data_2MAS # _model_server_result.job_id J8hPzquNLU6uW74qMBgfkQ _model_server_result.datetime_utc '2025-02-05 06:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mas # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":316}' # _entry.id 2MAS # _exptl.entry_id 2MAS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2MAS _cell.length_a 120.63 _cell.length_b 159.76 _cell.length_c 206.38 _cell.Z_PDB 32 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MAS _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 9 A ASP 10 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 A OD1 ASP 14 A ASP 15 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A OD2 ASP 14 A ASP 15 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? metalc ? metalc4 A OD1 ASN 38 A ASN 39 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.349 ? metalc ? metalc5 A O THR 125 A THR 126 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc6 A OD2 ASP 241 A ASP 242 1_555 E CA CA . A CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc7 E CA CA . A CA 316 1_555 F O2' PIR . A PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.493 ? metalc ? metalc8 E CA CA . A CA 316 1_555 F O3' PIR . A PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? metalc ? metalc9 E CA CA . A CA 316 1_555 M O HOH . A HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? metalc ? metalc10 B OD1 ASP 9 B ASP 10 1_555 G CA CA . B CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc11 B OD1 ASP 14 B ASP 15 1_555 G CA CA . B CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc12 B OD2 ASP 14 B ASP 15 1_555 G CA CA . B CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc13 B O THR 125 B THR 126 1_555 G CA CA . B CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc14 B OD2 ASP 241 B ASP 242 1_555 G CA CA . B CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc15 G CA CA . B CA 316 1_555 H O2' PIR . B PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc16 G CA CA . B CA 316 1_555 H O3' PIR . B PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc17 G CA CA . B CA 316 1_555 N O HOH . B HOH 428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? metalc ? metalc18 C OD1 ASP 9 C ASP 10 1_555 I CA CA . C CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.477 ? metalc ? metalc19 C OD1 ASP 14 C ASP 15 1_555 I CA CA . C CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc20 C OD2 ASP 14 C ASP 15 1_555 I CA CA . C CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc21 C O THR 125 C THR 126 1_555 I CA CA . C CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc22 C OD2 ASP 241 C ASP 242 1_555 I CA CA . C CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.628 ? metalc ? metalc23 I CA CA . C CA 316 1_555 J O3' PIR . C PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc24 I CA CA . C CA 316 1_555 J O2' PIR . C PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.679 ? metalc ? metalc25 I CA CA . C CA 316 1_555 O O HOH . C HOH 451 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.399 ? metalc ? metalc26 D OD1 ASP 9 D ASP 10 1_555 K CA CA . D CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? metalc ? metalc27 D OD1 ASP 14 D ASP 15 1_555 K CA CA . D CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc28 D OD2 ASP 14 D ASP 15 1_555 K CA CA . D CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.664 ? metalc ? metalc29 D O THR 125 D THR 126 1_555 K CA CA . D CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc30 D OD2 ASP 241 D ASP 242 1_555 K CA CA . D CA 316 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc31 K CA CA . D CA 316 1_555 L O2' PIR . D PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc32 K CA CA . D CA 316 1_555 L O3' PIR . D PIR 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc33 K CA CA . D CA 316 1_555 P O HOH . D HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 2MAS _atom_sites.fract_transf_matrix[1][1] 0.00829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006259 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CA A 1 316 133 CA CA . F 3 PIR A 1 400 400 PIR PIR . G 2 CA B 1 316 6 CA CA . H 3 PIR B 1 400 400 PIR PIR . I 2 CA C 1 316 122 CA CA . J 3 PIR C 1 400 400 PIR PIR . K 2 CA D 1 316 139 CA CA . L 3 PIR D 1 400 400 PIR PIR . M 4 HOH A 1 401 1 HOH HOH . M 4 HOH A 2 402 2 HOH HOH . M 4 HOH A 3 403 3 HOH HOH . M 4 HOH A 4 404 4 HOH HOH . M 4 HOH A 5 405 5 HOH HOH . M 4 HOH A 6 406 28 HOH HOH . M 4 HOH A 7 407 29 HOH HOH . M 4 HOH A 8 408 30 HOH HOH . M 4 HOH A 9 409 31 HOH HOH . M 4 HOH A 10 410 32 HOH HOH . M 4 HOH A 11 411 33 HOH HOH . M 4 HOH A 12 412 34 HOH HOH . M 4 HOH A 13 413 35 HOH HOH . M 4 HOH A 14 414 36 HOH HOH . M 4 HOH A 15 415 37 HOH HOH . M 4 HOH A 16 416 38 HOH HOH . M 4 HOH A 17 417 41 HOH HOH . M 4 HOH A 18 418 42 HOH HOH . M 4 HOH A 19 419 43 HOH HOH . M 4 HOH A 20 420 118 HOH HOH . M 4 HOH A 21 421 168 HOH HOH . M 4 HOH A 22 422 170 HOH HOH . M 4 HOH A 23 423 171 HOH HOH . M 4 HOH A 24 424 172 HOH HOH . M 4 HOH A 25 425 177 HOH HOH . M 4 HOH A 26 426 184 HOH HOH . M 4 HOH A 27 427 187 HOH HOH . M 4 HOH A 28 428 188 HOH HOH . M 4 HOH A 29 429 193 HOH HOH . M 4 HOH A 30 430 197 HOH HOH . M 4 HOH A 31 431 200 HOH HOH . M 4 HOH A 32 432 206 HOH HOH . M 4 HOH A 33 433 207 HOH HOH . M 4 HOH A 34 434 209 HOH HOH . M 4 HOH A 35 435 210 HOH HOH . M 4 HOH A 36 436 137 HOH HOH . N 4 HOH B 1 401 7 HOH HOH . N 4 HOH B 2 402 8 HOH HOH . N 4 HOH B 3 403 9 HOH HOH . N 4 HOH B 4 404 10 HOH HOH . N 4 HOH B 5 405 11 HOH HOH . N 4 HOH B 6 406 12 HOH HOH . N 4 HOH B 7 407 13 HOH HOH . N 4 HOH B 8 408 14 HOH HOH . N 4 HOH B 9 409 15 HOH HOH . N 4 HOH B 10 410 16 HOH HOH . N 4 HOH B 11 411 17 HOH HOH . N 4 HOH B 12 412 18 HOH HOH . N 4 HOH B 13 413 19 HOH HOH . N 4 HOH B 14 414 20 HOH HOH . N 4 HOH B 15 415 21 HOH HOH . N 4 HOH B 16 416 22 HOH HOH . N 4 HOH B 17 417 23 HOH HOH . N 4 HOH B 18 418 25 HOH HOH . N 4 HOH B 19 419 26 HOH HOH . N 4 HOH B 20 420 27 HOH HOH . N 4 HOH B 21 421 157 HOH HOH . N 4 HOH B 22 422 165 HOH HOH . N 4 HOH B 23 423 166 HOH HOH . N 4 HOH B 24 424 179 HOH HOH . N 4 HOH B 25 425 182 HOH HOH . N 4 HOH B 26 426 192 HOH HOH . N 4 HOH B 27 427 195 HOH HOH . N 4 HOH B 28 428 199 HOH HOH . N 4 HOH B 29 429 201 HOH HOH . N 4 HOH B 30 430 208 HOH HOH . O 4 HOH C 1 401 44 HOH HOH . O 4 HOH C 2 402 45 HOH HOH . O 4 HOH C 3 403 46 HOH HOH . O 4 HOH C 4 404 47 HOH HOH . O 4 HOH C 5 405 48 HOH HOH . O 4 HOH C 6 406 72 HOH HOH . O 4 HOH C 7 407 73 HOH HOH . O 4 HOH C 8 408 75 HOH HOH . O 4 HOH C 9 409 76 HOH HOH . O 4 HOH C 10 410 77 HOH HOH . O 4 HOH C 11 411 78 HOH HOH . O 4 HOH C 12 412 79 HOH HOH . O 4 HOH C 13 413 80 HOH HOH . O 4 HOH C 14 414 81 HOH HOH . O 4 HOH C 15 415 82 HOH HOH . O 4 HOH C 16 416 83 HOH HOH . O 4 HOH C 17 417 84 HOH HOH . O 4 HOH C 18 418 85 HOH HOH . O 4 HOH C 19 419 86 HOH HOH . O 4 HOH C 20 420 87 HOH HOH . O 4 HOH C 21 421 100 HOH HOH . O 4 HOH C 22 422 101 HOH HOH . O 4 HOH C 23 423 104 HOH HOH . O 4 HOH C 24 424 105 HOH HOH . O 4 HOH C 25 425 106 HOH HOH . O 4 HOH C 26 426 107 HOH HOH . O 4 HOH C 27 427 108 HOH HOH . O 4 HOH C 28 428 109 HOH HOH . O 4 HOH C 29 429 110 HOH HOH . O 4 HOH C 30 430 111 HOH HOH . O 4 HOH C 31 431 112 HOH HOH . O 4 HOH C 32 432 114 HOH HOH . O 4 HOH C 33 433 115 HOH HOH . O 4 HOH C 34 434 117 HOH HOH . O 4 HOH C 35 435 119 HOH HOH . O 4 HOH C 36 436 120 HOH HOH . O 4 HOH C 37 437 121 HOH HOH . O 4 HOH C 38 438 123 HOH HOH . O 4 HOH C 39 439 125 HOH HOH . O 4 HOH C 40 440 126 HOH HOH . O 4 HOH C 41 441 135 HOH HOH . O 4 HOH C 42 442 141 HOH HOH . O 4 HOH C 43 443 148 HOH HOH . O 4 HOH C 44 444 149 HOH HOH . O 4 HOH C 45 445 152 HOH HOH . O 4 HOH C 46 446 153 HOH HOH . O 4 HOH C 47 447 175 HOH HOH . O 4 HOH C 48 448 180 HOH HOH . O 4 HOH C 49 449 181 HOH HOH . O 4 HOH C 50 450 186 HOH HOH . O 4 HOH C 51 451 130 HOH HOH . P 4 HOH D 1 401 49 HOH HOH . P 4 HOH D 2 402 50 HOH HOH . P 4 HOH D 3 403 51 HOH HOH . P 4 HOH D 4 404 52 HOH HOH . P 4 HOH D 5 405 53 HOH HOH . P 4 HOH D 6 406 54 HOH HOH . P 4 HOH D 7 407 55 HOH HOH . P 4 HOH D 8 408 56 HOH HOH . P 4 HOH D 9 409 57 HOH HOH . P 4 HOH D 10 410 59 HOH HOH . P 4 HOH D 11 411 60 HOH HOH . P 4 HOH D 12 412 61 HOH HOH . P 4 HOH D 13 413 63 HOH HOH . P 4 HOH D 14 414 64 HOH HOH . P 4 HOH D 15 415 65 HOH HOH . P 4 HOH D 16 416 66 HOH HOH . P 4 HOH D 17 417 67 HOH HOH . P 4 HOH D 18 418 69 HOH HOH . P 4 HOH D 19 419 70 HOH HOH . P 4 HOH D 20 420 71 HOH HOH . P 4 HOH D 21 421 127 HOH HOH . P 4 HOH D 22 422 128 HOH HOH . P 4 HOH D 23 423 131 HOH HOH . P 4 HOH D 24 424 132 HOH HOH . P 4 HOH D 25 425 140 HOH HOH . P 4 HOH D 26 426 142 HOH HOH . P 4 HOH D 27 427 143 HOH HOH . P 4 HOH D 28 428 150 HOH HOH . P 4 HOH D 29 429 151 HOH HOH . P 4 HOH D 30 430 155 HOH HOH . P 4 HOH D 31 431 158 HOH HOH . P 4 HOH D 32 432 160 HOH HOH . P 4 HOH D 33 433 161 HOH HOH . P 4 HOH D 34 434 164 HOH HOH . P 4 HOH D 35 435 173 HOH HOH . P 4 HOH D 36 436 174 HOH HOH . P 4 HOH D 37 437 178 HOH HOH . P 4 HOH D 38 438 190 HOH HOH . P 4 HOH D 39 439 194 HOH HOH . P 4 HOH D 40 440 196 HOH HOH . P 4 HOH D 41 441 138 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 2 _atom_site.Cartn_x 102.976 _atom_site.Cartn_y 4.331 _atom_site.Cartn_z 43.261 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 316 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 263 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #