data_2MSC # _model_server_result.job_id tYIEoOOlXurqp_IuoCePkw _model_server_result.datetime_utc '2025-02-17 07:11:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2msc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"FC","auth_seq_id":201}' # _entry.id 2MSC # _exptl.entry_id 2MSC _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 443.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id FC _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id O _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 59 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 57 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id GC _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.889 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O11 P2' _chem_comp.formula_weight 443.201 _chem_comp.id GDP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B GDP doub 214 n n PB O2B GDP sing 215 n n PB O3B GDP sing 216 n n PB O3A GDP sing 217 n n O2B HOB2 GDP sing 218 n n O3B HOB3 GDP sing 219 n n O3A PA GDP sing 220 n n PA O1A GDP doub 221 n n PA O2A GDP sing 222 n n PA O5' GDP sing 223 n n O2A HOA2 GDP sing 224 n n O5' C5' GDP sing 225 n n C5' C4' GDP sing 226 n n C5' H5' GDP sing 227 n n C5' "H5''" GDP sing 228 n n C4' O4' GDP sing 229 n n C4' C3' GDP sing 230 n n C4' H4' GDP sing 231 n n O4' C1' GDP sing 232 n n C3' O3' GDP sing 233 n n C3' C2' GDP sing 234 n n C3' H3' GDP sing 235 n n O3' HO3' GDP sing 236 n n C2' O2' GDP sing 237 n n C2' C1' GDP sing 238 n n C2' H2' GDP sing 239 n n O2' HO2' GDP sing 240 n n C1' N9 GDP sing 241 n n C1' H1' GDP sing 242 n n N9 C8 GDP sing 243 n y N9 C4 GDP sing 244 n y C8 N7 GDP doub 245 n y C8 H8 GDP sing 246 n n N7 C5 GDP sing 247 n y C5 C6 GDP sing 248 n n C5 C4 GDP doub 249 n y C6 O6 GDP doub 250 n n C6 N1 GDP sing 251 n n N1 C2 GDP sing 252 n n N1 HN1 GDP sing 253 n n C2 N2 GDP sing 254 n n C2 N3 GDP doub 255 n n N2 HN21 GDP sing 256 n n N2 HN22 GDP sing 257 n n N3 C4 GDP sing 258 n n # _atom_sites.entry_id 2MSC _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PCW A 1 1 1 PCW PCW . E 3 PCW A 1 2 2 PCW PCW . F 3 PCW A 1 3 3 PCW PCW . G 3 PCW A 1 4 4 PCW PCW . H 3 PCW A 1 5 5 PCW PCW . I 3 PCW A 1 6 6 PCW PCW . J 3 PCW A 1 7 7 PCW PCW . K 3 PCW A 1 8 8 PCW PCW . L 3 PCW A 1 9 9 PCW PCW . M 3 PCW A 1 10 10 PCW PCW . N 3 PCW A 1 11 11 PCW PCW . O 3 PCW A 1 12 12 PCW PCW . P 3 PCW A 1 13 13 PCW PCW . Q 3 PCW A 1 14 14 PCW PCW . R 3 PCW A 1 15 15 PCW PCW . S 3 PCW A 1 16 16 PCW PCW . T 3 PCW A 1 17 17 PCW PCW . U 3 PCW A 1 18 18 PCW PCW . V 3 PCW A 1 19 19 PCW PCW . W 3 PCW A 1 20 20 PCW PCW . X 3 PCW A 1 21 21 PCW PCW . Y 3 PCW A 1 22 22 PCW PCW . Z 3 PCW A 1 23 23 PCW PCW . AA 3 PCW A 1 24 24 PCW PCW . BA 3 PCW A 1 25 25 PCW PCW . CA 3 PCW A 1 26 26 PCW PCW . DA 3 PCW A 1 27 27 PCW PCW . EA 3 PCW A 1 28 28 PCW PCW . FA 3 PCW A 1 29 29 PCW PCW . GA 3 PCW A 1 30 30 PCW PCW . HA 3 PCW A 1 31 31 PCW PCW . IA 3 PCW A 1 32 32 PCW PCW . JA 4 17F A 1 33 33 17F 17F . KA 4 17F A 1 34 34 17F 17F . LA 4 17F A 1 35 35 17F 17F . MA 4 17F A 1 36 36 17F 17F . NA 4 17F A 1 37 37 17F 17F . OA 4 17F A 1 38 38 17F 17F . PA 4 17F A 1 39 39 17F 17F . QA 4 17F A 1 40 40 17F 17F . RA 3 PCW A 1 41 41 PCW PCW . SA 3 PCW A 1 42 42 PCW PCW . TA 3 PCW A 1 43 43 PCW PCW . UA 3 PCW A 1 44 44 PCW PCW . VA 3 PCW A 1 45 45 PCW PCW . WA 3 PCW A 1 46 46 PCW PCW . XA 3 PCW A 1 47 47 PCW PCW . YA 3 PCW A 1 48 48 PCW PCW . ZA 3 PCW A 1 49 49 PCW PCW . AB 3 PCW A 1 50 50 PCW PCW . BB 3 PCW A 1 51 51 PCW PCW . CB 3 PCW A 1 52 52 PCW PCW . DB 3 PCW A 1 53 53 PCW PCW . EB 3 PCW A 1 54 54 PCW PCW . FB 3 PCW A 1 55 55 PCW PCW . GB 3 PCW A 1 56 56 PCW PCW . HB 3 PCW A 1 57 57 PCW PCW . IB 3 PCW A 1 58 58 PCW PCW . JB 3 PCW A 1 59 59 PCW PCW . KB 3 PCW A 1 60 60 PCW PCW . LB 3 PCW A 1 61 61 PCW PCW . MB 3 PCW A 1 62 62 PCW PCW . NB 3 PCW A 1 63 63 PCW PCW . OB 3 PCW A 1 64 64 PCW PCW . PB 3 PCW A 1 65 65 PCW PCW . QB 3 PCW A 1 66 66 PCW PCW . RB 3 PCW A 1 67 67 PCW PCW . SB 3 PCW A 1 68 68 PCW PCW . TB 3 PCW A 1 69 69 PCW PCW . UB 3 PCW A 1 70 70 PCW PCW . VB 3 PCW A 1 71 71 PCW PCW . WB 3 PCW A 1 72 72 PCW PCW . XB 4 17F A 1 73 73 17F 17F . YB 4 17F A 1 74 74 17F 17F . ZB 4 17F A 1 75 75 17F 17F . AC 4 17F A 1 76 76 17F 17F . BC 4 17F A 1 77 77 17F 17F . CC 4 17F A 1 78 78 17F 17F . DC 4 17F A 1 79 79 17F 17F . EC 4 17F A 1 80 80 17F 17F . FC 5 GDP B 1 201 201 GDP GDP . GC 6 MG B 1 202 202 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB GDP . . . FC 5 20.548 10.744 -41.452 1 10 ? PB GDP 201 B 1 HETATM 2 O O1B GDP . . . FC 5 20.211 9.366 -40.944 1 10 ? O1B GDP 201 B 1 HETATM 3 O O2B GDP . . . FC 5 20.814 10.698 -42.933 1 10 ? O2B GDP 201 B 1 HETATM 4 O O3B GDP . . . FC 5 19.389 11.673 -41.204 1 10 ? O3B GDP 201 B 1 HETATM 5 O O3A GDP . . . FC 5 21.844 11.332 -40.698 1 10 ? O3A GDP 201 B 1 HETATM 6 P PA GDP . . . FC 5 23.034 10.389 -40.144 1 10 ? PA GDP 201 B 1 HETATM 7 O O1A GDP . . . FC 5 23.706 9.641 -41.266 1 10 ? O1A GDP 201 B 1 HETATM 8 O O2A GDP . . . FC 5 22.55 9.43 -39.084 1 10 ? O2A GDP 201 B 1 HETATM 9 O O5' GDP . . . FC 5 24.046 11.463 -39.504 1 10 ? O5' GDP 201 B 1 HETATM 10 C C5' GDP . . . FC 5 24.266 12.703 -40.177 1 10 ? C5' GDP 201 B 1 HETATM 11 C C4' GDP . . . FC 5 25.259 13.554 -39.401 1 10 ? C4' GDP 201 B 1 HETATM 12 O O4' GDP . . . FC 5 24.654 14.078 -38.214 1 10 ? O4' GDP 201 B 1 HETATM 13 C C3' GDP . . . FC 5 26.493 12.774 -38.981 1 10 ? C3' GDP 201 B 1 HETATM 14 O O3' GDP . . . FC 5 27.661 13.537 -39.306 1 10 ? O3' GDP 201 B 1 HETATM 15 C C2' GDP . . . FC 5 26.312 12.551 -37.495 1 10 ? C2' GDP 201 B 1 HETATM 16 O O2' GDP . . . FC 5 27.552 12.496 -36.782 1 10 ? O2' GDP 201 B 1 HETATM 17 C C1' GDP . . . FC 5 25.428 13.704 -37.065 1 10 ? C1' GDP 201 B 1 HETATM 18 N N9 GDP . . . FC 5 24.545 13.324 -35.937 1 10 ? N9 GDP 201 B 1 HETATM 19 C C8 GDP . . . FC 5 23.547 12.419 -35.941 1 10 ? C8 GDP 201 B 1 HETATM 20 N N7 GDP . . . FC 5 22.973 12.35 -34.712 1 10 ? N7 GDP 201 B 1 HETATM 21 C C5 GDP . . . FC 5 23.601 13.227 -33.912 1 10 ? C5 GDP 201 B 1 HETATM 22 C C6 GDP . . . FC 5 23.514 13.67 -32.495 1 10 ? C6 GDP 201 B 1 HETATM 23 O O6 GDP . . . FC 5 22.661 13.181 -31.73 1 10 ? O6 GDP 201 B 1 HETATM 24 N N1 GDP . . . FC 5 24.375 14.609 -32.066 1 10 ? N1 GDP 201 B 1 HETATM 25 C C2 GDP . . . FC 5 25.308 15.165 -32.863 1 10 ? C2 GDP 201 B 1 HETATM 26 N N2 GDP . . . FC 5 26.141 16.109 -32.353 1 10 ? N2 GDP 201 B 1 HETATM 27 N N3 GDP . . . FC 5 25.449 14.804 -34.169 1 10 ? N3 GDP 201 B 1 HETATM 28 C C4 GDP . . . FC 5 24.642 13.862 -34.728 1 10 ? C4 GDP 201 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 457 _model_server_stats.query_time_ms 2897 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 28 #