . . . B 2 -1.629 -32.168 4.294 1 1.5 ? H23A 8SP 300 A 1 HETATM 49 H H13B 8SP . . . B 2 1.753 -22.733 2.865 1 5.53 ? H13B 8SP 300 A 1 HETATM 50 H H23B 8SP . . . B 2 1.903 -23.642 1.351 1 64.34 ? H23B 8SP 300 A 1 HETATM 51 H H13G 8SP . . . B 2 -2.692 -27.998 4.648 1 41.1 ? H13G 8SP 300 A 1 HETATM 52 H H23G 8SP . . . B 2 -1.202 -27.627 5.473 1 75.52 ? H23G 8SP 300 A 1 HETATM 53 H H14A 8SP . . . B 2 0.337 -33.395 3.189 1 50.44 ? H14A 8SP 300 A 1 HETATM 54 H H24A 8SP . . . B 2 -0.852 -34.261 2.202 1 4.14 ? H24A 8SP 300 A 1 HETATM 55 H H14B 8SP . . . B 2 4.154 -24.348 1.892 1 10.43 ? H14B 8SP 300 A 1 HETATM 56 H H24B 8SP . . . B 2 3.972 -23.872 3.589 1 61.33 ? H24B 8SP 300 A 1 HETATM 57 H H15A 8SP . . . B 2 -0.631 -35.784 3.938 1 52.53 ? H15A 8SP 300 A 1 HETATM 58 H H25A 8SP . . . B 2 -1.95 -34.801 4.596 1 54.44 ? H25A 8SP 300 A 1 HETATM 59 H H15B 8SP . . . B 2 5.065 -21.959 2.987 1 14.24 ? H15B 8SP 300 A 1 HETATM 60 H H25B 8SP . . . B 2 3.516 -21.462 2.288 1 11.31 ? H25B 8SP 300 A 1 HETATM 61 H H16A 8SP . . . B 2 0.209 -33.397 5.552 1 34.35 ? H16A 8SP 300 A 1 HETATM 62 H H26A 8SP . . . B 2 0.896 -35.03 5.512 1 3.24 ? H26A 8SP 300 A 1 HETATM 63 H H16B 8SP . . . B 2 4.995 -23.154 0.401 1 60.24 ? H16B 8SP 300 A 1 HETATM 64 H H26B 8SP . . . B 2 6.005 -21.803 0.94 1 65.12 ? H26B 8SP 300 A 1 HETATM 65 H H17A 8SP . . . B 2 -0.956 -35.88 6.928 1 14.4 ? H17A 8SP 300 A 1 HETATM 66 H H27A 8SP . . . B 2 -1.731 -34.289 6.915 1 52.42 ? H27A 8SP 300 A 1 HETATM 67 H H17B 8SP . . . B 2 3.486 -20.616 0.417 1 53.51 ? H17B 8SP 300 A 1 HETATM 68 H H27B 8SP . . . B 2 3.689 -21.796 -0.887 1 13.11 ? H27B 8SP 300 A 1 HETATM 69 H H18A 8SP . . . B 2 0.659 -35.236 8.465 1 1.34 ? H18A 8SP 300 A 1 HETATM 70 H H28A 8SP . . . B 2 0.697 -33.552 7.908 1 24.15 ? H28A 8SP 300 A 1 HETATM 71 H H38A 8SP . . . B 2 -0.628 -34.117 8.952 1 65.24 ? H38A 8SP 300 A 1 HETATM 72 H H18B 8SP . . . B 2 5.016 -20.289 -1.959 1 11.01 ? H18B 8SP 300 A 1 HETATM 73 H H28B 8SP . . . B 2 4.95 -19.197 -0.564 1 70.13 ? H28B 8SP 300 A 1 HETATM 74 H H38B 8SP . . . B 2 6.206 -20.445 -0.647 1 25.31 ? H38B 8SP 300 A 1 HETATM 75 H HNB 8SP . . . B 2 -7.982 -26.424 3.832 1 33.31 ? HNB 8SP 300 A 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 72 _model_server_stats.query_time_ms 7793 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 75 #