data_2M5P # _model_server_result.job_id B8ngndIAyF3VKmLryCBiEA _model_server_result.datetime_utc '2025-02-26 12:08:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2m5p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":103}' # _entry.id 2M5P # _exptl.entry_id 2M5P _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 256.424 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2M5P _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2M5P _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 1 X HIS 1 1_555 A N AIB 2 X AIB 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C AIB 2 X AIB 2 1_555 A N GLN 3 X GLN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale3 A NZ LYS 13 X LYS 13 1_555 B CD GGL . X GGL 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale4 A C ASP 15 X ASP 15 1_555 A N AIB 16 X AIB 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C AIB 16 X AIB 16 1_555 A N ARG 17 X ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 A C THR 29 X THR 29 1_555 A N NH2 30 X NH2 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.22 ? covale ? covale7 B N GGL . X GGL 101 1_555 C CD GGL . X GGL 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale8 C N GGL . X GGL 102 1_555 D C1 PLM . X PLM 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2M5P _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GGL X 1 101 13 GGL LYX . C 2 GGL X 1 102 13 GGL LYX . D 3 PLM X 1 103 13 PLM LYX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . D 3 26.193 -22.999 -2.742 1 0 ? C1 PLM 103 X 1 HETATM 2 O O2 PLM . . . D 3 25.416 -22.89 -3.691 1 0 ? O2 PLM 103 X 1 HETATM 3 C C2 PLM . . . D 3 25.723 -23.641 -1.438 1 0 ? C2 PLM 103 X 1 HETATM 4 C C3 PLM . . . D 3 24.57 -22.824 -0.835 1 0 ? C3 PLM 103 X 1 HETATM 5 C C4 PLM . . . D 3 23.551 -23.755 -0.161 1 0 ? C4 PLM 103 X 1 HETATM 6 C C5 PLM . . . D 3 22.519 -24.213 -1.195 1 0 ? C5 PLM 103 X 1 HETATM 7 C C6 PLM . . . D 3 21.434 -23.141 -1.357 1 0 ? C6 PLM 103 X 1 HETATM 8 C C7 PLM . . . D 3 20.212 -23.522 -0.518 1 0 ? C7 PLM 103 X 1 HETATM 9 C C8 PLM . . . D 3 19.157 -22.411 -0.605 1 0 ? C8 PLM 103 X 1 HETATM 10 C C9 PLM . . . D 3 19.677 -21.131 0.065 1 0 ? C9 PLM 103 X 1 HETATM 11 C CA PLM . . . D 3 18.548 -20.479 0.87 1 0 ? CA PLM 103 X 1 HETATM 12 C CB PLM . . . D 3 19.072 -19.206 1.545 1 0 ? CB PLM 103 X 1 HETATM 13 C CC PLM . . . D 3 18.101 -18.764 2.646 1 0 ? CC PLM 103 X 1 HETATM 14 C CD PLM . . . D 3 18.726 -17.626 3.46 1 0 ? CD PLM 103 X 1 HETATM 15 C CE PLM . . . D 3 18.952 -18.097 4.9 1 0 ? CE PLM 103 X 1 HETATM 16 C CF PLM . . . D 3 19.731 -17.03 5.678 1 0 ? CF PLM 103 X 1 HETATM 17 C CG PLM . . . D 3 21.237 -17.252 5.503 1 0 ? CG PLM 103 X 1 HETATM 18 H H21 PLM . . . D 3 25.387 -24.647 -1.64 1 0 ? H21 PLM 103 X 1 HETATM 19 H H22 PLM . . . D 3 26.545 -23.674 -0.737 1 0 ? H22 PLM 103 X 1 HETATM 20 H H31 PLM . . . D 3 24.965 -22.137 -0.101 1 0 ? H31 PLM 103 X 1 HETATM 21 H H32 PLM . . . D 3 24.081 -22.267 -1.619 1 0 ? H32 PLM 103 X 1 HETATM 22 H H41 PLM . . . D 3 24.058 -24.619 0.249 1 0 ? H41 PLM 103 X 1 HETATM 23 H H42 PLM . . . D 3 23.054 -23.226 0.638 1 0 ? H42 PLM 103 X 1 HETATM 24 H H51 PLM . . . D 3 22.064 -25.134 -0.865 1 0 ? H51 PLM 103 X 1 HETATM 25 H H52 PLM . . . D 3 23.007 -24.374 -2.145 1 0 ? H52 PLM 103 X 1 HETATM 26 H H61 PLM . . . D 3 21.815 -22.185 -1.028 1 0 ? H61 PLM 103 X 1 HETATM 27 H H62 PLM . . . D 3 21.148 -23.074 -2.396 1 0 ? H62 PLM 103 X 1 HETATM 28 H H71 PLM . . . D 3 20.508 -23.665 0.511 1 0 ? H71 PLM 103 X 1 HETATM 29 H H72 PLM . . . D 3 19.79 -24.441 -0.898 1 0 ? H72 PLM 103 X 1 HETATM 30 H H81 PLM . . . D 3 18.939 -22.207 -1.642 1 0 ? H81 PLM 103 X 1 HETATM 31 H H82 PLM . . . D 3 18.255 -22.734 -0.107 1 0 ? H82 PLM 103 X 1 HETATM 32 H H91 PLM . . . D 3 20.019 -20.443 -0.693 1 0 ? H91 PLM 103 X 1 HETATM 33 H H92 PLM . . . D 3 20.496 -21.37 0.727 1 0 ? H92 PLM 103 X 1 HETATM 34 H HA1 PLM . . . D 3 18.2 -21.17 1.623 1 0 ? HA1 PLM 103 X 1 HETATM 35 H HA2 PLM . . . D 3 17.733 -20.227 0.208 1 0 ? HA2 PLM 103 X 1 HETATM 36 H HB1 PLM . . . D 3 20.041 -19.404 1.976 1 0 ? HB1 PLM 103 X 1 HETATM 37 H HB2 PLM . . . D 3 19.16 -18.421 0.808 1 0 ? HB2 PLM 103 X 1 HETATM 38 H HC1 PLM . . . D 3 17.891 -19.597 3.301 1 0 ? HC1 PLM 103 X 1 HETATM 39 H HC2 PLM . . . D 3 17.181 -18.42 2.196 1 0 ? HC2 PLM 103 X 1 HETATM 40 H HD1 PLM . . . D 3 19.671 -17.344 3.02 1 0 ? HD1 PLM 103 X 1 HETATM 41 H HD2 PLM . . . D 3 18.061 -16.776 3.46 1 0 ? HD2 PLM 103 X 1 HETATM 42 H HE1 PLM . . . D 3 19.512 -19.018 4.893 1 0 ? HE1 PLM 103 X 1 HETATM 43 H HE2 PLM . . . D 3 17.997 -18.261 5.377 1 0 ? HE2 PLM 103 X 1 HETATM 44 H HF1 PLM . . . D 3 19.468 -16.051 5.307 1 0 ? HF1 PLM 103 X 1 HETATM 45 H HF2 PLM . . . D 3 19.479 -17.095 6.726 1 0 ? HF2 PLM 103 X 1 HETATM 46 H HG1 PLM . . . D 3 21.501 -18.25 5.825 1 0 ? HG1 PLM 103 X 1 HETATM 47 H HG2 PLM . . . D 3 21.5 -17.127 4.463 1 0 ? HG2 PLM 103 X 1 HETATM 48 H HG3 PLM . . . D 3 21.778 -16.53 6.097 1 0 ? HG3 PLM 103 X 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 2863 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 48 #