data_2M9S
#
_model_server_result.job_id            e_2AF48JWUrHQeEXTetuOg 
_model_server_result.datetime_utc      '2025-08-01 03:00:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2m9s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":101}' 
#
_entry.id    2M9S 
#
_exptl.entry_id    2M9S 
_exptl.method      'SOLUTION NMR' 
#
_entity.details                     ? 
_entity.formula_weight              616.611 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl beta-D-glucopyranoside' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
_chem_comp.formula           'C34 H32 O11' 
_chem_comp.formula_weight    616.611 
_chem_comp.id                23Y 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl beta-D-glucopyranoside' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'POLYPHENOL EPSILON-VINIFERIN GLUCOSIDE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OF3 CF3 23Y sing 1 n n 
OF4 CF4 23Y sing 2 n n 
CF3 CF4 23Y sing 3 n n 
CF3 CF2 23Y sing 4 n n 
CF4 CF5 23Y sing 5 n n 
OF2 CF2 23Y sing 6 n n 
CF2 CF1 23Y sing 7 n n 
CF5 CF6 23Y sing 8 n n 
CF5 OF 23Y sing 9 n n 
CF6 OF6 23Y sing 10 n n 
CF1 OF 23Y sing 11 n n 
CF1 OF1 23Y sing 12 n n 
OF1 CG8 23Y sing 13 n n 
CG8 CG7 23Y doub 14 n y 
CG8 CG9 23Y sing 15 n y 
CG7 CG6 23Y sing 16 n y 
CE4 CE3 23Y doub 17 n y 
CE4 CE5 23Y sing 18 n y 
CE3 CE2 23Y sing 19 n y 
CD2 CE5 23Y sing 20 n n 
CD2 CD1 23Y doub 21 e n 
CG9 CG1 23Y doub 22 n y 
CE5 CE6 23Y doub 23 n y 
CG6 CD1 23Y sing 24 n n 
CG6 CG5 23Y doub 25 n y 
CE2 OE2 23Y sing 26 n n 
CE2 CE1 23Y doub 27 n y 
CG1 CG5 23Y sing 28 n y 
CG1 OG2 23Y sing 29 n n 
OC2 CC2 23Y sing 30 n n 
CG5 CG4 23Y sing 31 n n 
CE6 CE1 23Y sing 32 n y 
CC1 CC2 23Y doub 33 n y 
CC1 CC6 23Y sing 34 n y 
CC2 CC3 23Y sing 35 n y 
OG2 CG3 23Y sing 36 n n 
CG4 CC6 23Y sing 37 n n 
CG4 CG3 23Y sing 38 n n 
CC6 CC5 23Y doub 39 n y 
CG3 CB6 23Y sing 40 n n 
CC3 CC4 23Y doub 41 n y 
CC5 CC4 23Y sing 42 n y 
CC4 OC4 23Y sing 43 n n 
CB6 CB5 23Y doub 44 n y 
CB6 CB1 23Y sing 45 n y 
CB5 CB4 23Y sing 46 n y 
CB1 CB2 23Y doub 47 n y 
CB4 CB3 23Y doub 48 n y 
CB2 CB3 23Y sing 49 n y 
CB3 OB3 23Y sing 50 n n 
CG9 HCG9 23Y sing 51 n n 
CG3 HCG3 23Y sing 52 n n 
CG7 HCG7 23Y sing 53 n n 
CG4 HCG4 23Y sing 54 n n 
CB1 HCB1 23Y sing 55 n n 
CB2 HCB2 23Y sing 56 n n 
OB3 HOB3 23Y sing 57 n n 
CB4 HCB4 23Y sing 58 n n 
CB5 HCB5 23Y sing 59 n n 
CC1 HCC1 23Y sing 60 n n 
OC2 HOC2 23Y sing 61 n n 
CC3 HCC3 23Y sing 62 n n 
OC4 HOC4 23Y sing 63 n n 
CC5 HCC5 23Y sing 64 n n 
CD1 HCD1 23Y sing 65 n n 
CD2 HCD2 23Y sing 66 n n 
CE1 HCE1 23Y sing 67 n n 
OE2 HOE2 23Y sing 68 n n 
CE3 HCE3 23Y sing 69 n n 
CE4 HCE4 23Y sing 70 n n 
CE6 HCE6 23Y sing 71 n n 
CF5 HCF5 23Y sing 72 n n 
CF1 HCF1 23Y sing 73 n n 
CF2 HCF2 23Y sing 74 n n 
OF2 HOF2 23Y sing 75 n n 
CF3 HCF3 23Y sing 76 n n 
OF3 HOF3 23Y sing 77 n n 
CF4 HCF4 23Y sing 78 n n 
OF4 HOF4 23Y sing 79 n n 
CF6 HF61 23Y sing 80 n n 
CF6 HF62 23Y sing 81 n n 
OF6 HCF6 23Y sing 82 n n 
#
_atom_sites.entry_id                     2M9S 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 23Y A 1 101 1 23Y EVG . 
C 2 23Y A 1 102 2 23Y EVG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CG1 23Y . . . B 2 47.175 61.975 23.467 1 0 ? CG1 23Y 101 A 1 
HETATM 2 C CG9 23Y . . . B 2 47.571 62.69 24.611 1 0 ? CG9 23Y 101 A 1 
HETATM 3 C CG8 23Y . . . B 2 46.675 63.558 25.227 1 0 ? CG8 23Y 101 A 1 
HETATM 4 O OG2 23Y . . . B 2 47.933 61.078 22.764 1 0 ? OG2 23Y 101 A 1 
HETATM 5 C CG3 23Y . . . B 2 47.03 60.414 21.836 1 0 ? CG3 23Y 101 A 1 
HETATM 6 C CG5 23Y . . . B 2 45.872 62.176 22.92 1 0 ? CG5 23Y 101 A 1 
HETATM 7 C CG6 23Y . . . B 2 44.966 63.119 23.524 1 0 ? CG6 23Y 101 A 1 
HETATM 8 C CG7 23Y . . . B 2 45.403 63.77 24.689 1 0 ? CG7 23Y 101 A 1 
HETATM 9 C CG4 23Y . . . B 2 45.762 61.313 21.666 1 0 ? CG4 23Y 101 A 1 
HETATM 10 C CB1 23Y . . . B 2 48.705 60.831 19.939 1 0 ? CB1 23Y 101 A 1 
HETATM 11 C CB2 23Y . . . B 2 49.324 60.449 18.753 1 0 ? CB2 23Y 101 A 1 
HETATM 12 C CB3 23Y . . . B 2 48.959 59.264 18.13 1 0 ? CB3 23Y 101 A 1 
HETATM 13 O OB3 23Y . . . B 2 49.616 58.886 17.001 1 0 ? OB3 23Y 101 A 1 
HETATM 14 C CB4 23Y . . . B 2 47.96 58.462 18.669 1 0 ? CB4 23Y 101 A 1 
HETATM 15 C CB5 23Y . . . B 2 47.337 58.841 19.855 1 0 ? CB5 23Y 101 A 1 
HETATM 16 C CB6 23Y . . . B 2 47.71 60.026 20.506 1 0 ? CB6 23Y 101 A 1 
HETATM 17 C CC1 23Y . . . B 2 43.757 59.872 22.456 1 0 ? CC1 23Y 101 A 1 
HETATM 18 C CC2 23Y . . . B 2 42.592 59.163 22.186 1 0 ? CC2 23Y 101 A 1 
HETATM 19 O OC2 23Y . . . B 2 41.911 58.571 23.215 1 0 ? OC2 23Y 101 A 1 
HETATM 20 C CC3 23Y . . . B 2 42.13 59.056 20.876 1 0 ? CC3 23Y 101 A 1 
HETATM 21 C CC4 23Y . . . B 2 42.835 59.659 19.838 1 0 ? CC4 23Y 101 A 1 
HETATM 22 O OC4 23Y . . . B 2 42.426 59.513 18.543 1 0 ? OC4 23Y 101 A 1 
HETATM 23 C CC5 23Y . . . B 2 43.991 60.382 20.11 1 0 ? CC5 23Y 101 A 1 
HETATM 24 C CC6 23Y . . . B 2 44.462 60.501 21.421 1 0 ? CC6 23Y 101 A 1 
HETATM 25 C CD1 23Y . . . B 2 43.609 63.438 22.873 1 0 ? CD1 23Y 101 A 1 
HETATM 26 C CD2 23Y . . . B 2 42.65 64.283 23.303 1 0 ? CD2 23Y 101 A 1 
HETATM 27 C CE1 23Y . . . B 2 39.562 64.223 20.998 1 0 ? CE1 23Y 101 A 1 
HETATM 28 C CE2 23Y . . . B 2 38.756 65.171 21.62 1 0 ? CE2 23Y 101 A 1 
HETATM 29 O OE2 23Y . . . B 2 37.529 65.466 21.09 1 0 ? OE2 23Y 101 A 1 
HETATM 30 C CE3 23Y . . . B 2 39.2 65.816 22.769 1 0 ? CE3 23Y 101 A 1 
HETATM 31 C CE4 23Y . . . B 2 40.456 65.522 23.293 1 0 ? CE4 23Y 101 A 1 
HETATM 32 C CE5 23Y . . . B 2 41.287 64.578 22.67 1 0 ? CE5 23Y 101 A 1 
HETATM 33 C CE6 23Y . . . B 2 40.823 63.933 21.513 1 0 ? CE6 23Y 101 A 1 
HETATM 34 C CF5 23Y . . . B 2 44.99 63.344 29.22 1 0 ? CF5 23Y 101 A 1 
HETATM 35 O OF 23Y . . . B 2 45.407 63.769 27.893 1 0 ? OF 23Y 101 A 1 
HETATM 36 C CF1 23Y . . . B 2 46.845 63.834 27.645 1 0 ? CF1 23Y 101 A 1 
HETATM 37 O OF1 23Y . . . B 2 47.097 64.325 26.302 1 0 ? OF1 23Y 101 A 1 
HETATM 38 C CF2 23Y . . . B 2 47.505 64.809 28.658 1 0 ? CF2 23Y 101 A 1 
HETATM 39 O OF2 23Y . . . B 2 48.927 64.763 28.53 1 0 ? OF2 23Y 101 A 1 
HETATM 40 C CF3 23Y . . . B 2 47.091 64.494 30.121 1 0 ? CF3 23Y 101 A 1 
HETATM 41 O OF3 23Y . . . B 2 47.536 65.563 30.953 1 0 ? OF3 23Y 101 A 1 
HETATM 42 C CF4 23Y . . . B 2 45.555 64.333 30.28 1 0 ? CF4 23Y 101 A 1 
HETATM 43 O OF4 23Y . . . B 2 45.244 63.856 31.591 1 0 ? OF4 23Y 101 A 1 
HETATM 44 C CF6 23Y . . . B 2 43.454 63.27 29.207 1 0 ? CF6 23Y 101 A 1 
HETATM 45 O OF6 23Y . . . B 2 42.956 62.781 30.449 1 0 ? OF6 23Y 101 A 1 
HETATM 46 H HCG9 23Y . . . B 2 48.57 62.565 24.999 1 0 ? HCG9 23Y 101 A 1 
HETATM 47 H HCG3 23Y . . . B 2 46.731 59.475 22.346 1 0 ? HCG3 23Y 101 A 1 
HETATM 48 H HCG7 23Y . . . B 2 44.781 64.502 25.18 1 0 ? HCG7 23Y 101 A 1 
HETATM 49 H HCG4 23Y . . . B 2 45.926 62.006 20.818 1 0 ? HCG4 23Y 101 A 1 
HETATM 50 H HCB1 23Y . . . B 2 49.027 61.735 20.434 1 0 ? HCB1 23Y 101 A 1 
HETATM 51 H HCB2 23Y . . . B 2 50.122 61.042 18.334 1 0 ? HCB2 23Y 101 A 1 
HETATM 52 H HOB3 23Y . . . B 2 49.242 58.079 16.643 1 0 ? HOB3 23Y 101 A 1 
HETATM 53 H HCB4 23Y . . . B 2 47.679 57.542 18.179 1 0 ? HCB4 23Y 101 A 1 
HETATM 54 H HCB5 23Y . . . B 2 46.567 58.204 20.268 1 0 ? HCB5 23Y 101 A 1 
HETATM 55 H HCC1 23Y . . . B 2 44.102 59.951 23.477 1 0 ? HCC1 23Y 101 A 1 
HETATM 56 H HOC2 23Y . . . B 2 41.137 58.127 22.863 1 0 ? HOC2 23Y 101 A 1 
HETATM 57 H HCC3 23Y . . . B 2 41.237 58.491 20.656 1 0 ? HCC3 23Y 101 A 1 
HETATM 58 H HOC4 23Y . . . B 2 43.167 59.741 17.969 1 0 ? HOC4 23Y 101 A 1 
HETATM 59 H HCC5 23Y . . . B 2 44.542 60.827 19.296 1 0 ? HCC5 23Y 101 A 1 
HETATM 60 H HCD1 23Y . . . B 2 43.402 62.915 21.943 1 0 ? HCD1 23Y 101 A 1 
HETATM 61 H HCD2 23Y . . . B 2 42.859 64.834 24.219 1 0 ? HCD2 23Y 101 A 1 
HETATM 62 H HCE1 23Y . . . B 2 39.208 63.726 20.107 1 0 ? HCE1 23Y 101 A 1 
HETATM 63 H HOE2 23Y . . . B 2 37.097 66.118 21.646 1 0 ? HOE2 23Y 101 A 1 
HETATM 64 H HCE3 23Y . . . B 2 38.571 66.544 23.263 1 0 ? HCE3 23Y 101 A 1 
HETATM 65 H HCE4 23Y . . . B 2 40.775 66.029 24.193 1 0 ? HCE4 23Y 101 A 1 
HETATM 66 H HCE6 23Y . . . B 2 41.429 63.201 20.999 1 0 ? HCE6 23Y 101 A 1 
HETATM 67 H HCF5 23Y . . . B 2 45.383 62.328 29.423 1 0 ? HCF5 23Y 101 A 1 
HETATM 68 H HCF1 23Y . . . B 2 47.291 62.826 27.761 1 0 ? HCF1 23Y 101 A 1 
HETATM 69 H HCF2 23Y . . . B 2 47.166 65.834 28.41 1 0 ? HCF2 23Y 101 A 1 
HETATM 70 H HOF2 23Y . . . B 2 49.215 63.909 28.862 1 0 ? HOF2 23Y 101 A 1 
HETATM 71 H HCF3 23Y . . . B 2 47.585 63.554 30.438 1 0 ? HCF3 23Y 101 A 1 
HETATM 72 H HOF3 23Y . . . B 2 47.47 65.268 31.863 1 0 ? HOF3 23Y 101 A 1 
HETATM 73 H HCF4 23Y . . . B 2 45.08 65.322 30.126 1 0 ? HCF4 23Y 101 A 1 
HETATM 74 H HOF4 23Y . . . B 2 45.532 64.531 32.211 1 0 ? HOF4 23Y 101 A 1 
HETATM 75 H HF61 23Y . . . B 2 43.117 62.608 28.387 1 0 ? HF61 23Y 101 A 1 
HETATM 76 H HF62 23Y . . . B 2 43.02 64.264 28.991 1 0 ? HF62 23Y 101 A 1 
HETATM 77 H HCF6 23Y . . . B 2 43.446 63.255 31.134 1 0 ? HCF6 23Y 101 A 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           2521 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           77 
#