data_2M3G # _model_server_result.job_id KYH5h6U9sCMnk9Ngx4ZQFQ _model_server_result.datetime_utc '2025-01-02 19:39:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2m3g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 2M3G # _exptl.entry_id 2M3G _exptl.method 'SOLID-STATE NMR' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2M3G _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2M3G _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 210 A LYS 210 1_555 D C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 doub covale ? covale2 B NZ LYS 210 B LYS 210 1_555 E C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 doub covale ? covale3 C NZ LYS 210 C LYS 210 1_555 F C15 RET . C RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 doub # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 275 n n C1 C6 RET sing 276 n n C1 C16 RET sing 277 n n C1 C17 RET sing 278 n n C2 C3 RET sing 279 n n C2 H21 RET sing 280 n n C2 H22 RET sing 281 n n C3 C4 RET sing 282 n n C3 H31 RET sing 283 n n C3 H32 RET sing 284 n n C4 C5 RET sing 285 n n C4 H41 RET sing 286 n n C4 H42 RET sing 287 n n C5 C6 RET doub 288 n n C5 C18 RET sing 289 n n C6 C7 RET sing 290 n n C7 C8 RET doub 291 e n C7 H7 RET sing 292 n n C8 C9 RET sing 293 n n C8 H8 RET sing 294 n n C9 C10 RET doub 295 e n C9 C19 RET sing 296 n n C10 C11 RET sing 297 n n C10 H10 RET sing 298 n n C11 C12 RET doub 299 e n C11 H11 RET sing 300 n n C12 C13 RET sing 301 n n C12 H12 RET sing 302 n n C13 C14 RET doub 303 e n C13 C20 RET sing 304 n n C14 C15 RET sing 305 n n C14 H14 RET sing 306 n n C15 O1 RET doub 307 n n C15 H15 RET sing 308 n n C16 H161 RET sing 309 n n C16 H162 RET sing 310 n n C16 H163 RET sing 311 n n C17 H171 RET sing 312 n n C17 H172 RET sing 313 n n C17 H173 RET sing 314 n n C18 H181 RET sing 315 n n C18 H182 RET sing 316 n n C18 H183 RET sing 317 n n C19 H191 RET sing 318 n n C19 H192 RET sing 319 n n C19 H193 RET sing 320 n n C20 H201 RET sing 321 n n C20 H202 RET sing 322 n n C20 H203 RET sing 323 n n # _atom_sites.entry_id 2M3G _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 RET A 1 301 210 RET LYR . E 2 RET B 1 301 210 RET LYR . F 2 RET C 1 301 210 RET LYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . E 2 16.391 10.323 -9.281 1 5.91 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . E 2 16.085 11.585 -10.09 1 6.74 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . E 2 15.309 12.578 -9.263 1 6.92 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . E 2 16.15 13.049 -8.106 1 6.54 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . E 2 16.584 11.873 -7.244 1 5.74 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . E 2 16.699 10.609 -7.756 1 5.43 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . E 2 17.107 9.483 -6.862 1 4.67 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . E 2 17.235 8.205 -7.268 1 4.31 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . E 2 17.627 7.129 -6.368 1 3.62 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . E 2 17.749 5.832 -6.812 1 3.3 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . E 2 18.126 4.766 -5.966 1 2.71 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . E 2 18.242 3.476 -6.426 1 2.44 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . E 2 18.617 2.401 -5.597 1 2.03 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . E 2 18.73 1.09 -6.094 1 1.84 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . E 2 19.094 0.031 -5.299 1 1.75 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . E 2 17.587 9.661 -9.95 1 6.02 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . E 2 15.19 9.394 -9.408 1 5.61 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . E 2 16.884 12.127 -5.771 1 5.35 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . E 2 17.907 7.446 -4.899 1 3.36 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . E 2 18.91 2.658 -4.121 1 2.06 ? C20 RET 301 B 1 HETATM 21 H H21 RET . . . E 2 17.01 12.043 -10.406 1 7.16 ? H21 RET 301 B 1 HETATM 22 H H22 RET . . . E 2 15.499 11.323 -10.959 1 6.91 ? H22 RET 301 B 1 HETATM 23 H H31 RET . . . E 2 15.045 13.425 -9.878 1 7.44 ? H31 RET 301 B 1 HETATM 24 H H32 RET . . . E 2 14.415 12.106 -8.884 1 6.95 ? H32 RET 301 B 1 HETATM 25 H H41 RET . . . E 2 17.022 13.554 -8.494 1 6.9 ? H41 RET 301 B 1 HETATM 26 H H42 RET . . . E 2 15.569 13.738 -7.512 1 6.58 ? H42 RET 301 B 1 HETATM 27 H H7 RET . . . E 2 17.308 9.707 -5.837 1 4.42 ? H7 RET 301 B 1 HETATM 28 H H8 RET . . . E 2 17.036 7.965 -8.289 1 4.6 ? H8 RET 301 B 1 HETATM 29 H H10 RET . . . E 2 17.549 5.623 -7.843 1 3.58 ? H10 RET 301 B 1 HETATM 30 H H11 RET . . . E 2 18.327 4.969 -4.936 1 2.58 ? H11 RET 301 B 1 HETATM 31 H H12 RET . . . E 2 18.041 3.28 -7.458 1 2.68 ? H12 RET 301 B 1 HETATM 32 H H14 RET . . . E 2 18.524 0.911 -7.128 1 1.99 ? H14 RET 301 B 1 HETATM 33 H H15 RET . . . E 2 19.299 0.205 -4.263 1 1.94 ? H15 RET 301 B 1 HETATM 34 H H161 RET . . . E 2 18.494 9.962 -9.446 1 6.12 ? H161 RET 301 B 1 HETATM 35 H H162 RET . . . E 2 17.633 9.965 -10.985 1 5.92 ? H162 RET 301 B 1 HETATM 36 H H163 RET . . . E 2 17.483 8.587 -9.895 1 6.36 ? H163 RET 301 B 1 HETATM 37 H H171 RET . . . E 2 14.716 9.547 -10.366 1 5.41 ? H171 RET 301 B 1 HETATM 38 H H172 RET . . . E 2 14.485 9.606 -8.618 1 5.48 ? H172 RET 301 B 1 HETATM 39 H H173 RET . . . E 2 15.52 8.368 -9.329 1 6.02 ? H173 RET 301 B 1 HETATM 40 H H181 RET . . . E 2 16.975 13.189 -5.601 1 5.43 ? H181 RET 301 B 1 HETATM 41 H H182 RET . . . E 2 17.807 11.637 -5.501 1 5.48 ? H182 RET 301 B 1 HETATM 42 H H183 RET . . . E 2 16.078 11.734 -5.168 1 5.15 ? H183 RET 301 B 1 HETATM 43 H H191 RET . . . E 2 18.151 8.493 -4.794 1 3.66 ? H191 RET 301 B 1 HETATM 44 H H192 RET . . . E 2 18.738 6.848 -4.555 1 3.08 ? H192 RET 301 B 1 HETATM 45 H H193 RET . . . E 2 17.032 7.22 -4.309 1 3.62 ? H193 RET 301 B 1 HETATM 46 H H201 RET . . . E 2 18.453 3.587 -3.815 1 2.44 ? H201 RET 301 B 1 HETATM 47 H H202 RET . . . E 2 19.979 2.715 -3.971 1 2.5 ? H202 RET 301 B 1 HETATM 48 H H203 RET . . . E 2 18.508 1.849 -3.528 1 2.02 ? H203 RET 301 B 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 340 _model_server_stats.query_time_ms 3074 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 48 #