data_2MB5 # _model_server_result.job_id iP6-wwWix3S3ZKs3v3VIvw _model_server_result.datetime_utc '2024-10-10 17:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mb5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":209}' # _entry.id 2MB5 # _exptl.entry_id 2MB5 _exptl.method 'NEUTRON DIFFRACTION' # _entity.details ? _entity.formula_weight 22.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'AMMONIUM CATION WITH D' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.78 _cell.angle_gamma 90 _cell.entry_id 2MB5 _cell.length_a 64.61 _cell.length_b 30.95 _cell.length_c 34.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MB5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 H FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc2 H FE HEM . A HEM 154 1_555 I C CMO . A CMO 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.117 ? metalc ? metalc3 H FE HEM . A HEM 154 1_555 I C CMO . A CMO 155 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'N 1' _chem_comp.formula_weight 22.063 _chem_comp.id ND4 _chem_comp.mon_nstd_flag . _chem_comp.name 'AMMONIUM CATION WITH D' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N D1 ND4 sing 307 n n N D2 ND4 sing 308 n n N D3 ND4 sing 309 n n N D4 ND4 sing 310 n n # _atom_sites.entry_id 2MB5 _atom_sites.fract_transf_matrix[1][1] 0.015477 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004374 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02981 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 174 174 SO4 SO4 . C 3 ND4 A 1 178 178 ND4 ND4 . D 3 ND4 A 1 209 209 ND4 ND4 . E 3 ND4 A 1 218 218 ND4 ND4 . F 3 ND4 A 1 248 248 ND4 ND4 . G 3 ND4 A 1 283 283 ND4 ND4 . H 4 HEM A 1 154 154 HEM HEM . I 5 CMO A 1 155 154 CMO HEM . J 6 DOD A 1 157 157 DOD DOD . J 6 DOD A 2 159 159 DOD DOD . J 6 DOD A 3 161 161 DOD DOD . J 6 DOD A 4 162 162 DOD DOD . J 6 DOD A 5 163 163 DOD DOD . J 6 DOD A 6 164 164 DOD DOD . J 6 DOD A 7 167 167 DOD DOD . J 6 DOD A 8 168 168 DOD DOD . J 6 DOD A 9 171 171 DOD DOD . J 6 DOD A 10 172 172 DOD DOD . J 6 DOD A 11 173 173 DOD DOD . J 6 DOD A 12 175 175 DOD DOD . J 6 DOD A 13 176 176 DOD DOD . J 6 DOD A 14 177 177 DOD DOD . J 6 DOD A 15 180 180 DOD DOD . J 6 DOD A 16 181 181 DOD DOD . J 6 DOD A 17 182 182 DOD DOD . J 6 DOD A 18 183 183 DOD DOD . J 6 DOD A 19 184 184 DOD DOD . J 6 DOD A 20 186 186 DOD DOD . J 6 DOD A 21 188 188 DOD DOD . J 6 DOD A 22 189 189 DOD DOD . J 6 DOD A 23 190 190 DOD DOD . J 6 DOD A 24 191 191 DOD DOD . J 6 DOD A 25 192 192 DOD DOD . J 6 DOD A 26 193 193 DOD DOD . J 6 DOD A 27 195 195 DOD DOD . J 6 DOD A 28 196 196 DOD DOD . J 6 DOD A 29 197 197 DOD DOD . J 6 DOD A 30 198 198 DOD DOD . J 6 DOD A 31 199 199 DOD DOD . J 6 DOD A 32 203 203 DOD DOD . J 6 DOD A 33 205 205 DOD DOD . J 6 DOD A 34 207 207 DOD DOD . J 6 DOD A 35 208 208 DOD DOD . J 6 DOD A 36 210 210 DOD DOD . J 6 DOD A 37 211 211 DOD DOD . J 6 DOD A 38 213 213 DOD DOD . J 6 DOD A 39 214 214 DOD DOD . J 6 DOD A 40 215 215 DOD DOD . J 6 DOD A 41 216 216 DOD DOD . J 6 DOD A 42 220 220 DOD DOD . J 6 DOD A 43 221 221 DOD DOD . J 6 DOD A 44 223 223 DOD DOD . J 6 DOD A 45 225 225 DOD DOD . J 6 DOD A 46 226 226 DOD DOD . J 6 DOD A 47 227 227 DOD DOD . J 6 DOD A 48 229 229 DOD DOD . J 6 DOD A 49 231 231 DOD DOD . J 6 DOD A 50 232 232 DOD DOD . J 6 DOD A 51 233 233 DOD DOD . J 6 DOD A 52 234 234 DOD DOD . J 6 DOD A 53 235 235 DOD DOD . J 6 DOD A 54 236 236 DOD DOD . J 6 DOD A 55 237 237 DOD DOD . J 6 DOD A 56 238 238 DOD DOD . J 6 DOD A 57 239 239 DOD DOD . J 6 DOD A 58 240 240 DOD DOD . J 6 DOD A 59 241 241 DOD DOD . J 6 DOD A 60 242 242 DOD DOD . J 6 DOD A 61 246 246 DOD DOD . J 6 DOD A 62 247 247 DOD DOD . J 6 DOD A 63 250 250 DOD DOD . J 6 DOD A 64 251 251 DOD DOD . J 6 DOD A 65 252 252 DOD DOD . J 6 DOD A 66 253 253 DOD DOD . J 6 DOD A 67 254 254 DOD DOD . J 6 DOD A 68 255 255 DOD DOD . J 6 DOD A 69 256 256 DOD DOD . J 6 DOD A 70 257 257 DOD DOD . J 6 DOD A 71 260 260 DOD DOD . J 6 DOD A 72 261 261 DOD DOD . J 6 DOD A 73 262 262 DOD DOD . J 6 DOD A 74 263 263 DOD DOD . J 6 DOD A 75 264 264 DOD DOD . J 6 DOD A 76 268 268 DOD DOD . J 6 DOD A 77 270 270 DOD DOD . J 6 DOD A 78 271 271 DOD DOD . J 6 DOD A 79 274 274 DOD DOD . J 6 DOD A 80 276 276 DOD DOD . J 6 DOD A 81 280 280 DOD DOD . J 6 DOD A 82 282 282 DOD DOD . J 6 DOD A 83 284 284 DOD DOD . J 6 DOD A 84 285 285 DOD DOD . J 6 DOD A 85 286 286 DOD DOD . J 6 DOD A 86 287 287 DOD DOD . J 6 DOD A 87 288 288 DOD DOD . J 6 DOD A 88 289 289 DOD DOD . J 6 DOD A 89 290 290 DOD DOD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ND4 . . . D 3 28.885 27.979 11.881 0.64 24.46 ? N ND4 209 A 1 HETATM 2 D D1 ND4 . . . D 3 29.417 27.287 12.374 0.64 24.48 ? D1 ND4 209 A 1 HETATM 3 D D2 ND4 . . . D 3 27.931 27.934 12.162 0.64 24.53 ? D2 ND4 209 A 1 HETATM 4 D D3 ND4 . . . D 3 29.252 28.884 12.089 0.64 24.64 ? D3 ND4 209 A 1 HETATM 5 D D4 ND4 . . . D 3 28.956 27.828 10.898 0.64 24.72 ? D4 ND4 209 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 5 #