data_2MGE # _model_server_result.job_id FY3-6wUQA0xEVYbhjCbF1g _model_server_result.datetime_utc '2024-11-13 02:50:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mge # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":154}' # _entry.id 2MGE # _exptl.entry_id 2MGE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2MGE _cell.length_a 91.2 _cell.length_b 91.2 _cell.length_c 45.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MGE _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 94 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 93 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id FE _struct_conn.ptnr2_label_comp_id HEM _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id HEM _struct_conn.ptnr2_auth_seq_id 154 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.237 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 116 n n CHA C4D HEM doub 117 n n CHA HHA HEM sing 118 n n CHB C4A HEM sing 119 n n CHB C1B HEM doub 120 n n CHB HHB HEM sing 121 n n CHC C4B HEM sing 122 n n CHC C1C HEM doub 123 n n CHC HHC HEM sing 124 n n CHD C4C HEM doub 125 n n CHD C1D HEM sing 126 n n CHD HHD HEM sing 127 n n C1A C2A HEM doub 128 n y C1A NA HEM sing 129 n y C2A C3A HEM sing 130 n y C2A CAA HEM sing 131 n n C3A C4A HEM doub 132 n y C3A CMA HEM sing 133 n n C4A NA HEM sing 134 n y CMA HMA HEM sing 135 n n CMA HMAA HEM sing 136 n n CMA HMAB HEM sing 137 n n CAA CBA HEM sing 138 n n CAA HAA HEM sing 139 n n CAA HAAA HEM sing 140 n n CBA CGA HEM sing 141 n n CBA HBA HEM sing 142 n n CBA HBAA HEM sing 143 n n CGA O1A HEM doub 144 n n CGA O2A HEM sing 145 n n C1B C2B HEM sing 146 n n C1B NB HEM sing 147 n n C2B C3B HEM doub 148 n n C2B CMB HEM sing 149 n n C3B C4B HEM sing 150 n n C3B CAB HEM sing 151 n n C4B NB HEM doub 152 n n CMB HMB HEM sing 153 n n CMB HMBA HEM sing 154 n n CMB HMBB HEM sing 155 n n CAB CBB HEM doub 156 n n CAB HAB HEM sing 157 n n CBB HBB HEM sing 158 n n CBB HBBA HEM sing 159 n n C1C C2C HEM sing 160 n y C1C NC HEM sing 161 n y C2C C3C HEM doub 162 n y C2C CMC HEM sing 163 n n C3C C4C HEM sing 164 n y C3C CAC HEM sing 165 n n C4C NC HEM sing 166 n y CMC HMC HEM sing 167 n n CMC HMCA HEM sing 168 n n CMC HMCB HEM sing 169 n n CAC CBC HEM doub 170 n n CAC HAC HEM sing 171 n n CBC HBC HEM sing 172 n n CBC HBCA HEM sing 173 n n C1D C2D HEM sing 174 n n C1D ND HEM doub 175 n n C2D C3D HEM doub 176 n n C2D CMD HEM sing 177 n n C3D C4D HEM sing 178 n n C3D CAD HEM sing 179 n n C4D ND HEM sing 180 n n CMD HMD HEM sing 181 n n CMD HMDA HEM sing 182 n n CMD HMDB HEM sing 183 n n CAD CBD HEM sing 184 n n CAD HAD HEM sing 185 n n CAD HADA HEM sing 186 n n CBD CGD HEM sing 187 n n CBD HBD HEM sing 188 n n CBD HBDA HEM sing 189 n n CGD O1D HEM doub 190 n n CGD O2D HEM sing 191 n n O2A H2A HEM sing 192 n n O2D H2D HEM sing 193 n n FE NA HEM sing 194 n n FE NB HEM sing 195 n n FE NC HEM sing 196 n n FE ND HEM sing 197 n n # _atom_sites.entry_id 2MGE _atom_sites.fract_transf_matrix[1][1] 0.010965 _atom_sites.fract_transf_matrix[1][2] 0.006331 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012661 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 3 HEM A 1 154 154 HEM HEM . D 4 HOH A 1 200 200 HOH HOH . D 4 HOH A 2 201 201 HOH HOH . D 4 HOH A 3 202 202 HOH HOH . D 4 HOH A 4 203 203 HOH HOH . D 4 HOH A 5 204 204 HOH HOH . D 4 HOH A 6 205 205 HOH HOH . D 4 HOH A 7 206 206 HOH HOH . D 4 HOH A 8 207 207 HOH HOH . D 4 HOH A 9 208 208 HOH HOH . D 4 HOH A 10 209 209 HOH HOH . D 4 HOH A 11 210 210 HOH HOH . D 4 HOH A 12 211 211 HOH HOH . D 4 HOH A 13 212 212 HOH HOH . D 4 HOH A 14 213 213 HOH HOH . D 4 HOH A 15 214 214 HOH HOH . D 4 HOH A 16 215 215 HOH HOH . D 4 HOH A 17 216 216 HOH HOH . D 4 HOH A 18 217 217 HOH HOH . D 4 HOH A 19 218 218 HOH HOH . D 4 HOH A 20 219 219 HOH HOH . D 4 HOH A 21 220 220 HOH HOH . D 4 HOH A 22 221 221 HOH HOH . D 4 HOH A 23 222 222 HOH HOH . D 4 HOH A 24 223 223 HOH HOH . D 4 HOH A 25 224 224 HOH HOH . D 4 HOH A 26 225 225 HOH HOH . D 4 HOH A 27 226 226 HOH HOH . D 4 HOH A 28 227 227 HOH HOH . D 4 HOH A 29 228 228 HOH HOH . D 4 HOH A 30 229 229 HOH HOH . D 4 HOH A 31 230 230 HOH HOH . D 4 HOH A 32 231 231 HOH HOH . D 4 HOH A 33 232 232 HOH HOH . D 4 HOH A 34 233 233 HOH HOH . D 4 HOH A 35 234 234 HOH HOH . D 4 HOH A 36 235 235 HOH HOH . D 4 HOH A 37 236 236 HOH HOH . D 4 HOH A 38 237 237 HOH HOH . D 4 HOH A 39 238 238 HOH HOH . D 4 HOH A 40 239 239 HOH HOH . D 4 HOH A 41 240 240 HOH HOH . D 4 HOH A 42 241 241 HOH HOH . D 4 HOH A 43 242 242 HOH HOH . D 4 HOH A 44 243 243 HOH HOH . D 4 HOH A 45 244 244 HOH HOH . D 4 HOH A 46 245 245 HOH HOH . D 4 HOH A 47 246 246 HOH HOH . D 4 HOH A 48 247 247 HOH HOH . D 4 HOH A 49 248 248 HOH HOH . D 4 HOH A 50 249 249 HOH HOH . D 4 HOH A 51 250 250 HOH HOH . D 4 HOH A 52 251 251 HOH HOH . D 4 HOH A 53 252 252 HOH HOH . D 4 HOH A 54 253 253 HOH HOH . D 4 HOH A 55 254 254 HOH HOH . D 4 HOH A 56 255 255 HOH HOH . D 4 HOH A 57 256 256 HOH HOH . D 4 HOH A 58 257 257 HOH HOH . D 4 HOH A 59 258 258 HOH HOH . D 4 HOH A 60 259 259 HOH HOH . D 4 HOH A 61 260 260 HOH HOH . D 4 HOH A 62 261 261 HOH HOH . D 4 HOH A 63 262 262 HOH HOH . D 4 HOH A 64 263 263 HOH HOH . D 4 HOH A 65 264 264 HOH HOH . D 4 HOH A 66 265 265 HOH HOH . D 4 HOH A 67 266 266 HOH HOH . D 4 HOH A 68 267 267 HOH HOH . D 4 HOH A 69 268 268 HOH HOH . D 4 HOH A 70 269 269 HOH HOH . D 4 HOH A 71 270 270 HOH HOH . D 4 HOH A 72 271 271 HOH HOH . D 4 HOH A 73 272 272 HOH HOH . D 4 HOH A 74 273 273 HOH HOH . D 4 HOH A 75 274 274 HOH HOH . D 4 HOH A 76 275 275 HOH HOH . D 4 HOH A 77 276 276 HOH HOH . D 4 HOH A 78 277 277 HOH HOH . D 4 HOH A 79 278 278 HOH HOH . D 4 HOH A 80 279 279 HOH HOH . D 4 HOH A 81 280 280 HOH HOH . D 4 HOH A 82 281 281 HOH HOH . D 4 HOH A 83 282 282 HOH HOH . D 4 HOH A 84 283 283 HOH HOH . D 4 HOH A 85 284 284 HOH HOH . D 4 HOH A 86 285 285 HOH HOH . D 4 HOH A 87 286 286 HOH HOH . D 4 HOH A 88 287 287 HOH HOH . D 4 HOH A 89 288 288 HOH HOH . D 4 HOH A 90 289 289 HOH HOH . D 4 HOH A 91 290 290 HOH HOH . D 4 HOH A 92 291 291 HOH HOH . D 4 HOH A 93 292 292 HOH HOH . D 4 HOH A 94 293 293 HOH HOH . D 4 HOH A 95 294 294 HOH HOH . D 4 HOH A 96 295 295 HOH HOH . D 4 HOH A 97 296 296 HOH HOH . D 4 HOH A 98 297 297 HOH HOH . D 4 HOH A 99 298 298 HOH HOH . D 4 HOH A 100 299 299 HOH HOH . D 4 HOH A 101 300 300 HOH HOH . D 4 HOH A 102 301 301 HOH HOH . D 4 HOH A 103 302 302 HOH HOH . D 4 HOH A 104 303 303 HOH HOH . D 4 HOH A 105 304 304 HOH HOH . D 4 HOH A 106 305 305 HOH HOH . D 4 HOH A 107 306 306 HOH HOH . D 4 HOH A 108 307 307 HOH HOH . D 4 HOH A 109 308 308 HOH HOH . D 4 HOH A 110 309 309 HOH HOH . D 4 HOH A 111 310 310 HOH HOH . D 4 HOH A 112 311 311 HOH HOH . D 4 HOH A 113 312 312 HOH HOH . D 4 HOH A 114 313 313 HOH HOH . D 4 HOH A 115 314 314 HOH HOH . D 4 HOH A 116 315 315 HOH HOH . D 4 HOH A 117 316 316 HOH HOH . D 4 HOH A 118 317 317 HOH HOH . D 4 HOH A 119 318 318 HOH HOH . D 4 HOH A 120 319 319 HOH HOH . D 4 HOH A 121 320 320 HOH HOH . D 4 HOH A 122 321 321 HOH HOH . D 4 HOH A 123 322 322 HOH HOH . D 4 HOH A 124 323 323 HOH HOH . D 4 HOH A 125 324 324 HOH HOH . D 4 HOH A 126 325 325 HOH HOH . D 4 HOH A 127 326 326 HOH HOH . D 4 HOH A 128 327 327 HOH HOH . D 4 HOH A 129 328 328 HOH HOH . D 4 HOH A 130 329 329 HOH HOH . D 4 HOH A 131 330 330 HOH HOH . D 4 HOH A 132 331 331 HOH HOH . D 4 HOH A 133 332 332 HOH HOH . D 4 HOH A 134 333 333 HOH HOH . D 4 HOH A 135 334 334 HOH HOH . D 4 HOH A 136 335 335 HOH HOH . D 4 HOH A 137 336 336 HOH HOH . D 4 HOH A 138 337 337 HOH HOH . D 4 HOH A 139 338 338 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 3 37.894 2.579 11.394 1 14.1 ? CHA HEM 154 A 1 HETATM 2 C CHB HEM . . . C 3 37.171 5.539 7.539 1 12 ? CHB HEM 154 A 1 HETATM 3 C CHC HEM . . . C 3 32.586 6.421 9.094 1 11.5 ? CHC HEM 154 A 1 HETATM 4 C CHD HEM . . . C 3 33.372 3.389 12.92 1 13.1 ? CHD HEM 154 A 1 HETATM 5 C C1A HEM . . . C 3 38.062 3.313 10.169 1 13.1 ? C1A HEM 154 A 1 HETATM 6 C C2A HEM . . . C 3 39.359 3.37 9.453 1 13.8 ? C2A HEM 154 A 1 HETATM 7 C C3A HEM . . . C 3 39.023 4.159 8.276 1 13 ? C3A HEM 154 A 1 HETATM 8 C C4A HEM . . . C 3 37.721 4.674 8.458 1 12.3 ? C4A HEM 154 A 1 HETATM 9 C CMA HEM . . . C 3 40.038 4.517 7.145 1 12.8 ? CMA HEM 154 A 1 HETATM 10 C CAA HEM . . . C 3 40.694 2.488 9.699 1 14 ? CAA HEM 154 A 1 HETATM 11 C CBA HEM . . . C 3 40.68 1.179 8.911 1 18.1 ? CBA HEM 154 A 1 HETATM 12 C CGA HEM . . . C 3 39.329 0.411 8.888 1 20.9 ? CGA HEM 154 A 1 HETATM 13 O O1A HEM . . . C 3 38.95 -0.183 9.935 1 21.7 ? O1A HEM 154 A 1 HETATM 14 O O2A HEM . . . C 3 38.59 0.493 7.865 1 22 ? O2A HEM 154 A 1 HETATM 15 C C1B HEM . . . C 3 35.801 5.917 7.636 1 10.9 ? C1B HEM 154 A 1 HETATM 16 C C2B HEM . . . C 3 35.253 6.895 6.657 1 11.2 ? C2B HEM 154 A 1 HETATM 17 C C3B HEM . . . C 3 34.073 7.212 7.154 1 11.4 ? C3B HEM 154 A 1 HETATM 18 C C4B HEM . . . C 3 33.837 6.426 8.361 1 11.3 ? C4B HEM 154 A 1 HETATM 19 C CMB HEM . . . C 3 35.911 7.473 5.386 1 10.4 ? CMB HEM 154 A 1 HETATM 20 C CAB HEM . . . C 3 33.047 8.054 6.556 1 11.5 ? CAB HEM 154 A 1 HETATM 21 C CBB HEM . . . C 3 33.099 9.454 6.252 1 13.5 ? CBB HEM 154 A 1 HETATM 22 C C1C HEM . . . C 3 32.475 5.695 10.361 1 12.4 ? C1C HEM 154 A 1 HETATM 23 C C2C HEM . . . C 3 31.242 5.783 11.176 1 12.2 ? C2C HEM 154 A 1 HETATM 24 C C3C HEM . . . C 3 31.442 4.917 12.296 1 14.1 ? C3C HEM 154 A 1 HETATM 25 C C4C HEM . . . C 3 32.808 4.351 12.028 1 13.8 ? C4C HEM 154 A 1 HETATM 26 C CMC HEM . . . C 3 30.075 6.706 10.837 1 10.3 ? CMC HEM 154 A 1 HETATM 27 C CAC HEM . . . C 3 30.606 4.64 13.556 1 12.4 ? CAC HEM 154 A 1 HETATM 28 C CBC HEM . . . C 3 29.491 5.487 13.91 1 13.2 ? CBC HEM 154 A 1 HETATM 29 C C1D HEM . . . C 3 34.64 3.023 12.865 1 14.6 ? C1D HEM 154 A 1 HETATM 30 C C2D HEM . . . C 3 35.304 2.042 13.748 1 16.1 ? C2D HEM 154 A 1 HETATM 31 C C3D HEM . . . C 3 36.54 1.872 13.413 1 15.8 ? C3D HEM 154 A 1 HETATM 32 C C4D HEM . . . C 3 36.705 2.613 12.172 1 14.8 ? C4D HEM 154 A 1 HETATM 33 C CMD HEM . . . C 3 34.566 1.382 14.927 1 16.3 ? CMD HEM 154 A 1 HETATM 34 C CAD HEM . . . C 3 37.699 1.313 14.188 1 20.2 ? CAD HEM 154 A 1 HETATM 35 C CBD HEM . . . C 3 38.311 2.383 15.106 1 24.9 ? CBD HEM 154 A 1 HETATM 36 C CGD HEM . . . C 3 39.48 1.863 15.984 1 29.1 ? CGD HEM 154 A 1 HETATM 37 O O1D HEM . . . C 3 39.262 1.578 17.176 1 33.6 ? O1D HEM 154 A 1 HETATM 38 O O2D HEM . . . C 3 40.454 1.356 15.446 1 30.4 ? O2D HEM 154 A 1 HETATM 39 N NA HEM . . . C 3 37.016 4.082 9.65 1 12.2 ? NA HEM 154 A 1 HETATM 40 N NB HEM . . . C 3 34.919 5.69 8.644 1 10.5 ? NB HEM 154 A 1 HETATM 41 N NC HEM . . . C 3 33.434 4.837 10.799 1 12.6 ? NC HEM 154 A 1 HETATM 42 N ND HEM . . . C 3 35.56 3.276 11.863 1 14 ? ND HEM 154 A 1 HETATM 43 FE FE HEM . . . C 3 35.149 4.293 10.159 1 13 ? FE HEM 154 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 43 #