data_2MJP # _model_server_result.job_id to-HMb01OSWJ9sau0AdOLg _model_server_result.datetime_utc '2025-02-17 10:16:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mjp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 2MJP # _exptl.entry_id 2MJP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2MJP _cell.length_a 44.36 _cell.length_b 72.13 _cell.length_c 140.53 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MJP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 2MJP _atom_sites.fract_transf_matrix[1][1] 0.022543 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 500 500 ANP ANP . D 3 HOH A 1 501 1 HOH HOH . D 3 HOH A 2 502 2 HOH HOH . D 3 HOH A 3 503 3 HOH HOH . D 3 HOH A 4 504 4 HOH HOH . D 3 HOH A 5 505 5 HOH HOH . D 3 HOH A 6 506 6 HOH HOH . D 3 HOH A 7 507 7 HOH HOH . D 3 HOH A 8 508 8 HOH HOH . D 3 HOH A 9 509 9 HOH HOH . D 3 HOH A 10 510 10 HOH HOH . D 3 HOH A 11 511 12 HOH HOH . D 3 HOH A 12 512 13 HOH HOH . D 3 HOH A 13 513 14 HOH HOH . D 3 HOH A 14 514 16 HOH HOH . D 3 HOH A 15 515 17 HOH HOH . D 3 HOH A 16 516 18 HOH HOH . D 3 HOH A 17 517 19 HOH HOH . D 3 HOH A 18 518 20 HOH HOH . D 3 HOH A 19 519 21 HOH HOH . D 3 HOH A 20 520 22 HOH HOH . D 3 HOH A 21 521 23 HOH HOH . D 3 HOH A 22 522 25 HOH HOH . D 3 HOH A 23 523 26 HOH HOH . D 3 HOH A 24 524 27 HOH HOH . D 3 HOH A 25 525 28 HOH HOH . D 3 HOH A 26 526 29 HOH HOH . D 3 HOH A 27 527 30 HOH HOH . D 3 HOH A 28 528 31 HOH HOH . D 3 HOH A 29 529 32 HOH HOH . D 3 HOH A 30 530 33 HOH HOH . D 3 HOH A 31 531 36 HOH HOH . D 3 HOH A 32 532 38 HOH HOH . D 3 HOH A 33 533 40 HOH HOH . D 3 HOH A 34 534 41 HOH HOH . D 3 HOH A 35 535 42 HOH HOH . D 3 HOH A 36 536 44 HOH HOH . D 3 HOH A 37 537 45 HOH HOH . D 3 HOH A 38 538 47 HOH HOH . D 3 HOH A 39 539 49 HOH HOH . D 3 HOH A 40 540 53 HOH HOH . D 3 HOH A 41 541 56 HOH HOH . D 3 HOH A 42 542 57 HOH HOH . D 3 HOH A 43 543 59 HOH HOH . D 3 HOH A 44 544 60 HOH HOH . D 3 HOH A 45 545 61 HOH HOH . D 3 HOH A 46 546 62 HOH HOH . D 3 HOH A 47 547 64 HOH HOH . D 3 HOH A 48 548 65 HOH HOH . D 3 HOH A 49 549 66 HOH HOH . D 3 HOH A 50 550 67 HOH HOH . D 3 HOH A 51 551 69 HOH HOH . D 3 HOH A 52 552 75 HOH HOH . D 3 HOH A 53 553 76 HOH HOH . D 3 HOH A 54 554 78 HOH HOH . D 3 HOH A 55 555 79 HOH HOH . D 3 HOH A 56 556 80 HOH HOH . D 3 HOH A 57 557 81 HOH HOH . D 3 HOH A 58 558 82 HOH HOH . D 3 HOH A 59 559 86 HOH HOH . D 3 HOH A 60 560 89 HOH HOH . D 3 HOH A 61 561 90 HOH HOH . D 3 HOH A 62 562 91 HOH HOH . D 3 HOH A 63 563 96 HOH HOH . D 3 HOH A 64 564 99 HOH HOH . D 3 HOH A 65 565 101 HOH HOH . D 3 HOH A 66 566 107 HOH HOH . D 3 HOH A 67 567 109 HOH HOH . D 3 HOH A 68 568 110 HOH HOH . D 3 HOH A 69 569 112 HOH HOH . D 3 HOH A 70 570 116 HOH HOH . D 3 HOH A 71 571 122 HOH HOH . D 3 HOH A 72 572 124 HOH HOH . D 3 HOH A 73 573 126 HOH HOH . D 3 HOH A 74 574 127 HOH HOH . D 3 HOH A 75 575 128 HOH HOH . D 3 HOH A 76 576 131 HOH HOH . D 3 HOH A 77 577 132 HOH HOH . D 3 HOH A 78 578 133 HOH HOH . D 3 HOH A 79 579 138 HOH HOH . D 3 HOH A 80 580 144 HOH HOH . D 3 HOH A 81 581 147 HOH HOH . D 3 HOH A 82 582 148 HOH HOH . D 3 HOH A 83 583 150 HOH HOH . D 3 HOH A 84 584 151 HOH HOH . D 3 HOH A 85 585 153 HOH HOH . D 3 HOH A 86 586 155 HOH HOH . D 3 HOH A 87 587 157 HOH HOH . D 3 HOH A 88 588 162 HOH HOH . D 3 HOH A 89 589 163 HOH HOH . D 3 HOH A 90 590 165 HOH HOH . D 3 HOH A 91 591 166 HOH HOH . D 3 HOH A 92 592 168 HOH HOH . D 3 HOH A 93 593 174 HOH HOH . D 3 HOH A 94 594 177 HOH HOH . D 3 HOH A 95 595 181 HOH HOH . D 3 HOH A 96 596 186 HOH HOH . D 3 HOH A 97 597 189 HOH HOH . D 3 HOH A 98 598 193 HOH HOH . D 3 HOH A 99 599 194 HOH HOH . D 3 HOH A 100 600 195 HOH HOH . D 3 HOH A 101 601 197 HOH HOH . D 3 HOH A 102 602 199 HOH HOH . D 3 HOH A 103 603 200 HOH HOH . D 3 HOH A 104 604 203 HOH HOH . D 3 HOH A 105 605 218 HOH HOH . D 3 HOH A 106 606 221 HOH HOH . E 3 HOH B 1 194 11 HOH HOH . E 3 HOH B 2 195 15 HOH HOH . E 3 HOH B 3 196 34 HOH HOH . E 3 HOH B 4 197 35 HOH HOH . E 3 HOH B 5 198 37 HOH HOH . E 3 HOH B 6 199 39 HOH HOH . E 3 HOH B 7 200 43 HOH HOH . E 3 HOH B 8 201 46 HOH HOH . E 3 HOH B 9 202 48 HOH HOH . E 3 HOH B 10 203 51 HOH HOH . E 3 HOH B 11 204 52 HOH HOH . E 3 HOH B 12 205 73 HOH HOH . E 3 HOH B 13 206 74 HOH HOH . E 3 HOH B 14 207 83 HOH HOH . E 3 HOH B 15 208 87 HOH HOH . E 3 HOH B 16 209 88 HOH HOH . E 3 HOH B 17 210 95 HOH HOH . E 3 HOH B 18 211 98 HOH HOH . E 3 HOH B 19 212 102 HOH HOH . E 3 HOH B 20 213 105 HOH HOH . E 3 HOH B 21 214 106 HOH HOH . E 3 HOH B 22 215 108 HOH HOH . E 3 HOH B 23 216 113 HOH HOH . E 3 HOH B 24 217 114 HOH HOH . E 3 HOH B 25 218 115 HOH HOH . E 3 HOH B 26 219 118 HOH HOH . E 3 HOH B 27 220 119 HOH HOH . E 3 HOH B 28 221 120 HOH HOH . E 3 HOH B 29 222 125 HOH HOH . E 3 HOH B 30 223 130 HOH HOH . E 3 HOH B 31 224 135 HOH HOH . E 3 HOH B 32 225 136 HOH HOH . E 3 HOH B 33 226 141 HOH HOH . E 3 HOH B 34 227 143 HOH HOH . E 3 HOH B 35 228 154 HOH HOH . E 3 HOH B 36 229 156 HOH HOH . E 3 HOH B 37 230 158 HOH HOH . E 3 HOH B 38 231 159 HOH HOH . E 3 HOH B 39 232 161 HOH HOH . E 3 HOH B 40 233 164 HOH HOH . E 3 HOH B 41 234 167 HOH HOH . E 3 HOH B 42 235 178 HOH HOH . E 3 HOH B 43 236 182 HOH HOH . E 3 HOH B 44 237 185 HOH HOH . E 3 HOH B 45 238 188 HOH HOH . E 3 HOH B 46 239 196 HOH HOH . E 3 HOH B 47 240 204 HOH HOH . E 3 HOH B 48 241 207 HOH HOH . E 3 HOH B 49 242 209 HOH HOH . E 3 HOH B 50 243 211 HOH HOH . E 3 HOH B 51 244 212 HOH HOH . E 3 HOH B 52 245 214 HOH HOH . E 3 HOH B 53 246 219 HOH HOH . E 3 HOH B 54 247 220 HOH HOH . E 3 HOH B 55 248 222 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . C 2 23.112 15.496 -6.072 1 45.18 ? PG ANP 500 A 1 HETATM 2 O O1G ANP . . . C 2 21.782 15.318 -6.715 1 43.58 ? O1G ANP 500 A 1 HETATM 3 O O2G ANP . . . C 2 24.249 15.659 -7.039 1 42.1 ? O2G ANP 500 A 1 HETATM 4 O O3G ANP . . . C 2 23.084 16.586 -5.049 1 41.21 ? O3G ANP 500 A 1 HETATM 5 P PB ANP . . . C 2 22.339 13.331 -4.125 1 45.55 ? PB ANP 500 A 1 HETATM 6 O O1B ANP . . . C 2 22.654 11.875 -4.133 1 40.22 ? O1B ANP 500 A 1 HETATM 7 O O2B ANP . . . C 2 20.93 13.752 -4.411 1 41.84 ? O2B ANP 500 A 1 HETATM 8 N N3B ANP . . . C 2 23.351 14.116 -5.206 1 43.02 ? N3B ANP 500 A 1 HETATM 9 P PA ANP . . . C 2 24.156 14.269 -1.89 1 48.51 ? PA ANP 500 A 1 HETATM 10 O O1A ANP . . . C 2 25.094 15.009 -2.797 1 45.6 ? O1A ANP 500 A 1 HETATM 11 O O2A ANP . . . C 2 23.815 14.858 -0.564 1 42.97 ? O2A ANP 500 A 1 HETATM 12 O O3A ANP . . . C 2 22.801 13.945 -2.717 1 45.86 ? O3A ANP 500 A 1 HETATM 13 O O5' ANP . . . C 2 24.642 12.753 -1.737 1 44.88 ? O5' ANP 500 A 1 HETATM 14 C C5' ANP . . . C 2 23.943 11.819 -0.867 1 39.03 ? C5' ANP 500 A 1 HETATM 15 C C4' ANP . . . C 2 24.484 10.407 -0.9 1 35.29 ? C4' ANP 500 A 1 HETATM 16 O O4' ANP . . . C 2 25.9 10.268 -0.619 1 34.72 ? O4' ANP 500 A 1 HETATM 17 C C3' ANP . . . C 2 23.753 9.43 0.009 1 34.15 ? C3' ANP 500 A 1 HETATM 18 O O3' ANP . . . C 2 23.024 8.563 -0.836 1 36.69 ? O3' ANP 500 A 1 HETATM 19 C C2' ANP . . . C 2 24.792 8.7 0.794 1 31.93 ? C2' ANP 500 A 1 HETATM 20 O O2' ANP . . . C 2 24.795 7.285 0.551 1 29.57 ? O2' ANP 500 A 1 HETATM 21 C C1' ANP . . . C 2 26.137 9.233 0.371 1 32.68 ? C1' ANP 500 A 1 HETATM 22 N N9 ANP . . . C 2 27.028 9.651 1.526 1 32.07 ? N9 ANP 500 A 1 HETATM 23 C C8 ANP . . . C 2 26.718 9.912 2.854 1 32.35 ? C8 ANP 500 A 1 HETATM 24 N N7 ANP . . . C 2 27.737 10.237 3.608 1 32.42 ? N7 ANP 500 A 1 HETATM 25 C C5 ANP . . . C 2 28.81 10.188 2.716 1 31.85 ? C5 ANP 500 A 1 HETATM 26 C C6 ANP . . . C 2 30.241 10.43 2.865 1 31.34 ? C6 ANP 500 A 1 HETATM 27 N N6 ANP . . . C 2 30.757 10.77 4.022 1 30.57 ? N6 ANP 500 A 1 HETATM 28 N N1 ANP . . . C 2 31.049 10.296 1.762 1 29.52 ? N1 ANP 500 A 1 HETATM 29 C C2 ANP . . . C 2 30.5 9.944 0.583 1 30.23 ? C2 ANP 500 A 1 HETATM 30 N N3 ANP . . . C 2 29.189 9.687 0.31 1 27.8 ? N3 ANP 500 A 1 HETATM 31 C C4 ANP . . . C 2 28.389 9.832 1.442 1 31.38 ? C4 ANP 500 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 31 #