data_2MSE # _model_server_result.job_id 4a-oqQNXDEsXKzHrW0k9pQ _model_server_result.datetime_utc '2024-12-26 19:35:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2mse # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"YB","auth_seq_id":73}' # _entry.id 2MSE # _exptl.entry_id 2MSE _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 788.043 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 KA N N ? 5 LA N N ? 5 MA N N ? 5 NA N N ? 5 OA N N ? 5 PA N N ? 5 QA N N ? 5 RA N N ? 5 YB N N ? 5 ZB N N ? 5 AC N N ? 5 BC N N ? 5 CC N N ? 5 DC N N ? 5 EC N N ? 5 FC N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id OD1 _struct_conn.ptnr1_label_comp_id ASP _struct_conn.ptnr1_label_seq_id 40 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ASP _struct_conn.ptnr1_auth_seq_id 38 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id HC _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 202 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.751 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C42 H78 N O10 P' _chem_comp.formula_weight 788.043 _chem_comp.id 17F _chem_comp.mon_nstd_flag . _chem_comp.name O-[(S)-({(2R)-2,3-bis[(9Z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-L-serine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1,2-Dioleoyl-sn-glycero-3-phospho-L-serine # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O3 17F sing 1 n n N1 C2 17F sing 2 n n O1 P1 17F doub 3 n n P1 O6 17F sing 4 n n C2 C1 17F sing 5 n n O2 P1 17F sing 6 n n C3 C2 17F sing 7 n n C3 O5 17F sing 8 n n O3 P1 17F sing 9 n n C4 C5 17F sing 10 n n O4 C3 17F doub 11 n n C5 C6 17F sing 12 n n C5 O9 17F sing 13 n n C6 O7 17F sing 14 n n O6 C4 17F sing 15 n n C7 C8 17F sing 16 n n O7 C7 17F sing 17 n n C8 C9 17F sing 18 n n O8 C7 17F doub 19 n n C9 C10 17F sing 20 n n O9 C17 17F sing 21 n n C10 C11 17F sing 22 n n C11 C12 17F sing 23 n n C12 C1X 17F sing 24 n n C17 O10 17F doub 25 n n C17 C18 17F sing 26 n n C18 C19 17F sing 27 n n C19 C20 17F sing 28 n n C20 C1Y 17F sing 29 n n C1Y C1Z 17F sing 30 n n C1X C2X 17F sing 31 n n C2X C21 17F sing 32 n n C21 C22 17F doub 33 z n C22 C23 17F sing 34 n n C23 C24 17F sing 35 n n C24 C25 17F sing 36 n n C25 C26 17F sing 37 n n C26 C27 17F sing 38 n n C27 C28 17F sing 39 n n C28 C29 17F sing 40 n n C29 C30 17F sing 41 n n C1Z C31 17F sing 42 n n C31 C32 17F sing 43 n n C32 C33 17F sing 44 n n C33 C34 17F doub 45 z n C34 C35 17F sing 46 n n C35 C36 17F sing 47 n n C36 C37 17F sing 48 n n C37 C38 17F sing 49 n n C38 C39 17F sing 50 n n C39 C40 17F sing 51 n n C40 C41 17F sing 52 n n C41 C42 17F sing 53 n n C1 H1 17F sing 54 n n C1 H1A 17F sing 55 n n N1 HN1 17F sing 56 n n N1 HN1A 17F sing 57 n n C2 H2 17F sing 58 n n O2 HO2 17F sing 59 n n C4 H4 17F sing 60 n n C4 H4A 17F sing 61 n n C5 H5 17F sing 62 n n O5 HO5 17F sing 63 n n C6 H6 17F sing 64 n n C6 H6A 17F sing 65 n n C8 H8 17F sing 66 n n C8 H8A 17F sing 67 n n C9 H9 17F sing 68 n n C9 H9A 17F sing 69 n n C10 H10 17F sing 70 n n C10 H10A 17F sing 71 n n C11 H11 17F sing 72 n n C11 H11A 17F sing 73 n n C12 H12 17F sing 74 n n C12 H12A 17F sing 75 n n C18 H18 17F sing 76 n n C18 H18A 17F sing 77 n n C19 H19 17F sing 78 n n C19 H19A 17F sing 79 n n C20 H20 17F sing 80 n n C20 H20A 17F sing 81 n n C1X H29 17F sing 82 n n C1X H30 17F sing 83 n n C1Y H31 17F sing 84 n n C1Y H32 17F sing 85 n n C1Z H33 17F sing 86 n n C1Z H34 17F sing 87 n n C2X H35 17F sing 88 n n C2X H36 17F sing 89 n n C21 H37 17F sing 90 n n C22 H38 17F sing 91 n n C23 H39 17F sing 92 n n C23 H40 17F sing 93 n n C24 H41 17F sing 94 n n C24 H42 17F sing 95 n n C25 H43 17F sing 96 n n C25 H44 17F sing 97 n n C26 H45 17F sing 98 n n C26 H46 17F sing 99 n n C27 H47 17F sing 100 n n C27 H48 17F sing 101 n n C28 H49 17F sing 102 n n C28 H50 17F sing 103 n n C29 H51 17F sing 104 n n C29 H52 17F sing 105 n n C30 H53 17F sing 106 n n C30 H54 17F sing 107 n n C30 H55 17F sing 108 n n C31 H56 17F sing 109 n n C31 H57 17F sing 110 n n C32 H58 17F sing 111 n n C32 H59 17F sing 112 n n C33 H60 17F sing 113 n n C34 H61 17F sing 114 n n C35 H62 17F sing 115 n n C35 H63 17F sing 116 n n C36 H64 17F sing 117 n n C36 H65 17F sing 118 n n C37 H66 17F sing 119 n n C37 H67 17F sing 120 n n C38 H68 17F sing 121 n n C38 H69 17F sing 122 n n C39 H70 17F sing 123 n n C39 H71 17F sing 124 n n C40 H72 17F sing 125 n n C40 H73 17F sing 126 n n C41 H74 17F sing 127 n n C41 H75 17F sing 128 n n C42 H76 17F sing 129 n n C42 H77 17F sing 130 n n C42 H78 17F sing 131 n n # _atom_sites.entry_id 2MSE _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PCW A 1 1 1 PCW PCW . F 4 PCW A 1 2 2 PCW PCW . G 4 PCW A 1 3 3 PCW PCW . H 4 PCW A 1 4 4 PCW PCW . I 4 PCW A 1 5 5 PCW PCW . J 4 PCW A 1 6 6 PCW PCW . K 4 PCW A 1 7 7 PCW PCW . L 4 PCW A 1 8 8 PCW PCW . M 4 PCW A 1 9 9 PCW PCW . N 4 PCW A 1 10 10 PCW PCW . O 4 PCW A 1 11 11 PCW PCW . P 4 PCW A 1 12 12 PCW PCW . Q 4 PCW A 1 13 13 PCW PCW . R 4 PCW A 1 14 14 PCW PCW . S 4 PCW A 1 15 15 PCW PCW . T 4 PCW A 1 16 16 PCW PCW . U 4 PCW A 1 17 17 PCW PCW . V 4 PCW A 1 18 18 PCW PCW . W 4 PCW A 1 19 19 PCW PCW . X 4 PCW A 1 20 20 PCW PCW . Y 4 PCW A 1 21 21 PCW PCW . Z 4 PCW A 1 22 22 PCW PCW . AA 4 PCW A 1 23 23 PCW PCW . BA 4 PCW A 1 24 24 PCW PCW . CA 4 PCW A 1 25 25 PCW PCW . DA 4 PCW A 1 26 26 PCW PCW . EA 4 PCW A 1 27 27 PCW PCW . FA 4 PCW A 1 28 28 PCW PCW . GA 4 PCW A 1 29 29 PCW PCW . HA 4 PCW A 1 30 30 PCW PCW . IA 4 PCW A 1 31 31 PCW PCW . JA 4 PCW A 1 32 32 PCW PCW . KA 5 17F A 1 33 33 17F 17F . LA 5 17F A 1 34 34 17F 17F . MA 5 17F A 1 35 35 17F 17F . NA 5 17F A 1 36 36 17F 17F . OA 5 17F A 1 37 37 17F 17F . PA 5 17F A 1 38 38 17F 17F . QA 5 17F A 1 39 39 17F 17F . RA 5 17F A 1 40 40 17F 17F . SA 4 PCW A 1 41 41 PCW PCW . TA 4 PCW A 1 42 42 PCW PCW . UA 4 PCW A 1 43 43 PCW PCW . VA 4 PCW A 1 44 44 PCW PCW . WA 4 PCW A 1 45 45 PCW PCW . XA 4 PCW A 1 46 46 PCW PCW . YA 4 PCW A 1 47 47 PCW PCW . ZA 4 PCW A 1 48 48 PCW PCW . AB 4 PCW A 1 49 49 PCW PCW . BB 4 PCW A 1 50 50 PCW PCW . CB 4 PCW A 1 51 51 PCW PCW . DB 4 PCW A 1 52 52 PCW PCW . EB 4 PCW A 1 53 53 PCW PCW . FB 4 PCW A 1 54 54 PCW PCW . GB 4 PCW A 1 55 55 PCW PCW . HB 4 PCW A 1 56 56 PCW PCW . IB 4 PCW A 1 57 57 PCW PCW . JB 4 PCW A 1 58 58 PCW PCW . KB 4 PCW A 1 59 59 PCW PCW . LB 4 PCW A 1 60 60 PCW PCW . MB 4 PCW A 1 61 61 PCW PCW . NB 4 PCW A 1 62 62 PCW PCW . OB 4 PCW A 1 63 63 PCW PCW . PB 4 PCW A 1 64 64 PCW PCW . QB 4 PCW A 1 65 65 PCW PCW . RB 4 PCW A 1 66 66 PCW PCW . SB 4 PCW A 1 67 67 PCW PCW . TB 4 PCW A 1 68 68 PCW PCW . UB 4 PCW A 1 69 69 PCW PCW . VB 4 PCW A 1 70 70 PCW PCW . WB 4 PCW A 1 71 71 PCW PCW . XB 4 PCW A 1 72 72 PCW PCW . YB 5 17F A 1 73 73 17F 17F . ZB 5 17F A 1 74 74 17F 17F . AC 5 17F A 1 75 75 17F 17F . BC 5 17F A 1 76 76 17F 17F . CC 5 17F A 1 77 77 17F 17F . DC 5 17F A 1 78 78 17F 17F . EC 5 17F A 1 79 79 17F 17F . FC 5 17F A 1 80 80 17F 17F . GC 6 GNP B 1 201 201 GNP GNP . HC 7 MG B 1 202 202 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 17F . . . YB 5 -18.38 -11.519 17.352 1 10 ? C1 17F 73 A 1 HETATM 2 N N1 17F . . . YB 5 -18.097 -10.447 19.593 1 10 ? N1 17F 73 A 1 HETATM 3 O O1 17F . . . YB 5 -21.222 -12.466 17.165 1 10 ? O1 17F 73 A 1 HETATM 4 P P1 17F . . . YB 5 -20.064 -13.415 17.373 1 10 ? P1 17F 73 A 1 HETATM 5 C C2 17F . . . YB 5 -17.454 -10.782 18.331 1 10 ? C2 17F 73 A 1 HETATM 6 O O2 17F . . . YB 5 -20.313 -14.58 18.293 1 10 ? O2 17F 73 A 1 HETATM 7 C C3 17F . . . YB 5 -16.915 -9.5 17.674 1 10 ? C3 17F 73 A 1 HETATM 8 O O3 17F . . . YB 5 -18.792 -12.72 17.91 1 10 ? O3 17F 73 A 1 HETATM 9 C C4 17F . . . YB 5 -18.502 -14.997 15.959 1 10 ? C4 17F 73 A 1 HETATM 10 O O4 17F . . . YB 5 -17.05 -8.34 18.219 1 10 ? O4 17F 73 A 1 HETATM 11 C C5 17F . . . YB 5 -18.182 -15.53 14.525 1 10 ? C5 17F 73 A 1 HETATM 12 O O5 17F . . . YB 5 -16.33 -9.54 16.594 1 10 ? O5 17F 73 A 1 HETATM 13 C C6 17F . . . YB 5 -19.197 -14.953 13.503 1 10 ? C6 17F 73 A 1 HETATM 14 O O6 17F . . . YB 5 -19.586 -14.066 16.007 1 10 ? O6 17F 73 A 1 HETATM 15 C C7 17F . . . YB 5 -18.577 -14.564 11.279 1 10 ? C7 17F 73 A 1 HETATM 16 O O7 17F . . . YB 5 -18.944 -15.416 12.184 1 10 ? O7 17F 73 A 1 HETATM 17 C C8 17F . . . YB 5 -18.384 -15.336 9.95 1 10 ? C8 17F 73 A 1 HETATM 18 O O8 17F . . . YB 5 -18.394 -13.376 11.348 1 10 ? O8 17F 73 A 1 HETATM 19 C C9 17F . . . YB 5 -19.724 -15.666 9.246 1 10 ? C9 17F 73 A 1 HETATM 20 O O9 17F . . . YB 5 -16.834 -15.263 14.123 1 10 ? O9 17F 73 A 1 HETATM 21 C C10 17F . . . YB 5 -19.611 -16.452 7.887 1 10 ? C10 17F 73 A 1 HETATM 22 O O10 17F . . . YB 5 -15.673 -17.069 14.944 1 10 ? O10 17F 73 A 1 HETATM 23 C C11 17F . . . YB 5 -20.847 -17.376 7.562 1 10 ? C11 17F 73 A 1 HETATM 24 C C12 17F . . . YB 5 -20.675 -18.129 6.19 1 10 ? C12 17F 73 A 1 HETATM 25 C C17 17F . . . YB 5 -16.119 -16.363 14.033 1 10 ? C17 17F 73 A 1 HETATM 26 C C18 17F . . . YB 5 -15.834 -16.749 12.595 1 10 ? C18 17F 73 A 1 HETATM 27 C C19 17F . . . YB 5 -16.571 -18.02 12.109 1 10 ? C19 17F 73 A 1 HETATM 28 C C20 17F . . . YB 5 -15.858 -18.688 10.874 1 10 ? C20 17F 73 A 1 HETATM 29 C C1X 17F . . . YB 5 -21.899 -19.014 5.912 1 10 ? C1X 17F 73 A 1 HETATM 30 C C1Y 17F . . . YB 5 -16.625 -19.953 10.416 1 10 ? C1Y 17F 73 A 1 HETATM 31 C C1Z 17F . . . YB 5 -16.133 -20.416 9.039 1 10 ? C1Z 17F 73 A 1 HETATM 32 C C2X 17F . . . YB 5 -21.778 -19.802 4.521 1 10 ? C2X 17F 73 A 1 HETATM 33 C C21 17F . . . YB 5 -20.833 -21.041 4.615 1 10 ? C21 17F 73 A 1 HETATM 34 C C22 17F . . . YB 5 -20.569 -21.837 3.632 1 10 ? C22 17F 73 A 1 HETATM 35 C C23 17F . . . YB 5 -21.074 -21.757 2.253 1 10 ? C23 17F 73 A 1 HETATM 36 C C24 17F . . . YB 5 -20.119 -22.31 1.203 1 10 ? C24 17F 73 A 1 HETATM 37 C C25 17F . . . YB 5 -20.583 -22.257 -0.243 1 10 ? C25 17F 73 A 1 HETATM 38 C C26 17F . . . YB 5 -19.784 -21.24 -1.192 1 10 ? C26 17F 73 A 1 HETATM 39 C C27 17F . . . YB 5 -20.258 -21.201 -2.626 1 10 ? C27 17F 73 A 1 HETATM 40 C C28 17F . . . YB 5 -19.363 -20.157 -3.399 1 10 ? C28 17F 73 A 1 HETATM 41 C C29 17F . . . YB 5 -20.154 -19.59 -4.509 1 10 ? C29 17F 73 A 1 HETATM 42 C C30 17F . . . YB 5 -19.43 -18.574 -5.344 1 10 ? C30 17F 73 A 1 HETATM 43 C C31 17F . . . YB 5 -16.574 -19.557 7.801 1 10 ? C31 17F 73 A 1 HETATM 44 C C32 17F . . . YB 5 -16.059 -20.055 6.423 1 10 ? C32 17F 73 A 1 HETATM 45 C C33 17F . . . YB 5 -15.047 -19.054 5.874 1 10 ? C33 17F 73 A 1 HETATM 46 C C34 17F . . . YB 5 -14.408 -19.176 4.717 1 10 ? C34 17F 73 A 1 HETATM 47 C C35 17F . . . YB 5 -14.548 -20.299 3.718 1 10 ? C35 17F 73 A 1 HETATM 48 C C36 17F . . . YB 5 -14.296 -19.883 2.239 1 10 ? C36 17F 73 A 1 HETATM 49 C C37 17F . . . YB 5 -12.846 -20.002 1.946 1 10 ? C37 17F 73 A 1 HETATM 50 C C38 17F . . . YB 5 -12.407 -21.382 1.39 1 10 ? C38 17F 73 A 1 HETATM 51 C C39 17F . . . YB 5 -10.894 -21.42 1.114 1 10 ? C39 17F 73 A 1 HETATM 52 C C40 17F . . . YB 5 -10.288 -22.727 1.64 1 10 ? C40 17F 73 A 1 HETATM 53 C C41 17F . . . YB 5 -9.05 -22.434 2.58 1 10 ? C41 17F 73 A 1 HETATM 54 C C42 17F . . . YB 5 -7.67 -22.973 2.18 1 10 ? C42 17F 73 A 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 112 _model_server_stats.query_time_ms 3073 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 54 #