data_2MSD # _model_server_result.job_id rEhZG9XrbZIXkELmI3kjHg _model_server_result.datetime_utc '2024-11-04 20:08:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2msd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"XB","auth_seq_id":73}' # _entry.id 2MSD # _exptl.entry_id 2MSD _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 788.043 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 JA N N ? 4 KA N N ? 4 LA N N ? 4 MA N N ? 4 NA N N ? 4 OA N N ? 4 PA N N ? 4 QA N N ? 4 XB N N ? 4 YB N N ? 4 ZB N N ? 4 AC N N ? 4 BC N N ? 4 CC N N ? 4 DC N N ? 4 EC N N # _chem_comp.formula 'C42 H78 N O10 P' _chem_comp.formula_weight 788.043 _chem_comp.id 17F _chem_comp.mon_nstd_flag . _chem_comp.name O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-Dioleoyl-sn-glycero-3-phospho-L-serine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O3 17F sing 1 n n N1 C2 17F sing 2 n n O1 P1 17F doub 3 n n P1 O6 17F sing 4 n n C2 C1 17F sing 5 n n O2 P1 17F sing 6 n n C3 C2 17F sing 7 n n C3 O5 17F sing 8 n n O3 P1 17F sing 9 n n C4 C5 17F sing 10 n n O4 C3 17F doub 11 n n C5 C6 17F sing 12 n n C5 O9 17F sing 13 n n C6 O7 17F sing 14 n n O6 C4 17F sing 15 n n C7 C8 17F sing 16 n n O7 C7 17F sing 17 n n C8 C9 17F sing 18 n n O8 C7 17F doub 19 n n C9 C10 17F sing 20 n n O9 C17 17F sing 21 n n C10 C11 17F sing 22 n n C11 C12 17F sing 23 n n C12 C1X 17F sing 24 n n C17 O10 17F doub 25 n n C17 C18 17F sing 26 n n C18 C19 17F sing 27 n n C19 C20 17F sing 28 n n C20 C1Y 17F sing 29 n n C1Y C1Z 17F sing 30 n n C1X C2X 17F sing 31 n n C2X C21 17F sing 32 n n C21 C22 17F doub 33 z n C22 C23 17F sing 34 n n C23 C24 17F sing 35 n n C24 C25 17F sing 36 n n C25 C26 17F sing 37 n n C26 C27 17F sing 38 n n C27 C28 17F sing 39 n n C28 C29 17F sing 40 n n C29 C30 17F sing 41 n n C1Z C31 17F sing 42 n n C31 C32 17F sing 43 n n C32 C33 17F sing 44 n n C33 C34 17F doub 45 z n C34 C35 17F sing 46 n n C35 C36 17F sing 47 n n C36 C37 17F sing 48 n n C37 C38 17F sing 49 n n C38 C39 17F sing 50 n n C39 C40 17F sing 51 n n C40 C41 17F sing 52 n n C41 C42 17F sing 53 n n C1 H1 17F sing 54 n n C1 H1A 17F sing 55 n n N1 HN1 17F sing 56 n n N1 HN1A 17F sing 57 n n C2 H2 17F sing 58 n n O2 HO2 17F sing 59 n n C4 H4 17F sing 60 n n C4 H4A 17F sing 61 n n C5 H5 17F sing 62 n n O5 HO5 17F sing 63 n n C6 H6 17F sing 64 n n C6 H6A 17F sing 65 n n C8 H8 17F sing 66 n n C8 H8A 17F sing 67 n n C9 H9 17F sing 68 n n C9 H9A 17F sing 69 n n C10 H10 17F sing 70 n n C10 H10A 17F sing 71 n n C11 H11 17F sing 72 n n C11 H11A 17F sing 73 n n C12 H12 17F sing 74 n n C12 H12A 17F sing 75 n n C18 H18 17F sing 76 n n C18 H18A 17F sing 77 n n C19 H19 17F sing 78 n n C19 H19A 17F sing 79 n n C20 H20 17F sing 80 n n C20 H20A 17F sing 81 n n C1X H29 17F sing 82 n n C1X H30 17F sing 83 n n C1Y H31 17F sing 84 n n C1Y H32 17F sing 85 n n C1Z H33 17F sing 86 n n C1Z H34 17F sing 87 n n C2X H35 17F sing 88 n n C2X H36 17F sing 89 n n C21 H37 17F sing 90 n n C22 H38 17F sing 91 n n C23 H39 17F sing 92 n n C23 H40 17F sing 93 n n C24 H41 17F sing 94 n n C24 H42 17F sing 95 n n C25 H43 17F sing 96 n n C25 H44 17F sing 97 n n C26 H45 17F sing 98 n n C26 H46 17F sing 99 n n C27 H47 17F sing 100 n n C27 H48 17F sing 101 n n C28 H49 17F sing 102 n n C28 H50 17F sing 103 n n C29 H51 17F sing 104 n n C29 H52 17F sing 105 n n C30 H53 17F sing 106 n n C30 H54 17F sing 107 n n C30 H55 17F sing 108 n n C31 H56 17F sing 109 n n C31 H57 17F sing 110 n n C32 H58 17F sing 111 n n C32 H59 17F sing 112 n n C33 H60 17F sing 113 n n C34 H61 17F sing 114 n n C35 H62 17F sing 115 n n C35 H63 17F sing 116 n n C36 H64 17F sing 117 n n C36 H65 17F sing 118 n n C37 H66 17F sing 119 n n C37 H67 17F sing 120 n n C38 H68 17F sing 121 n n C38 H69 17F sing 122 n n C39 H70 17F sing 123 n n C39 H71 17F sing 124 n n C40 H72 17F sing 125 n n C40 H73 17F sing 126 n n C41 H74 17F sing 127 n n C41 H75 17F sing 128 n n C42 H76 17F sing 129 n n C42 H77 17F sing 130 n n C42 H78 17F sing 131 n n # _atom_sites.entry_id 2MSD _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 PCW A 1 1 1 PCW PCW . E 3 PCW A 1 2 2 PCW PCW . F 3 PCW A 1 3 3 PCW PCW . G 3 PCW A 1 4 4 PCW PCW . H 3 PCW A 1 5 5 PCW PCW . I 3 PCW A 1 6 6 PCW PCW . J 3 PCW A 1 7 7 PCW PCW . K 3 PCW A 1 8 8 PCW PCW . L 3 PCW A 1 9 9 PCW PCW . M 3 PCW A 1 10 10 PCW PCW . N 3 PCW A 1 11 11 PCW PCW . O 3 PCW A 1 12 12 PCW PCW . P 3 PCW A 1 13 13 PCW PCW . Q 3 PCW A 1 14 14 PCW PCW . R 3 PCW A 1 15 15 PCW PCW . S 3 PCW A 1 16 16 PCW PCW . T 3 PCW A 1 17 17 PCW PCW . U 3 PCW A 1 18 18 PCW PCW . V 3 PCW A 1 19 19 PCW PCW . W 3 PCW A 1 20 20 PCW PCW . X 3 PCW A 1 21 21 PCW PCW . Y 3 PCW A 1 22 22 PCW PCW . Z 3 PCW A 1 23 23 PCW PCW . AA 3 PCW A 1 24 24 PCW PCW . BA 3 PCW A 1 25 25 PCW PCW . CA 3 PCW A 1 26 26 PCW PCW . DA 3 PCW A 1 27 27 PCW PCW . EA 3 PCW A 1 28 28 PCW PCW . FA 3 PCW A 1 29 29 PCW PCW . GA 3 PCW A 1 30 30 PCW PCW . HA 3 PCW A 1 31 31 PCW PCW . IA 3 PCW A 1 32 32 PCW PCW . JA 4 17F A 1 33 33 17F 17F . KA 4 17F A 1 34 34 17F 17F . LA 4 17F A 1 35 35 17F 17F . MA 4 17F A 1 36 36 17F 17F . NA 4 17F A 1 37 37 17F 17F . OA 4 17F A 1 38 38 17F 17F . PA 4 17F A 1 39 39 17F 17F . QA 4 17F A 1 40 40 17F 17F . RA 3 PCW A 1 41 41 PCW PCW . SA 3 PCW A 1 42 42 PCW PCW . TA 3 PCW A 1 43 43 PCW PCW . UA 3 PCW A 1 44 44 PCW PCW . VA 3 PCW A 1 45 45 PCW PCW . WA 3 PCW A 1 46 46 PCW PCW . XA 3 PCW A 1 47 47 PCW PCW . YA 3 PCW A 1 48 48 PCW PCW . ZA 3 PCW A 1 49 49 PCW PCW . AB 3 PCW A 1 50 50 PCW PCW . BB 3 PCW A 1 51 51 PCW PCW . CB 3 PCW A 1 52 52 PCW PCW . DB 3 PCW A 1 53 53 PCW PCW . EB 3 PCW A 1 54 54 PCW PCW . FB 3 PCW A 1 55 55 PCW PCW . GB 3 PCW A 1 56 56 PCW PCW . HB 3 PCW A 1 57 57 PCW PCW . IB 3 PCW A 1 58 58 PCW PCW . JB 3 PCW A 1 59 59 PCW PCW . KB 3 PCW A 1 60 60 PCW PCW . LB 3 PCW A 1 61 61 PCW PCW . MB 3 PCW A 1 62 62 PCW PCW . NB 3 PCW A 1 63 63 PCW PCW . OB 3 PCW A 1 64 64 PCW PCW . PB 3 PCW A 1 65 65 PCW PCW . QB 3 PCW A 1 66 66 PCW PCW . RB 3 PCW A 1 67 67 PCW PCW . SB 3 PCW A 1 68 68 PCW PCW . TB 3 PCW A 1 69 69 PCW PCW . UB 3 PCW A 1 70 70 PCW PCW . VB 3 PCW A 1 71 71 PCW PCW . WB 3 PCW A 1 72 72 PCW PCW . XB 4 17F A 1 73 73 17F 17F . YB 4 17F A 1 74 74 17F 17F . ZB 4 17F A 1 75 75 17F 17F . AC 4 17F A 1 76 76 17F 17F . BC 4 17F A 1 77 77 17F 17F . CC 4 17F A 1 78 78 17F 17F . DC 4 17F A 1 79 79 17F 17F . EC 4 17F A 1 80 80 17F 17F . FC 5 GNP B 1 201 201 GNP GNP . GC 6 MG B 1 202 202 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 17F . . . XB 4 -30.2 9.08 -18.492 1 10 ? C1 17F 73 A 1 HETATM 2 N N1 17F . . . XB 4 -28.676 7.214 -17.79 1 10 ? N1 17F 73 A 1 HETATM 3 O O1 17F . . . XB 4 -29.87 12.034 -19.056 1 10 ? O1 17F 73 A 1 HETATM 4 P P1 17F . . . XB 4 -28.983 11.259 -18.107 1 10 ? P1 17F 73 A 1 HETATM 5 C C2 17F . . . XB 4 -30.056 7.631 -17.995 1 10 ? C2 17F 73 A 1 HETATM 6 O O2 17F . . . XB 4 -27.627 10.859 -18.632 1 10 ? O2 17F 73 A 1 HETATM 7 C C3 17F . . . XB 4 -30.738 6.678 -18.992 1 10 ? C3 17F 73 A 1 HETATM 8 O O3 17F . . . XB 4 -29.646 9.965 -17.579 1 10 ? O3 17F 73 A 1 HETATM 9 C C4 17F . . . XB 4 -27.874 11.555 -15.738 1 10 ? C4 17F 73 A 1 HETATM 10 O O4 17F . . . XB 4 -30.119 5.68 -19.526 1 10 ? O4 17F 73 A 1 HETATM 11 C C5 17F . . . XB 4 -27.715 12.53 -14.535 1 10 ? C5 17F 73 A 1 HETATM 12 O O5 17F . . . XB 4 -31.912 6.838 -19.316 1 10 ? O5 17F 73 A 1 HETATM 13 C C6 17F . . . XB 4 -28.85 12.278 -13.507 1 10 ? C6 17F 73 A 1 HETATM 14 O O6 17F . . . XB 4 -28.687 12.085 -16.784 1 10 ? O6 17F 73 A 1 HETATM 15 C C7 17F . . . XB 4 -29.259 14.341 -12.479 1 10 ? C7 17F 73 A 1 HETATM 16 O O7 17F . . . XB 4 -28.753 13.147 -12.387 1 10 ? O7 17F 73 A 1 HETATM 17 C C8 17F . . . XB 4 -29.036 15.065 -11.129 1 10 ? C8 17F 73 A 1 HETATM 18 O O8 17F . . . XB 4 -29.824 14.887 -13.394 1 10 ? O8 17F 73 A 1 HETATM 19 C C9 17F . . . XB 4 -30.337 15.201 -10.299 1 10 ? C9 17F 73 A 1 HETATM 20 O O9 17F . . . XB 4 -26.425 12.44 -13.923 1 10 ? O9 17F 73 A 1 HETATM 21 C C10 17F . . . XB 4 -30.194 15.926 -8.912 1 10 ? C10 17F 73 A 1 HETATM 22 O O10 17F . . . XB 4 -26.083 14.672 -14.425 1 10 ? O10 17F 73 A 1 HETATM 23 C C11 17F . . . XB 4 -30.51 15.018 -7.665 1 10 ? C11 17F 73 A 1 HETATM 24 C C12 17F . . . XB 4 -30.353 15.807 -6.315 1 10 ? C12 17F 73 A 1 HETATM 25 C C17 17F . . . XB 4 -25.836 13.617 -13.818 1 10 ? C17 17F 73 A 1 HETATM 26 C C18 17F . . . XB 4 -24.716 13.6 -12.8 1 10 ? C18 17F 73 A 1 HETATM 27 C C19 17F . . . XB 4 -25.18 13.562 -11.321 1 10 ? C19 17F 73 A 1 HETATM 28 C C20 17F . . . XB 4 -25.28 12.094 -10.76 1 10 ? C20 17F 73 A 1 HETATM 29 C C1X 17F . . . XB 4 -30.674 14.886 -5.129 1 10 ? C1X 17F 73 A 1 HETATM 30 C C1Y 17F . . . XB 4 -25.743 12.1 -9.282 1 10 ? C1Y 17F 73 A 1 HETATM 31 C C1Z 17F . . . XB 4 -24.618 11.619 -8.358 1 10 ? C1Z 17F 73 A 1 HETATM 32 C C2X 17F . . . XB 4 -30.534 15.635 -3.716 1 10 ? C2X 17F 73 A 1 HETATM 33 C C21 17F . . . XB 4 -29.046 15.859 -3.303 1 10 ? C21 17F 73 A 1 HETATM 34 C C22 17F . . . XB 4 -28.584 15.66 -2.113 1 10 ? C22 17F 73 A 1 HETATM 35 C C23 17F . . . XB 4 -29.33 15.194 -0.933 1 10 ? C23 17F 73 A 1 HETATM 36 C C24 17F . . . XB 4 -29.095 16.008 0.336 1 10 ? C24 17F 73 A 1 HETATM 37 C C25 17F . . . XB 4 -29.85 15.557 1.577 1 10 ? C25 17F 73 A 1 HETATM 38 C C26 17F . . . XB 4 -28.946 15.028 2.793 1 10 ? C26 17F 73 A 1 HETATM 39 C C27 17F . . . XB 4 -29.715 14.581 4.015 1 10 ? C27 17F 73 A 1 HETATM 40 C C28 17F . . . XB 4 -28.664 14.106 5.087 1 10 ? C28 17F 73 A 1 HETATM 41 C C29 17F . . . XB 4 -29.111 12.821 5.649 1 10 ? C29 17F 73 A 1 HETATM 42 C C30 17F . . . XB 4 -28.197 12.245 6.69 1 10 ? C30 17F 73 A 1 HETATM 43 C C31 17F . . . XB 4 -24.036 12.67 -7.35 1 10 ? C31 17F 73 A 1 HETATM 44 C C32 17F . . . XB 4 -22.9 12.148 -6.432 1 10 ? C32 17F 73 A 1 HETATM 45 C C33 17F . . . XB 4 -23.516 11.453 -5.223 1 10 ? C33 17F 73 A 1 HETATM 46 C C34 17F . . . XB 4 -22.824 10.891 -4.242 1 10 ? C34 17F 73 A 1 HETATM 47 C C35 17F . . . XB 4 -21.319 10.825 -4.116 1 10 ? C35 17F 73 A 1 HETATM 48 C C36 17F . . . XB 4 -20.683 11.988 -3.297 1 10 ? C36 17F 73 A 1 HETATM 49 C C37 17F . . . XB 4 -19.368 12.336 -3.892 1 10 ? C37 17F 73 A 1 HETATM 50 C C38 17F . . . XB 4 -18.436 13.166 -2.972 1 10 ? C38 17F 73 A 1 HETATM 51 C C39 17F . . . XB 4 -17.096 13.481 -3.663 1 10 ? C39 17F 73 A 1 HETATM 52 C C40 17F . . . XB 4 -16.925 14.997 -3.831 1 10 ? C40 17F 73 A 1 HETATM 53 C C41 17F . . . XB 4 -15.837 15.549 -2.825 1 10 ? C41 17F 73 A 1 HETATM 54 C C42 17F . . . XB 4 -16.238 16.637 -1.819 1 10 ? C42 17F 73 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 111 _model_server_stats.query_time_ms 2814 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #