data_2LYG # _model_server_result.job_id CTcNbYWRtk6dtSN49t2OAA _model_server_result.datetime_utc '2025-03-06 10:07:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2lyg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2LYG # _exptl.entry_id 2LYG _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 208.209 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-hydroxyethyl 6-deoxy-beta-L-galactopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2LYG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2LYG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A P DG 1 A DG 1 1_555 B O11 1CF . A 1CF 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.599 ? hydrog TYPE_6_PAIR hydrog1 A N1 DG 1 A DG 1 1_555 A O6 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 A N2 DG 1 A DG 1 1_555 A N7 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 A N7 DG 1 A DG 1 1_555 A N2 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 A O6 DG 1 A DG 1 1_555 A N1 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 A N7 DG 2 A DG 2 1_555 A N2 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 A O6 DG 2 A DG 2 1_555 A N1 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 A N1 DG 2 A DG 2 1_555 A O6 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 A N2 DG 2 A DG 2 1_555 A N7 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 A N7 DG 5 A DG 5 1_555 A N2 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 A O6 DG 5 A DG 5 1_555 A N1 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 A N1 DG 6 A DG 6 1_555 A O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 A N2 DG 6 A DG 6 1_555 A N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 A N1 DG 10 A DG 10 1_555 A O6 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 A N2 DG 10 A DG 10 1_555 A N7 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog15 A N7 DG 11 A DG 11 1_555 A N2 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 A O6 DG 11 A DG 11 1_555 A N1 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C8 H16 O6' _chem_comp.formula_weight 208.209 _chem_comp.id 1CF _chem_comp.mon_nstd_flag n _chem_comp.name '2-hydroxyethyl 6-deoxy-beta-L-galactopyranoside' _chem_comp.type l-saccharide _chem_comp.pdbx_synonyms '2-hydroxyethyl 6-deoxy-beta-L-galactoside;2-hydroxyethyl 6-deoxy-L-galactoside;2-hydroxyethyl 6-deoxy-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O11 C11 1CF sing 1 n n C11 C12 1CF sing 2 n n C12 O1 1CF sing 3 n n O1 C1 1CF sing 4 n n C1 O5 1CF sing 5 n n C1 C2 1CF sing 6 n n O5 C5 1CF sing 7 n n C5 C6 1CF sing 8 n n C5 C4 1CF sing 9 n n O2 C2 1CF sing 10 n n C2 C3 1CF sing 11 n n C3 C4 1CF sing 12 n n C3 O3 1CF sing 13 n n C4 O4 1CF sing 14 n n C4 H4 1CF sing 15 n n C5 H5 1CF sing 16 n n C6 H61 1CF sing 17 n n C6 H62 1CF sing 18 n n C6 H63 1CF sing 19 n n C11 H11 1CF sing 20 n n C11 H12 1CF sing 21 n n C12 H21 1CF sing 22 n n C12 H22 1CF sing 23 n n C3 H3 1CF sing 24 n n O11 H6 1CF sing 25 n n C1 H1 1CF sing 26 n n C2 H2 1CF sing 27 n n O2 HO2 1CF sing 28 n n O3 HO3 1CF sing 29 n n O4 HO4 1CF sing 30 n n # _atom_sites.entry_id 2LYG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id 1CF _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 17 _pdbx_nonpoly_scheme.pdb_mon_id 1CF _pdbx_nonpoly_scheme.auth_mon_id FUL _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 1CF . . . B 2 4.089 5.864 5.869 1 8 ? C4 1CF 101 A 1 HETATM 2 C C5 1CF . . . B 2 4.119 6.214 4.376 1 8 ? C5 1CF 101 A 1 HETATM 3 C C6 1CF . . . B 2 2.95 5.661 3.573 1 8 ? C6 1CF 101 A 1 HETATM 4 C C11 1CF . . . B 2 9.455 6.513 2.356 1 8 ? C11 1CF 101 A 1 HETATM 5 C C12 1CF . . . B 2 8.911 6.345 3.767 1 8 ? C12 1CF 101 A 1 HETATM 6 C C3 1CF . . . B 2 5.327 6.453 6.56 1 8 ? C3 1CF 101 A 1 HETATM 7 O O11 1CF . . . B 2 10.727 5.925 2.255 1 8 ? O11 1CF 101 A 1 HETATM 8 C C1 1CF . . . B 2 6.577 6.196 4.375 1 8 ? C1 1CF 101 A 1 HETATM 9 C C2 1CF . . . B 2 6.615 5.937 5.893 1 8 ? C2 1CF 101 A 1 HETATM 10 O O2 1CF . . . B 2 7.762 6.638 6.434 1 8 ? O2 1CF 101 A 1 HETATM 11 O O3 1CF . . . B 2 5.332 6.078 7.949 1 8 ? O3 1CF 101 A 1 HETATM 12 O O4 1CF . . . B 2 4.121 4.431 6.009 1 8 ? O4 1CF 101 A 1 HETATM 13 O O5 1CF . . . B 2 5.34 5.661 3.79 1 8 ? O5 1CF 101 A 1 HETATM 14 O O1 1CF . . . B 2 7.728 5.562 3.741 1 8 ? O1 1CF 101 A 1 HETATM 15 H H4 1CF . . . B 2 3.178 6.253 6.323 1 8 ? H4 1CF 101 A 1 HETATM 16 H H5 1CF . . . B 2 4.145 7.3 4.276 1 8 ? H5 1CF 101 A 1 HETATM 17 H H61 1CF . . . B 2 3.124 4.632 3.251 1 8 ? H61 1CF 101 A 1 HETATM 18 H H62 1CF . . . B 2 2.753 6.261 2.675 1 8 ? H62 1CF 101 A 1 HETATM 19 H H63 1CF . . . B 2 2.051 5.66 4.182 1 8 ? H63 1CF 101 A 1 HETATM 20 H H11 1CF . . . B 2 9.532 7.578 2.146 1 8 ? H11 1CF 101 A 1 HETATM 21 H H12 1CF . . . B 2 8.767 6.047 1.646 1 8 ? H12 1CF 101 A 1 HETATM 22 H H21 1CF . . . B 2 9.644 5.851 4.408 1 8 ? H21 1CF 101 A 1 HETATM 23 H H22 1CF . . . B 2 8.712 7.342 4.16 1 8 ? H22 1CF 101 A 1 HETATM 24 H H3 1CF . . . B 2 5.275 7.542 6.505 1 8 ? H3 1CF 101 A 1 HETATM 25 H H1 1CF . . . B 2 6.605 7.27 4.2 1 8 ? H1 1CF 101 A 1 HETATM 26 H H2 1CF . . . B 2 6.716 4.864 6.079 1 8 ? H2 1CF 101 A 1 HETATM 27 H HO2 1CF . . . B 2 7.555 6.999 7.297 1 8 ? HO2 1CF 101 A 1 HETATM 28 H HO3 1CF . . . B 2 4.62 5.443 8.09 1 8 ? HO3 1CF 101 A 1 HETATM 29 H HO4 1CF . . . B 2 4.413 4.021 5.181 1 8 ? HO4 1CF 101 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 3696 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #