data_2MCM # _model_server_result.job_id l3IjEWYGjSDTVMTZUqoO6Q _model_server_result.datetime_utc '2024-11-07 17:10:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mcm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":115}' # _entry.id 2MCM # _exptl.entry_id 2MCM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.59 _cell.angle_gamma 90 _cell.entry_id 2MCM _cell.length_a 36.29 _cell.length_b 35.58 _cell.length_c 38.04 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MCM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 36 A CYS 36 1_555 A SG CYS 46 A CYS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? disulf ? disulf2 A SG CYS 88 A CYS 88 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc1 A OE1 GLU 40 A GLU 40 1_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.53 ? metalc ? metalc2 A OE2 GLU 40 A GLU 40 1_555 B CA CA . A CA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? metalc ? metalc3 B CA CA . A CA 163 1_555 F O HOH . A HOH 197 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.274 ? metalc ? metalc4 B CA CA . A CA 163 1_555 F O HOH . A HOH 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? metalc ? metalc5 B CA CA . A CA 163 1_555 F O HOH . A HOH 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.322 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 213 n n C1 H1C1 MRD sing 214 n n C1 H1C2 MRD sing 215 n n C1 H1C3 MRD sing 216 n n C2 O2 MRD sing 217 n n C2 CM MRD sing 218 n n C2 C3 MRD sing 219 n n O2 H2 MRD sing 220 n n CM HMC1 MRD sing 221 n n CM HMC2 MRD sing 222 n n CM HMC3 MRD sing 223 n n C3 C4 MRD sing 224 n n C3 H3C1 MRD sing 225 n n C3 H3C2 MRD sing 226 n n C4 O4 MRD sing 227 n n C4 C5 MRD sing 228 n n C4 H4 MRD sing 229 n n O4 HA MRD sing 230 n n C5 H5C1 MRD sing 231 n n C5 H5C2 MRD sing 232 n n C5 H5C3 MRD sing 233 n n # _atom_sites.entry_id 2MCM _atom_sites.fract_transf_matrix[1][1] 0.027556 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028106 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026661 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 163 163 CA CA . C 3 MRD A 1 113 113 MRD MPD . D 3 MRD A 1 115 115 MRD MPD . E 4 MPD A 1 114 114 MPD MPD . F 5 HOH A 1 116 116 HOH HOH . F 5 HOH A 2 117 117 HOH HOH . F 5 HOH A 3 118 118 HOH HOH . F 5 HOH A 4 119 119 HOH HOH . F 5 HOH A 5 120 120 HOH HOH . F 5 HOH A 6 121 121 HOH HOH . F 5 HOH A 7 122 122 HOH HOH . F 5 HOH A 8 123 123 HOH HOH . F 5 HOH A 9 124 124 HOH HOH . F 5 HOH A 10 125 125 HOH HOH . F 5 HOH A 11 126 126 HOH HOH . F 5 HOH A 12 127 127 HOH HOH . F 5 HOH A 13 128 128 HOH HOH . F 5 HOH A 14 129 129 HOH HOH . F 5 HOH A 15 130 130 HOH HOH . F 5 HOH A 16 131 131 HOH HOH . F 5 HOH A 17 132 132 HOH HOH . F 5 HOH A 18 133 133 HOH HOH . F 5 HOH A 19 134 134 HOH HOH . F 5 HOH A 20 135 135 HOH HOH . F 5 HOH A 21 136 136 HOH HOH . F 5 HOH A 22 137 137 HOH HOH . F 5 HOH A 23 138 138 HOH HOH . F 5 HOH A 24 139 139 HOH HOH . F 5 HOH A 25 140 140 HOH HOH . F 5 HOH A 26 141 141 HOH HOH . F 5 HOH A 27 142 142 HOH HOH . F 5 HOH A 28 143 143 HOH HOH . F 5 HOH A 29 144 144 HOH HOH . F 5 HOH A 30 145 145 HOH HOH . F 5 HOH A 31 146 146 HOH HOH . F 5 HOH A 32 147 147 HOH HOH . F 5 HOH A 33 148 148 HOH HOH . F 5 HOH A 34 149 149 HOH HOH . F 5 HOH A 35 150 150 HOH HOH . F 5 HOH A 36 151 151 HOH HOH . F 5 HOH A 37 152 152 HOH HOH . F 5 HOH A 38 153 153 HOH HOH . F 5 HOH A 39 154 154 HOH HOH . F 5 HOH A 40 155 155 HOH HOH . F 5 HOH A 41 156 156 HOH HOH . F 5 HOH A 42 157 157 HOH HOH . F 5 HOH A 43 158 158 HOH HOH . F 5 HOH A 44 159 159 HOH HOH . F 5 HOH A 45 160 160 HOH HOH . F 5 HOH A 46 161 161 HOH HOH . F 5 HOH A 47 162 162 HOH HOH . F 5 HOH A 48 164 164 HOH HOH . F 5 HOH A 49 165 165 HOH HOH . F 5 HOH A 50 166 166 HOH HOH . F 5 HOH A 51 167 167 HOH HOH . F 5 HOH A 52 168 168 HOH HOH . F 5 HOH A 53 169 169 HOH HOH . F 5 HOH A 54 170 170 HOH HOH . F 5 HOH A 55 171 171 HOH HOH . F 5 HOH A 56 172 172 HOH HOH . F 5 HOH A 57 173 173 HOH HOH . F 5 HOH A 58 174 174 HOH HOH . F 5 HOH A 59 175 175 HOH HOH . F 5 HOH A 60 176 176 HOH HOH . F 5 HOH A 61 177 177 HOH HOH . F 5 HOH A 62 178 178 HOH HOH . F 5 HOH A 63 179 179 HOH HOH . F 5 HOH A 64 180 180 HOH HOH . F 5 HOH A 65 181 181 HOH HOH . F 5 HOH A 66 182 182 HOH HOH . F 5 HOH A 67 183 183 HOH HOH . F 5 HOH A 68 184 184 HOH HOH . F 5 HOH A 69 185 185 HOH HOH . F 5 HOH A 70 186 186 HOH HOH . F 5 HOH A 71 187 187 HOH HOH . F 5 HOH A 72 188 188 HOH HOH . F 5 HOH A 73 189 189 HOH HOH . F 5 HOH A 74 190 190 HOH HOH . F 5 HOH A 75 191 191 HOH HOH . F 5 HOH A 76 192 192 HOH HOH . F 5 HOH A 77 193 193 HOH HOH . F 5 HOH A 78 194 194 HOH HOH . F 5 HOH A 79 195 195 HOH HOH . F 5 HOH A 80 196 196 HOH HOH . F 5 HOH A 81 197 197 HOH HOH . F 5 HOH A 82 198 198 HOH HOH . F 5 HOH A 83 199 199 HOH HOH . F 5 HOH A 84 200 200 HOH HOH . F 5 HOH A 85 201 201 HOH HOH . F 5 HOH A 86 202 202 HOH HOH . F 5 HOH A 87 203 203 HOH HOH . F 5 HOH A 88 204 204 HOH HOH . F 5 HOH A 89 205 205 HOH HOH . F 5 HOH A 90 206 206 HOH HOH . F 5 HOH A 91 207 207 HOH HOH . F 5 HOH A 92 208 208 HOH HOH . F 5 HOH A 93 209 209 HOH HOH . F 5 HOH A 94 210 210 HOH HOH . F 5 HOH A 95 211 211 HOH HOH . F 5 HOH A 96 212 212 HOH HOH . F 5 HOH A 97 213 213 HOH HOH . F 5 HOH A 98 214 214 HOH HOH . F 5 HOH A 99 215 215 HOH HOH . F 5 HOH A 100 216 216 HOH HOH . F 5 HOH A 101 217 217 HOH HOH . F 5 HOH A 102 218 218 HOH HOH . F 5 HOH A 103 219 219 HOH HOH . F 5 HOH A 104 220 220 HOH HOH . F 5 HOH A 105 221 221 HOH HOH . F 5 HOH A 106 222 222 HOH HOH . F 5 HOH A 107 223 223 HOH HOH . F 5 HOH A 108 224 224 HOH HOH . F 5 HOH A 109 225 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . D 3 12.454 12.624 19.441 1 22.77 ? C1 MRD 115 A 1 HETATM 2 C C2 MRD . . . D 3 11.917 13.58 18.499 1 23.49 ? C2 MRD 115 A 1 HETATM 3 O O2 MRD . . . D 3 11.345 12.627 17.633 1 17.09 ? O2 MRD 115 A 1 HETATM 4 C CM MRD . . . D 3 13.019 14.5 17.922 1 21.92 ? CM MRD 115 A 1 HETATM 5 C C3 MRD . . . D 3 10.907 14.504 19.062 1 25.41 ? C3 MRD 115 A 1 HETATM 6 C C4 MRD . . . D 3 9.811 13.914 19.921 1 27.64 ? C4 MRD 115 A 1 HETATM 7 O O4 MRD . . . D 3 8.928 13.086 19.111 1 29.68 ? O4 MRD 115 A 1 HETATM 8 C C5 MRD . . . D 3 8.956 15.097 20.405 1 28.61 ? C5 MRD 115 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 231 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #