data_2MYD # _model_server_result.job_id -41KgkoTzgs0S90jKBsOPw _model_server_result.datetime_utc '2024-11-27 15:12:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2myd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":156}' # _entry.id 2MYD # _exptl.entry_id 2MYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.08 _cell.angle_gamma 90 _cell.entry_id 2MYD _cell.length_a 64.64 _cell.length_b 30.95 _cell.length_c 34.95 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2MYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 C FE HEM . A HEM 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc2 C FE HEM . A HEM 154 1_555 D C NPN . A NPN 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.883 ? metalc ? metalc3 C FE HEM . A HEM 154 1_555 D C NPN . A NPN 155 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.891 ? metalc ? metalc4 C FE HEM . A HEM 154 1_555 D N NPN . A NPN 155 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.772 ? metalc ? metalc5 C FE HEM . A HEM 154 1_555 D N NPN . A NPN 155 1_555 ? ? ? ? A ? ? ? ? ? ? ? 3.057 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 370 n n S O2 SO4 doub 371 n n S O3 SO4 sing 372 n n S O4 SO4 sing 373 n n # _atom_sites.entry_id 2MYD _atom_sites.fract_transf_matrix[1][1] 0.01547 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004459 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.03231 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.029777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 156 156 SO4 SO4 . C 3 HEM A 1 154 154 HEM HEM . D 4 NPN A 1 155 155 NPN NPN . E 5 HOH A 1 158 158 HOH HOH . E 5 HOH A 2 159 159 HOH HOH . E 5 HOH A 3 160 160 HOH HOH . E 5 HOH A 4 161 161 HOH HOH . E 5 HOH A 5 162 162 HOH HOH . E 5 HOH A 6 163 163 HOH HOH . E 5 HOH A 7 164 164 HOH HOH . E 5 HOH A 8 165 165 HOH HOH . E 5 HOH A 9 167 167 HOH HOH . E 5 HOH A 10 168 168 HOH HOH . E 5 HOH A 11 172 172 HOH HOH . E 5 HOH A 12 173 173 HOH HOH . E 5 HOH A 13 175 175 HOH HOH . E 5 HOH A 14 177 177 HOH HOH . E 5 HOH A 15 178 178 HOH HOH . E 5 HOH A 16 181 181 HOH HOH . E 5 HOH A 17 185 185 HOH HOH . E 5 HOH A 18 186 186 HOH HOH . E 5 HOH A 19 187 187 HOH HOH . E 5 HOH A 20 190 190 HOH HOH . E 5 HOH A 21 193 193 HOH HOH . E 5 HOH A 22 194 194 HOH HOH . E 5 HOH A 23 195 195 HOH HOH . E 5 HOH A 24 196 196 HOH HOH . E 5 HOH A 25 197 197 HOH HOH . E 5 HOH A 26 200 200 HOH HOH . E 5 HOH A 27 201 201 HOH HOH . E 5 HOH A 28 202 202 HOH HOH . E 5 HOH A 29 205 205 HOH HOH . E 5 HOH A 30 207 207 HOH HOH . E 5 HOH A 31 208 208 HOH HOH . E 5 HOH A 32 209 209 HOH HOH . E 5 HOH A 33 210 210 HOH HOH . E 5 HOH A 34 213 213 HOH HOH . E 5 HOH A 35 215 215 HOH HOH . E 5 HOH A 36 216 216 HOH HOH . E 5 HOH A 37 218 218 HOH HOH . E 5 HOH A 38 227 227 HOH HOH . E 5 HOH A 39 228 228 HOH HOH . E 5 HOH A 40 229 229 HOH HOH . E 5 HOH A 41 234 234 HOH HOH . E 5 HOH A 42 235 235 HOH HOH . E 5 HOH A 43 236 236 HOH HOH . E 5 HOH A 44 237 237 HOH HOH . E 5 HOH A 45 240 240 HOH HOH . E 5 HOH A 46 255 255 HOH HOH . E 5 HOH A 47 257 257 HOH HOH . E 5 HOH A 48 258 258 HOH HOH . E 5 HOH A 49 259 259 HOH HOH . E 5 HOH A 50 261 261 HOH HOH . E 5 HOH A 51 265 265 HOH HOH . E 5 HOH A 52 266 266 HOH HOH . E 5 HOH A 53 267 267 HOH HOH . E 5 HOH A 54 268 268 HOH HOH . E 5 HOH A 55 270 270 HOH HOH . E 5 HOH A 56 271 271 HOH HOH . E 5 HOH A 57 273 273 HOH HOH . E 5 HOH A 58 276 276 HOH HOH . E 5 HOH A 59 277 277 HOH HOH . E 5 HOH A 60 278 278 HOH HOH . E 5 HOH A 61 282 282 HOH HOH . E 5 HOH A 62 284 284 HOH HOH . E 5 HOH A 63 285 285 HOH HOH . E 5 HOH A 64 286 286 HOH HOH . E 5 HOH A 65 287 287 HOH HOH . E 5 HOH A 66 289 289 HOH HOH . E 5 HOH A 67 290 290 HOH HOH . E 5 HOH A 68 291 291 HOH HOH . E 5 HOH A 69 292 292 HOH HOH . E 5 HOH A 70 295 295 HOH HOH . E 5 HOH A 71 296 296 HOH HOH . E 5 HOH A 72 297 297 HOH HOH . E 5 HOH A 73 298 298 HOH HOH . E 5 HOH A 74 299 299 HOH HOH . E 5 HOH A 75 300 300 HOH HOH . E 5 HOH A 76 301 301 HOH HOH . E 5 HOH A 77 305 305 HOH HOH . E 5 HOH A 78 307 307 HOH HOH . E 5 HOH A 79 309 309 HOH HOH . E 5 HOH A 80 311 311 HOH HOH . E 5 HOH A 81 314 314 HOH HOH . E 5 HOH A 82 317 317 HOH HOH . E 5 HOH A 83 323 323 HOH HOH . E 5 HOH A 84 325 325 HOH HOH . E 5 HOH A 85 326 326 HOH HOH . E 5 HOH A 86 327 327 HOH HOH . E 5 HOH A 87 338 338 HOH HOH . E 5 HOH A 88 350 350 HOH HOH . E 5 HOH A 89 361 361 HOH HOH . E 5 HOH A 90 362 362 HOH HOH . E 5 HOH A 91 368 368 HOH HOH . E 5 HOH A 92 371 371 HOH HOH . E 5 HOH A 93 372 372 HOH HOH . E 5 HOH A 94 373 373 HOH HOH . E 5 HOH A 95 380 380 HOH HOH . E 5 HOH A 96 382 382 HOH HOH . E 5 HOH A 97 389 389 HOH HOH . E 5 HOH A 98 392 392 HOH HOH . E 5 HOH A 99 397 397 HOH HOH . E 5 HOH A 100 402 402 HOH HOH . E 5 HOH A 101 403 403 HOH HOH . E 5 HOH A 102 407 407 HOH HOH . E 5 HOH A 103 408 408 HOH HOH . E 5 HOH A 104 409 409 HOH HOH . E 5 HOH A 105 413 413 HOH HOH . E 5 HOH A 106 414 414 HOH HOH . E 5 HOH A 107 415 415 HOH HOH . E 5 HOH A 108 416 416 HOH HOH . E 5 HOH A 109 418 418 HOH HOH . E 5 HOH A 110 419 419 HOH HOH . E 5 HOH A 111 424 424 HOH HOH . E 5 HOH A 112 427 427 HOH HOH . E 5 HOH A 113 430 430 HOH HOH . E 5 HOH A 114 432 432 HOH HOH . E 5 HOH A 115 435 435 HOH HOH . E 5 HOH A 116 444 444 HOH HOH . E 5 HOH A 117 449 449 HOH HOH . E 5 HOH A 118 451 451 HOH HOH . E 5 HOH A 119 452 452 HOH HOH . E 5 HOH A 120 454 454 HOH HOH . E 5 HOH A 121 461 461 HOH HOH . E 5 HOH A 122 463 463 HOH HOH . E 5 HOH A 123 464 464 HOH HOH . E 5 HOH A 124 467 467 HOH HOH . E 5 HOH A 125 468 468 HOH HOH . E 5 HOH A 126 471 471 HOH HOH . E 5 HOH A 127 475 475 HOH HOH . E 5 HOH A 128 479 479 HOH HOH . E 5 HOH A 129 480 480 HOH HOH . E 5 HOH A 130 482 482 HOH HOH . E 5 HOH A 131 493 493 HOH HOH . E 5 HOH A 132 495 495 HOH HOH . E 5 HOH A 133 498 498 HOH HOH . E 5 HOH A 134 525 525 HOH HOH . E 5 HOH A 135 526 526 HOH HOH . E 5 HOH A 136 527 527 HOH HOH . E 5 HOH A 137 533 533 HOH HOH . E 5 HOH A 138 545 545 HOH HOH . E 5 HOH A 139 549 549 HOH HOH . E 5 HOH A 140 551 551 HOH HOH . E 5 HOH A 141 569 569 HOH HOH . E 5 HOH A 142 577 577 HOH HOH . E 5 HOH A 143 585 585 HOH HOH . E 5 HOH A 144 586 586 HOH HOH . E 5 HOH A 145 592 592 HOH HOH . E 5 HOH A 146 603 603 HOH HOH . E 5 HOH A 147 604 604 HOH HOH . E 5 HOH A 148 613 613 HOH HOH . E 5 HOH A 149 615 615 HOH HOH . E 5 HOH A 150 616 616 HOH HOH . E 5 HOH A 151 624 624 HOH HOH . E 5 HOH A 152 630 630 HOH HOH . E 5 HOH A 153 644 644 HOH HOH . E 5 HOH A 154 652 652 HOH HOH . E 5 HOH A 155 662 662 HOH HOH . E 5 HOH A 156 664 664 HOH HOH . E 5 HOH A 157 674 674 HOH HOH . E 5 HOH A 158 688 688 HOH HOH . E 5 HOH A 159 715 715 HOH HOH . E 5 HOH A 160 770 770 HOH HOH . E 5 HOH A 161 785 785 HOH HOH . E 5 HOH A 162 805 805 HOH HOH . E 5 HOH A 163 820 820 HOH HOH . E 5 HOH A 164 835 835 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . B 2 32.809 29.658 4.342 0.97 17.47 ? S SO4 156 A 1 HETATM 2 O O1 SO4 . . . B 2 31.962 29.122 3.381 0.97 17.79 ? O1 SO4 156 A 1 HETATM 3 O O2 SO4 . . . B 2 33.657 28.625 4.844 0.97 17.9 ? O2 SO4 156 A 1 HETATM 4 O O3 SO4 . . . B 2 33.582 30.616 3.722 0.97 18.69 ? O3 SO4 156 A 1 HETATM 5 O O4 SO4 . . . B 2 32.045 30.213 5.426 0.97 15.17 ? O4 SO4 156 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #