data_2M9S # _model_server_result.job_id wCGZDs8Cg7SdH7LrcLbJMA _model_server_result.datetime_utc '2025-08-01 03:00:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2m9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":102}' # _entry.id 2M9S # _exptl.entry_id 2M9S _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 616.611 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C34 H32 O11' _chem_comp.formula_weight 616.611 _chem_comp.id 23Y _chem_comp.mon_nstd_flag . _chem_comp.name '(2S,3S)-3-(3,5-dihydroxyphenyl)-2-(4-hydroxyphenyl)-4-[(E)-2-(4-hydroxyphenyl)ethenyl]-2,3-dihydro-1-benzofuran-6-yl beta-D-glucopyranoside' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'POLYPHENOL EPSILON-VINIFERIN GLUCOSIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OF3 CF3 23Y sing 1 n n OF4 CF4 23Y sing 2 n n CF3 CF4 23Y sing 3 n n CF3 CF2 23Y sing 4 n n CF4 CF5 23Y sing 5 n n OF2 CF2 23Y sing 6 n n CF2 CF1 23Y sing 7 n n CF5 CF6 23Y sing 8 n n CF5 OF 23Y sing 9 n n CF6 OF6 23Y sing 10 n n CF1 OF 23Y sing 11 n n CF1 OF1 23Y sing 12 n n OF1 CG8 23Y sing 13 n n CG8 CG7 23Y doub 14 n y CG8 CG9 23Y sing 15 n y CG7 CG6 23Y sing 16 n y CE4 CE3 23Y doub 17 n y CE4 CE5 23Y sing 18 n y CE3 CE2 23Y sing 19 n y CD2 CE5 23Y sing 20 n n CD2 CD1 23Y doub 21 e n CG9 CG1 23Y doub 22 n y CE5 CE6 23Y doub 23 n y CG6 CD1 23Y sing 24 n n CG6 CG5 23Y doub 25 n y CE2 OE2 23Y sing 26 n n CE2 CE1 23Y doub 27 n y CG1 CG5 23Y sing 28 n y CG1 OG2 23Y sing 29 n n OC2 CC2 23Y sing 30 n n CG5 CG4 23Y sing 31 n n CE6 CE1 23Y sing 32 n y CC1 CC2 23Y doub 33 n y CC1 CC6 23Y sing 34 n y CC2 CC3 23Y sing 35 n y OG2 CG3 23Y sing 36 n n CG4 CC6 23Y sing 37 n n CG4 CG3 23Y sing 38 n n CC6 CC5 23Y doub 39 n y CG3 CB6 23Y sing 40 n n CC3 CC4 23Y doub 41 n y CC5 CC4 23Y sing 42 n y CC4 OC4 23Y sing 43 n n CB6 CB5 23Y doub 44 n y CB6 CB1 23Y sing 45 n y CB5 CB4 23Y sing 46 n y CB1 CB2 23Y doub 47 n y CB4 CB3 23Y doub 48 n y CB2 CB3 23Y sing 49 n y CB3 OB3 23Y sing 50 n n CG9 HCG9 23Y sing 51 n n CG3 HCG3 23Y sing 52 n n CG7 HCG7 23Y sing 53 n n CG4 HCG4 23Y sing 54 n n CB1 HCB1 23Y sing 55 n n CB2 HCB2 23Y sing 56 n n OB3 HOB3 23Y sing 57 n n CB4 HCB4 23Y sing 58 n n CB5 HCB5 23Y sing 59 n n CC1 HCC1 23Y sing 60 n n OC2 HOC2 23Y sing 61 n n CC3 HCC3 23Y sing 62 n n OC4 HOC4 23Y sing 63 n n CC5 HCC5 23Y sing 64 n n CD1 HCD1 23Y sing 65 n n CD2 HCD2 23Y sing 66 n n CE1 HCE1 23Y sing 67 n n OE2 HOE2 23Y sing 68 n n CE3 HCE3 23Y sing 69 n n CE4 HCE4 23Y sing 70 n n CE6 HCE6 23Y sing 71 n n CF5 HCF5 23Y sing 72 n n CF1 HCF1 23Y sing 73 n n CF2 HCF2 23Y sing 74 n n OF2 HOF2 23Y sing 75 n n CF3 HCF3 23Y sing 76 n n OF3 HOF3 23Y sing 77 n n CF4 HCF4 23Y sing 78 n n OF4 HOF4 23Y sing 79 n n CF6 HF61 23Y sing 80 n n CF6 HF62 23Y sing 81 n n OF6 HCF6 23Y sing 82 n n # _atom_sites.entry_id 2M9S _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 23Y A 1 101 1 23Y EVG . C 2 23Y A 1 102 2 23Y EVG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CG1 23Y . . . C 2 70.35 48.812 3.708 1 0 ? CG1 23Y 102 A 1 HETATM 2 C CG9 23Y . . . C 2 71.338 47.832 3.885 1 0 ? CG9 23Y 102 A 1 HETATM 3 C CG8 23Y . . . C 2 71.024 46.483 3.762 1 0 ? CG8 23Y 102 A 1 HETATM 4 O OG2 23Y . . . C 2 70.527 50.165 3.818 1 0 ? OG2 23Y 102 A 1 HETATM 5 C CG3 23Y . . . C 2 69.293 50.79 3.37 1 0 ? CG3 23Y 102 A 1 HETATM 6 C CG5 23Y . . . C 2 69.012 48.424 3.413 1 0 ? CG5 23Y 102 A 1 HETATM 7 C CG6 23Y . . . C 2 68.665 47.027 3.313 1 0 ? CG6 23Y 102 A 1 HETATM 8 C CG7 23Y . . . C 2 69.705 46.092 3.475 1 0 ? CG7 23Y 102 A 1 HETATM 9 C CG4 23Y . . . C 2 68.167 49.7 3.36 1 0 ? CG4 23Y 102 A 1 HETATM 10 C CB1 23Y . . . C 2 68.342 53.153 3.531 1 0 ? CB1 23Y 102 A 1 HETATM 11 C CB2 23Y . . . C 2 68.025 54.308 4.244 1 0 ? CB2 23Y 102 A 1 HETATM 12 C CB3 23Y . . . C 2 68.307 54.386 5.604 1 0 ? CB3 23Y 102 A 1 HETATM 13 O OB3 23Y . . . C 2 67.995 55.525 6.296 1 0 ? OB3 23Y 102 A 1 HETATM 14 C CB4 23Y . . . C 2 68.906 53.312 6.257 1 0 ? CB4 23Y 102 A 1 HETATM 15 C CB5 23Y . . . C 2 69.221 52.154 5.547 1 0 ? CB5 23Y 102 A 1 HETATM 16 C CB6 23Y . . . C 2 68.945 52.065 4.176 1 0 ? CB6 23Y 102 A 1 HETATM 17 C CC1 23Y . . . C 2 65.871 50.401 2.501 1 0 ? CC1 23Y 102 A 1 HETATM 18 C CC2 23Y . . . C 2 64.921 50.565 1.496 1 0 ? CC2 23Y 102 A 1 HETATM 19 O OC2 23Y . . . C 2 63.677 51.052 1.796 1 0 ? OC2 23Y 102 A 1 HETATM 20 C CC3 23Y . . . C 2 65.233 50.225 0.184 1 0 ? CC3 23Y 102 A 1 HETATM 21 C CC4 23Y . . . C 2 66.489 49.716 -0.127 1 0 ? CC4 23Y 102 A 1 HETATM 22 O OC4 23Y . . . C 2 66.779 49.372 -1.42 1 0 ? OC4 23Y 102 A 1 HETATM 23 C CC5 23Y . . . C 2 67.442 49.551 0.874 1 0 ? CC5 23Y 102 A 1 HETATM 24 C CC6 23Y . . . C 2 67.14 49.884 2.204 1 0 ? CC6 23Y 102 A 1 HETATM 25 C CD1 23Y . . . C 2 67.207 46.599 3.071 1 0 ? CD1 23Y 102 A 1 HETATM 26 C CD2 23Y . . . C 2 66.702 45.357 2.917 1 0 ? CD2 23Y 102 A 1 HETATM 27 C CE1 23Y . . . C 2 62.892 45.437 2.32 1 0 ? CE1 23Y 102 A 1 HETATM 28 C CE2 23Y . . . C 2 62.62 44.078 2.198 1 0 ? CE2 23Y 102 A 1 HETATM 29 O OE2 23Y . . . C 2 61.338 43.666 1.951 1 0 ? OE2 23Y 102 A 1 HETATM 30 C CE3 23Y . . . C 2 63.647 43.149 2.32 1 0 ? CE3 23Y 102 A 1 HETATM 31 C CE4 23Y . . . C 2 64.951 43.578 2.554 1 0 ? CE4 23Y 102 A 1 HETATM 32 C CE5 23Y . . . C 2 65.246 44.946 2.663 1 0 ? CE5 23Y 102 A 1 HETATM 33 C CE6 23Y . . . C 2 64.196 45.872 2.539 1 0 ? CE6 23Y 102 A 1 HETATM 34 C CF5 23Y . . . C 2 71.127 42.175 5.008 1 0 ? CF5 23Y 102 A 1 HETATM 35 O OF 23Y . . . C 2 71.196 43.63 4.912 1 0 ? OF 23Y 102 A 1 HETATM 36 C CF1 23Y . . . C 2 72.084 44.178 3.891 1 0 ? CF1 23Y 102 A 1 HETATM 37 O OF1 23Y . . . C 2 72.108 45.627 3.97 1 0 ? OF1 23Y 102 A 1 HETATM 38 C CF2 23Y . . . C 2 73.534 43.672 4.123 1 0 ? CF2 23Y 102 A 1 HETATM 39 O OF2 23Y . . . C 2 74.361 44.052 3.023 1 0 ? OF2 23Y 102 A 1 HETATM 40 C CF3 23Y . . . C 2 73.577 42.134 4.279 1 0 ? CF3 23Y 102 A 1 HETATM 41 O OF3 23Y . . . C 2 74.875 41.73 4.701 1 0 ? OF3 23Y 102 A 1 HETATM 42 C CF4 23Y . . . C 2 72.549 41.61 5.309 1 0 ? CF4 23Y 102 A 1 HETATM 43 O OF4 23Y . . . C 2 72.572 40.184 5.266 1 0 ? OF4 23Y 102 A 1 HETATM 44 C CF6 23Y . . . C 2 70.074 41.85 6.081 1 0 ? CF6 23Y 102 A 1 HETATM 45 O OF6 23Y . . . C 2 69.799 40.45 6.128 1 0 ? OF6 23Y 102 A 1 HETATM 46 H HCG9 23Y . . . C 2 72.345 48.139 4.123 1 0 ? HCG9 23Y 102 A 1 HETATM 47 H HCG3 23Y . . . C 2 69.497 51.1 2.323 1 0 ? HCG3 23Y 102 A 1 HETATM 48 H HCG7 23Y . . . C 2 69.497 45.036 3.403 1 0 ? HCG7 23Y 102 A 1 HETATM 49 H HCG4 23Y . . . C 2 67.636 49.73 4.332 1 0 ? HCG4 23Y 102 A 1 HETATM 50 H HCB1 23Y . . . C 2 68.115 53.109 2.475 1 0 ? HCB1 23Y 102 A 1 HETATM 51 H HCB2 23Y . . . C 2 67.562 55.146 3.744 1 0 ? HCB2 23Y 102 A 1 HETATM 52 H HOB3 23Y . . . C 2 68.259 55.416 7.211 1 0 ? HOB3 23Y 102 A 1 HETATM 53 H HCB4 23Y . . . C 2 69.131 53.37 7.311 1 0 ? HCB4 23Y 102 A 1 HETATM 54 H HCB5 23Y . . . C 2 69.691 51.328 6.062 1 0 ? HCB5 23Y 102 A 1 HETATM 55 H HCC1 23Y . . . C 2 65.624 50.68 3.516 1 0 ? HCC1 23Y 102 A 1 HETATM 56 H HOC2 23Y . . . C 2 63.675 51.338 2.712 1 0 ? HOC2 23Y 102 A 1 HETATM 57 H HCC3 23Y . . . C 2 64.502 50.363 -0.598 1 0 ? HCC3 23Y 102 A 1 HETATM 58 H HOC4 23Y . . . C 2 67.68 49.045 -1.462 1 0 ? HOC4 23Y 102 A 1 HETATM 59 H HCC5 23Y . . . C 2 68.414 49.15 0.628 1 0 ? HCC5 23Y 102 A 1 HETATM 60 H HCD1 23Y . . . C 2 66.487 47.411 3.018 1 0 ? HCD1 23Y 102 A 1 HETATM 61 H HCD2 23Y . . . C 2 67.409 44.531 2.98 1 0 ? HCD2 23Y 102 A 1 HETATM 62 H HCE1 23Y . . . C 2 62.085 46.148 2.251 1 0 ? HCE1 23Y 102 A 1 HETATM 63 H HOE2 23Y . . . C 2 61.319 42.706 1.934 1 0 ? HOE2 23Y 102 A 1 HETATM 64 H HCE3 23Y . . . C 2 63.44 42.091 2.237 1 0 ? HCE3 23Y 102 A 1 HETATM 65 H HCE4 23Y . . . C 2 65.732 42.837 2.651 1 0 ? HCE4 23Y 102 A 1 HETATM 66 H HCE6 23Y . . . C 2 64.374 46.935 2.614 1 0 ? HCE6 23Y 102 A 1 HETATM 67 H HCF5 23Y . . . C 2 70.765 41.767 4.044 1 0 ? HCF5 23Y 102 A 1 HETATM 68 H HCF1 23Y . . . C 2 71.741 43.867 2.885 1 0 ? HCF1 23Y 102 A 1 HETATM 69 H HCF2 23Y . . . C 2 73.924 44.129 5.054 1 0 ? HCF2 23Y 102 A 1 HETATM 70 H HOF2 23Y . . . C 2 74.395 45.013 3.021 1 0 ? HOF2 23Y 102 A 1 HETATM 71 H HCF3 23Y . . . C 2 73.37 41.677 3.292 1 0 ? HCF3 23Y 102 A 1 HETATM 72 H HOF3 23Y . . . C 2 74.799 40.79 4.892 1 0 ? HOF3 23Y 102 A 1 HETATM 73 H HCF4 23Y . . . C 2 72.854 41.941 6.322 1 0 ? HCF4 23Y 102 A 1 HETATM 74 H HOF4 23Y . . . C 2 72.131 39.928 4.452 1 0 ? HOF4 23Y 102 A 1 HETATM 75 H HF61 23Y . . . C 2 70.409 42.215 7.071 1 0 ? HF61 23Y 102 A 1 HETATM 76 H HF62 23Y . . . C 2 69.139 42.398 5.856 1 0 ? HF62 23Y 102 A 1 HETATM 77 H HCF6 23Y . . . C 2 69.183 40.304 6.853 1 0 ? HCF6 23Y 102 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 3 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 2189 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 77 #