data_2MLL # _model_server_result.job_id Ks6vhbxZJvDpWiro39199w _model_server_result.datetime_utc '2024-10-14 08:27:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mll # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2MLL # _exptl.entry_id 2MLL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2MLL _cell.length_a 107.648 _cell.length_b 107.648 _cell.length_c 311.278 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MLL _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 241 A CYS 241 1_555 B SG CYS 1 B CYS 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf2 B SG CYS 60 B CYS 60 1_555 B SG CYS 77 B CYS 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf3 B SG CYS 148 B CYS 148 1_555 B SG CYS 161 B CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? disulf ? disulf4 B SG CYS 186 B CYS 186 1_555 B SG CYS 202 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? covale ? covale1 B ND2 ASN 92 B ASN 92 1_555 D C1 NAG . B NAG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 ? covale ? covale2 B ND2 ASN 132 B ASN 132 1_555 E C1 NAG . B NAG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2MLL _atom_sites.fract_transf_matrix[1][1] 0.009289 _atom_sites.fract_transf_matrix[1][2] 0.005363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010727 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003212 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 303 303 NAG NAG . D 3 NAG B 1 301 301 NAG NAG . E 3 NAG B 1 302 302 NAG NAG . F 4 HOH A 1 304 1 HOH HOH . F 4 HOH A 2 305 2 HOH HOH . F 4 HOH A 3 306 3 HOH HOH . F 4 HOH A 4 307 7 HOH HOH . F 4 HOH A 5 308 8 HOH HOH . F 4 HOH A 6 309 11 HOH HOH . F 4 HOH A 7 310 16 HOH HOH . F 4 HOH A 8 311 20 HOH HOH . F 4 HOH A 9 312 25 HOH HOH . F 4 HOH A 10 313 31 HOH HOH . F 4 HOH A 11 314 36 HOH HOH . F 4 HOH A 12 315 40 HOH HOH . F 4 HOH A 13 316 42 HOH HOH . F 4 HOH A 14 317 44 HOH HOH . F 4 HOH A 15 318 45 HOH HOH . F 4 HOH A 16 319 46 HOH HOH . F 4 HOH A 17 320 48 HOH HOH . F 4 HOH A 18 321 49 HOH HOH . F 4 HOH A 19 322 50 HOH HOH . F 4 HOH A 20 323 54 HOH HOH . F 4 HOH A 21 324 59 HOH HOH . F 4 HOH A 22 325 60 HOH HOH . F 4 HOH A 23 326 64 HOH HOH . F 4 HOH A 24 327 66 HOH HOH . F 4 HOH A 25 328 68 HOH HOH . F 4 HOH A 26 329 70 HOH HOH . F 4 HOH A 27 330 73 HOH HOH . F 4 HOH A 28 331 77 HOH HOH . F 4 HOH A 29 332 78 HOH HOH . F 4 HOH A 30 333 79 HOH HOH . F 4 HOH A 31 334 81 HOH HOH . F 4 HOH A 32 335 82 HOH HOH . F 4 HOH A 33 336 83 HOH HOH . F 4 HOH A 34 337 84 HOH HOH . F 4 HOH A 35 338 85 HOH HOH . F 4 HOH A 36 339 86 HOH HOH . F 4 HOH A 37 340 87 HOH HOH . F 4 HOH A 38 341 93 HOH HOH . F 4 HOH A 39 342 94 HOH HOH . F 4 HOH A 40 343 95 HOH HOH . F 4 HOH A 41 344 96 HOH HOH . F 4 HOH A 42 345 103 HOH HOH . F 4 HOH A 43 346 104 HOH HOH . F 4 HOH A 44 347 105 HOH HOH . F 4 HOH A 45 348 107 HOH HOH . F 4 HOH A 46 349 109 HOH HOH . F 4 HOH A 47 350 113 HOH HOH . F 4 HOH A 48 351 114 HOH HOH . F 4 HOH A 49 352 125 HOH HOH . F 4 HOH A 50 353 126 HOH HOH . F 4 HOH A 51 354 127 HOH HOH . F 4 HOH A 52 355 128 HOH HOH . F 4 HOH A 53 356 129 HOH HOH . F 4 HOH A 54 357 130 HOH HOH . F 4 HOH A 55 358 131 HOH HOH . F 4 HOH A 56 359 132 HOH HOH . F 4 HOH A 57 360 133 HOH HOH . F 4 HOH A 58 361 134 HOH HOH . F 4 HOH A 59 362 135 HOH HOH . F 4 HOH A 60 363 138 HOH HOH . F 4 HOH A 61 364 139 HOH HOH . F 4 HOH A 62 365 140 HOH HOH . F 4 HOH A 63 366 141 HOH HOH . F 4 HOH A 64 367 142 HOH HOH . F 4 HOH A 65 368 145 HOH HOH . F 4 HOH A 66 369 146 HOH HOH . F 4 HOH A 67 370 148 HOH HOH . F 4 HOH A 68 371 149 HOH HOH . F 4 HOH A 69 372 150 HOH HOH . F 4 HOH A 70 373 161 HOH HOH . F 4 HOH A 71 374 162 HOH HOH . F 4 HOH A 72 375 163 HOH HOH . F 4 HOH A 73 376 169 HOH HOH . F 4 HOH A 74 377 170 HOH HOH . F 4 HOH A 75 378 171 HOH HOH . F 4 HOH A 76 379 172 HOH HOH . F 4 HOH A 77 380 173 HOH HOH . F 4 HOH A 78 381 175 HOH HOH . F 4 HOH A 79 382 176 HOH HOH . F 4 HOH A 80 383 177 HOH HOH . F 4 HOH A 81 384 178 HOH HOH . F 4 HOH A 82 385 179 HOH HOH . F 4 HOH A 83 386 180 HOH HOH . F 4 HOH A 84 387 185 HOH HOH . F 4 HOH A 85 388 186 HOH HOH . F 4 HOH A 86 389 188 HOH HOH . F 4 HOH A 87 390 189 HOH HOH . F 4 HOH A 88 391 190 HOH HOH . F 4 HOH A 89 392 191 HOH HOH . F 4 HOH A 90 393 192 HOH HOH . F 4 HOH A 91 394 194 HOH HOH . F 4 HOH A 92 395 197 HOH HOH . F 4 HOH A 93 396 202 HOH HOH . F 4 HOH A 94 397 205 HOH HOH . F 4 HOH A 95 398 206 HOH HOH . F 4 HOH A 96 399 207 HOH HOH . F 4 HOH A 97 400 209 HOH HOH . F 4 HOH A 98 401 210 HOH HOH . F 4 HOH A 99 402 213 HOH HOH . F 4 HOH A 100 403 217 HOH HOH . F 4 HOH A 101 404 218 HOH HOH . F 4 HOH A 102 405 224 HOH HOH . F 4 HOH A 103 406 229 HOH HOH . F 4 HOH A 104 407 230 HOH HOH . F 4 HOH A 105 408 231 HOH HOH . F 4 HOH A 106 409 233 HOH HOH . F 4 HOH A 107 410 234 HOH HOH . F 4 HOH A 108 411 238 HOH HOH . G 4 HOH B 1 303 4 HOH HOH . G 4 HOH B 2 304 5 HOH HOH . G 4 HOH B 3 305 9 HOH HOH . G 4 HOH B 4 306 12 HOH HOH . G 4 HOH B 5 307 13 HOH HOH . G 4 HOH B 6 308 14 HOH HOH . G 4 HOH B 7 309 15 HOH HOH . G 4 HOH B 8 310 19 HOH HOH . G 4 HOH B 9 311 23 HOH HOH . G 4 HOH B 10 312 26 HOH HOH . G 4 HOH B 11 313 28 HOH HOH . G 4 HOH B 12 314 30 HOH HOH . G 4 HOH B 13 315 32 HOH HOH . G 4 HOH B 14 316 33 HOH HOH . G 4 HOH B 15 317 34 HOH HOH . G 4 HOH B 16 318 37 HOH HOH . G 4 HOH B 17 319 38 HOH HOH . G 4 HOH B 18 320 39 HOH HOH . G 4 HOH B 19 321 41 HOH HOH . G 4 HOH B 20 322 43 HOH HOH . G 4 HOH B 21 323 47 HOH HOH . G 4 HOH B 22 324 51 HOH HOH . G 4 HOH B 23 325 52 HOH HOH . G 4 HOH B 24 326 53 HOH HOH . G 4 HOH B 25 327 55 HOH HOH . G 4 HOH B 26 328 56 HOH HOH . G 4 HOH B 27 329 57 HOH HOH . G 4 HOH B 28 330 58 HOH HOH . G 4 HOH B 29 331 61 HOH HOH . G 4 HOH B 30 332 62 HOH HOH . G 4 HOH B 31 333 63 HOH HOH . G 4 HOH B 32 334 65 HOH HOH . G 4 HOH B 33 335 71 HOH HOH . G 4 HOH B 34 336 72 HOH HOH . G 4 HOH B 35 337 74 HOH HOH . G 4 HOH B 36 338 75 HOH HOH . G 4 HOH B 37 339 76 HOH HOH . G 4 HOH B 38 340 80 HOH HOH . G 4 HOH B 39 341 89 HOH HOH . G 4 HOH B 40 342 90 HOH HOH . G 4 HOH B 41 343 91 HOH HOH . G 4 HOH B 42 344 92 HOH HOH . G 4 HOH B 43 345 97 HOH HOH . G 4 HOH B 44 346 98 HOH HOH . G 4 HOH B 45 347 99 HOH HOH . G 4 HOH B 46 348 100 HOH HOH . G 4 HOH B 47 349 101 HOH HOH . G 4 HOH B 48 350 102 HOH HOH . G 4 HOH B 49 351 106 HOH HOH . G 4 HOH B 50 352 110 HOH HOH . G 4 HOH B 51 353 111 HOH HOH . G 4 HOH B 52 354 112 HOH HOH . G 4 HOH B 53 355 115 HOH HOH . G 4 HOH B 54 356 116 HOH HOH . G 4 HOH B 55 357 117 HOH HOH . G 4 HOH B 56 358 118 HOH HOH . G 4 HOH B 57 359 119 HOH HOH . G 4 HOH B 58 360 120 HOH HOH . G 4 HOH B 59 361 121 HOH HOH . G 4 HOH B 60 362 122 HOH HOH . G 4 HOH B 61 363 123 HOH HOH . G 4 HOH B 62 364 124 HOH HOH . G 4 HOH B 63 365 147 HOH HOH . G 4 HOH B 64 366 151 HOH HOH . G 4 HOH B 65 367 153 HOH HOH . G 4 HOH B 66 368 154 HOH HOH . G 4 HOH B 67 369 155 HOH HOH . G 4 HOH B 68 370 156 HOH HOH . G 4 HOH B 69 371 157 HOH HOH . G 4 HOH B 70 372 158 HOH HOH . G 4 HOH B 71 373 159 HOH HOH . G 4 HOH B 72 374 164 HOH HOH . G 4 HOH B 73 375 165 HOH HOH . G 4 HOH B 74 376 166 HOH HOH . G 4 HOH B 75 377 167 HOH HOH . G 4 HOH B 76 378 174 HOH HOH . G 4 HOH B 77 379 182 HOH HOH . G 4 HOH B 78 380 183 HOH HOH . G 4 HOH B 79 381 184 HOH HOH . G 4 HOH B 80 382 187 HOH HOH . G 4 HOH B 81 383 195 HOH HOH . G 4 HOH B 82 384 196 HOH HOH . G 4 HOH B 83 385 198 HOH HOH . G 4 HOH B 84 386 199 HOH HOH . G 4 HOH B 85 387 200 HOH HOH . G 4 HOH B 86 388 201 HOH HOH . G 4 HOH B 87 389 203 HOH HOH . G 4 HOH B 88 390 204 HOH HOH . G 4 HOH B 89 391 208 HOH HOH . G 4 HOH B 90 392 211 HOH HOH . G 4 HOH B 91 393 214 HOH HOH . G 4 HOH B 92 394 215 HOH HOH . G 4 HOH B 93 395 216 HOH HOH . G 4 HOH B 94 396 219 HOH HOH . G 4 HOH B 95 397 220 HOH HOH . G 4 HOH B 96 398 221 HOH HOH . G 4 HOH B 97 399 222 HOH HOH . G 4 HOH B 98 400 223 HOH HOH . G 4 HOH B 99 401 225 HOH HOH . G 4 HOH B 100 402 226 HOH HOH . G 4 HOH B 101 403 227 HOH HOH . G 4 HOH B 102 404 228 HOH HOH . G 4 HOH B 103 405 232 HOH HOH . G 4 HOH B 104 406 235 HOH HOH . G 4 HOH B 105 407 236 HOH HOH . G 4 HOH B 106 408 237 HOH HOH . G 4 HOH B 107 409 239 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . D 3 67.164 55.892 -6.335 1 61.37 ? C1 NAG 301 B 1 HETATM 2 C C2 NAG . . . D 3 67.513 57.273 -5.841 1 63.9 ? C2 NAG 301 B 1 HETATM 3 C C3 NAG . . . D 3 69.009 57.436 -5.813 1 67.58 ? C3 NAG 301 B 1 HETATM 4 C C4 NAG . . . D 3 69.516 56.543 -4.66 1 69.32 ? C4 NAG 301 B 1 HETATM 5 C C5 NAG . . . D 3 69.098 55.078 -4.937 1 67.39 ? C5 NAG 301 B 1 HETATM 6 C C6 NAG . . . D 3 69.064 54.345 -3.594 1 67.65 ? C6 NAG 301 B 1 HETATM 7 C C7 NAG . . . D 3 66.386 59.445 -6.313 1 78.58 ? C7 NAG 301 B 1 HETATM 8 C C8 NAG . . . D 3 66.068 60.439 -7.375 0.5 80.61 ? C8 NAG 301 B 1 HETATM 9 N N2 NAG . . . D 3 66.977 58.308 -6.734 1 74.03 ? N2 NAG 301 B 1 HETATM 10 O O3 NAG . . . D 3 69.26 58.813 -5.591 0.5 66.39 ? O3 NAG 301 B 1 HETATM 11 O O4 NAG . . . D 3 70.949 56.578 -4.518 0.5 69.05 ? O4 NAG 301 B 1 HETATM 12 O O5 NAG . . . D 3 67.833 54.985 -5.499 1 62.22 ? O5 NAG 301 B 1 HETATM 13 O O6 NAG . . . D 3 70.102 53.46 -3.431 0.5 65.05 ? O6 NAG 301 B 1 HETATM 14 O O7 NAG . . . D 3 66.175 59.645 -5.216 0.5 80.68 ? O7 NAG 301 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 530 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #