data_2MK7 # _model_server_result.job_id dAIt9U_sv4wpo21nLe1plw _model_server_result.datetime_utc '2025-07-03 01:48:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mk7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":104}' # _entry.id 2MK7 # _exptl.entry_id 2MK7 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-alpha-D-galactopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ACE 1 A ACE 1 1_555 A N PRO 2 A PRO 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 A OG1 THR 4 A THR 4 1_555 B C1 A2G . A A2G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale3 A OG1 THR 5 A THR 5 1_555 C C1 A2G . A A2G 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale4 A OG1 THR 6 A THR 6 1_555 D C1 A2G . A A2G 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale5 A OG1 THR 7 A THR 7 1_555 E C1 A2G . A A2G 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale6 A C PRO 10 A PRO 10 1_555 A N NH2 11 A NH2 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.306 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id A2G _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-alpha-D-galactopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms N-acetyl-alpha-D-galactosamine;2-acetamido-2-deoxy-alpha-D-galactose;2-acetamido-2-deoxy-D-galactose;2-acetamido-2-deoxy-galactose;N-ACETYL-2-DEOXY-2-AMINO-GALACTOSE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O5 C5 A2G sing 1 n n C1 O5 A2G sing 2 n n C1 C2 A2G sing 3 n n C1 H1 A2G sing 4 n n O1 C1 A2G sing 5 n n O1 HO1 A2G sing 6 n n C2 C3 A2G sing 7 n n C2 H2 A2G sing 8 n n N2 C2 A2G sing 9 n n N2 HN2 A2G sing 10 n n C3 C4 A2G sing 11 n n C3 O3 A2G sing 12 n n C3 H3 A2G sing 13 n n O3 HO3 A2G sing 14 n n C4 O4 A2G sing 15 n n C4 H4 A2G sing 16 n n O4 HO4 A2G sing 17 n n C5 C4 A2G sing 18 n n C5 C6 A2G sing 19 n n C5 H5 A2G sing 20 n n C6 O6 A2G sing 21 n n C6 H61 A2G sing 22 n n C7 N2 A2G sing 23 n n O7 C7 A2G doub 24 n n C8 C7 A2G sing 25 n n C8 H81 A2G sing 26 n n C8 H82 A2G sing 27 n n C8 H83 A2G sing 28 n n C6 H62 A2G sing 29 n n O6 HO6 A2G sing 30 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version A2G DGalpNAca 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 A2G N-acetyl-a-D-galactopyranosamine 'COMMON NAME' GMML 1 A2G a-D-GalpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 A2G GalNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2MK7 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A2G A 1 101 12 A2G A2G . C 2 A2G A 1 102 13 A2G A2G . D 2 A2G A 1 103 14 A2G A2G . E 2 A2G A 1 104 15 A2G A2G . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 A2G . . . E 2 4.957 -5.628 5.474 1 0 ? O5 A2G 104 A 1 HETATM 2 C C1 A2G . . . E 2 4.865 -6.168 6.772 1 0 ? C1 A2G 104 A 1 HETATM 3 C C2 A2G . . . E 2 3.625 -5.578 7.447 1 0 ? C2 A2G 104 A 1 HETATM 4 N N2 A2G . . . E 2 3.497 -6.099 8.803 1 0 ? N2 A2G 104 A 1 HETATM 5 C C3 A2G . . . E 2 2.387 -5.94 6.624 1 0 ? C3 A2G 104 A 1 HETATM 6 O O3 A2G . . . E 2 1.252 -5.281 7.167 1 0 ? O3 A2G 104 A 1 HETATM 7 C C4 A2G . . . E 2 2.587 -5.496 5.172 1 0 ? C4 A2G 104 A 1 HETATM 8 O O4 A2G . . . E 2 2.618 -4.078 5.112 1 0 ? O4 A2G 104 A 1 HETATM 9 C C5 A2G . . . E 2 3.907 -6.057 4.636 1 0 ? C5 A2G 104 A 1 HETATM 10 C C6 A2G . . . E 2 4.158 -5.522 3.225 1 0 ? C6 A2G 104 A 1 HETATM 11 O O6 A2G . . . E 2 2.981 -4.891 2.742 1 0 ? O6 A2G 104 A 1 HETATM 12 C C7 A2G . . . E 2 3.507 -5.286 9.854 1 0 ? C7 A2G 104 A 1 HETATM 13 O O7 A2G . . . E 2 3.624 -4.064 9.756 1 0 ? O7 A2G 104 A 1 HETATM 14 C C8 A2G . . . E 2 3.434 -5.955 11.223 1 0 ? C8 A2G 104 A 1 HETATM 15 H H1 A2G . . . E 2 5.742 -5.897 7.342 1 0 ? H1 A2G 104 A 1 HETATM 16 H H2 A2G . . . E 2 3.722 -4.504 7.488 1 0 ? H2 A2G 104 A 1 HETATM 17 H HN2 A2G . . . E 2 3.401 -7.064 8.941 1 0 ? HN2 A2G 104 A 1 HETATM 18 H H3 A2G . . . E 2 2.231 -7.008 6.658 1 0 ? H3 A2G 104 A 1 HETATM 19 H HO3 A2G . . . E 2 1.122 -5.603 8.062 1 0 ? HO3 A2G 104 A 1 HETATM 20 H H4 A2G . . . E 2 1.769 -5.863 4.569 1 0 ? H4 A2G 104 A 1 HETATM 21 H HO4 A2G . . . E 2 3.353 -3.82 4.551 1 0 ? HO4 A2G 104 A 1 HETATM 22 H H5 A2G . . . E 2 3.864 -7.136 4.613 1 0 ? H5 A2G 104 A 1 HETATM 23 H H61 A2G . . . E 2 4.966 -4.806 3.249 1 0 ? H61 A2G 104 A 1 HETATM 24 H H81 A2G . . . E 2 2.472 -5.755 11.67 1 0 ? H81 A2G 104 A 1 HETATM 25 H H82 A2G . . . E 2 4.215 -5.564 11.857 1 0 ? H82 A2G 104 A 1 HETATM 26 H H83 A2G . . . E 2 3.563 -7.022 11.109 1 0 ? H83 A2G 104 A 1 HETATM 27 H H62 A2G . . . E 2 4.421 -6.34 2.571 1 0 ? H62 A2G 104 A 1 HETATM 28 H HO6 A2G . . . E 2 2.876 -5.127 1.817 1 0 ? HO6 A2G 104 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 5096 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 28 #