data_2N18 # _model_server_result.job_id C2EdeS5X7ijo0118dTgFOg _model_server_result.datetime_utc '2024-12-23 03:05:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2n18 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 2N18 # _exptl.entry_id 2N18 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 616.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2N18 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2N18 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 197 A CYS 197 1_555 B SG CYS 86 B CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc1 A NE2 HIS 175 A HIS 175 1_555 D FE HEM . A HEM 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc2 B NE2 HIS 23 B HIS 18 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc3 B SD MET 85 B MET 80 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc4 C NE2 HIS 23 C HIS 18 1_555 F FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? metalc ? metalc5 C SD MET 85 C MET 80 1_555 F FE HEC . C HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.206 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 213 n n CHA C4D HEM doub 214 n n CHA HHA HEM sing 215 n n CHB C4A HEM sing 216 n n CHB C1B HEM doub 217 n n CHB HHB HEM sing 218 n n CHC C4B HEM sing 219 n n CHC C1C HEM doub 220 n n CHC HHC HEM sing 221 n n CHD C4C HEM doub 222 n n CHD C1D HEM sing 223 n n CHD HHD HEM sing 224 n n C1A C2A HEM doub 225 n y C1A NA HEM sing 226 n y C2A C3A HEM sing 227 n y C2A CAA HEM sing 228 n n C3A C4A HEM doub 229 n y C3A CMA HEM sing 230 n n C4A NA HEM sing 231 n y CMA HMA HEM sing 232 n n CMA HMAA HEM sing 233 n n CMA HMAB HEM sing 234 n n CAA CBA HEM sing 235 n n CAA HAA HEM sing 236 n n CAA HAAA HEM sing 237 n n CBA CGA HEM sing 238 n n CBA HBA HEM sing 239 n n CBA HBAA HEM sing 240 n n CGA O1A HEM doub 241 n n CGA O2A HEM sing 242 n n C1B C2B HEM sing 243 n n C1B NB HEM sing 244 n n C2B C3B HEM doub 245 n n C2B CMB HEM sing 246 n n C3B C4B HEM sing 247 n n C3B CAB HEM sing 248 n n C4B NB HEM doub 249 n n CMB HMB HEM sing 250 n n CMB HMBA HEM sing 251 n n CMB HMBB HEM sing 252 n n CAB CBB HEM doub 253 n n CAB HAB HEM sing 254 n n CBB HBB HEM sing 255 n n CBB HBBA HEM sing 256 n n C1C C2C HEM sing 257 n y C1C NC HEM sing 258 n y C2C C3C HEM doub 259 n y C2C CMC HEM sing 260 n n C3C C4C HEM sing 261 n y C3C CAC HEM sing 262 n n C4C NC HEM sing 263 n y CMC HMC HEM sing 264 n n CMC HMCA HEM sing 265 n n CMC HMCB HEM sing 266 n n CAC CBC HEM doub 267 n n CAC HAC HEM sing 268 n n CBC HBC HEM sing 269 n n CBC HBCA HEM sing 270 n n C1D C2D HEM sing 271 n n C1D ND HEM doub 272 n n C2D C3D HEM doub 273 n n C2D CMD HEM sing 274 n n C3D C4D HEM sing 275 n n C3D CAD HEM sing 276 n n C4D ND HEM sing 277 n n CMD HMD HEM sing 278 n n CMD HMDA HEM sing 279 n n CMD HMDB HEM sing 280 n n CAD CBD HEM sing 281 n n CAD HAD HEM sing 282 n n CAD HADA HEM sing 283 n n CBD CGD HEM sing 284 n n CBD HBD HEM sing 285 n n CBD HBDA HEM sing 286 n n CGD O1D HEM doub 287 n n CGD O2D HEM sing 288 n n O2A H2A HEM sing 289 n n O2D H2D HEM sing 290 n n FE NA HEM sing 291 n n FE NB HEM sing 292 n n FE NC HEM sing 293 n n FE ND HEM sing 294 n n # _atom_sites.entry_id 2N18 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HEM A 1 301 295 HEM HEM . E 5 HEC B 1 201 104 HEC HEC . F 5 HEC C 1 201 104 HEC HEC . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 4 23.224 59.853 1.773 1 13.02 ? CHA HEM 301 A 1 HETATM 2 C CHB HEM . . . D 4 22.365 59.793 -3.058 1 14.02 ? CHB HEM 301 A 1 HETATM 3 C CHC HEM . . . D 4 17.675 60.538 -2.179 1 15.17 ? CHC HEM 301 A 1 HETATM 4 C CHD HEM . . . D 4 18.54 60.259 2.655 1 14.15 ? CHD HEM 301 A 1 HETATM 5 C C1A HEM . . . D 4 23.378 59.72 0.362 1 14.2 ? C1A HEM 301 A 1 HETATM 6 C C2A HEM . . . D 4 24.627 59.509 -0.304 1 12.56 ? C2A HEM 301 A 1 HETATM 7 C C3A HEM . . . D 4 24.409 59.432 -1.674 1 14.95 ? C3A HEM 301 A 1 HETATM 8 C C4A HEM . . . D 4 23.005 59.691 -1.799 1 15.36 ? C4A HEM 301 A 1 HETATM 9 C CMA HEM . . . D 4 25.475 59.301 -2.825 1 10.28 ? CMA HEM 301 A 1 HETATM 10 C CAA HEM . . . D 4 25.971 59.35 0.421 1 11.4 ? CAA HEM 301 A 1 HETATM 11 C CBA HEM . . . D 4 26.106 57.943 1.013 1 13.8 ? CBA HEM 301 A 1 HETATM 12 C CGA HEM . . . D 4 27.482 57.711 1.667 1 14.34 ? CGA HEM 301 A 1 HETATM 13 O O1A HEM . . . D 4 28.508 57.903 0.98 1 17.03 ? O1A HEM 301 A 1 HETATM 14 O O2A HEM . . . D 4 27.525 57.349 2.861 1 16.75 ? O2A HEM 301 A 1 HETATM 15 C C1B HEM . . . D 4 21.033 60.055 -3.204 1 15.86 ? C1B HEM 301 A 1 HETATM 16 C C2B HEM . . . D 4 20.356 60.25 -4.531 1 13.2 ? C2B HEM 301 A 1 HETATM 17 C C3B HEM . . . D 4 19.047 60.492 -4.272 1 16.43 ? C3B HEM 301 A 1 HETATM 18 C C4B HEM . . . D 4 18.895 60.408 -2.811 1 15.1 ? C4B HEM 301 A 1 HETATM 19 C CMB HEM . . . D 4 21.035 60.103 -5.897 1 12.97 ? CMB HEM 301 A 1 HETATM 20 C CAB HEM . . . D 4 17.971 60.788 -5.175 1 15.31 ? CAB HEM 301 A 1 HETATM 21 C CBB HEM . . . D 4 18.163 61.588 -6.373 1 18.07 ? CBB HEM 301 A 1 HETATM 22 C C1C HEM . . . D 4 17.526 60.511 -0.762 1 15.72 ? C1C HEM 301 A 1 HETATM 23 C C2C HEM . . . D 4 16.253 60.568 -0.132 1 12.67 ? C2C HEM 301 A 1 HETATM 24 C C3C HEM . . . D 4 16.45 60.409 1.203 1 15.58 ? C3C HEM 301 A 1 HETATM 25 C C4C HEM . . . D 4 17.897 60.34 1.358 1 16.16 ? C4C HEM 301 A 1 HETATM 26 C CMC HEM . . . D 4 14.91 60.633 -0.833 1 12.13 ? CMC HEM 301 A 1 HETATM 27 C CAC HEM . . . D 4 15.572 60.26 2.278 1 12.65 ? CAC HEM 301 A 1 HETATM 28 C CBC HEM . . . D 4 14.288 60.818 2.391 1 16.45 ? CBC HEM 301 A 1 HETATM 29 C C1D HEM . . . D 4 19.929 60.263 2.795 1 13.49 ? C1D HEM 301 A 1 HETATM 30 C C2D HEM . . . D 4 20.613 60.378 4.09 1 16.55 ? C2D HEM 301 A 1 HETATM 31 C C3D HEM . . . D 4 21.902 60.287 3.836 1 14.63 ? C3D HEM 301 A 1 HETATM 32 C C4D HEM . . . D 4 22.015 60.104 2.413 1 15.65 ? C4D HEM 301 A 1 HETATM 33 C CMD HEM . . . D 4 19.941 60.829 5.409 1 18.28 ? CMD HEM 301 A 1 HETATM 34 C CAD HEM . . . D 4 23.093 60.485 4.829 1 18.21 ? CAD HEM 301 A 1 HETATM 35 C CBD HEM . . . D 4 23.561 59.061 5.225 1 13.92 ? CBD HEM 301 A 1 HETATM 36 C CGD HEM . . . D 4 24.721 59.054 6.257 1 13.26 ? CGD HEM 301 A 1 HETATM 37 O O1D HEM . . . D 4 25.165 57.939 6.594 1 18.39 ? O1D HEM 301 A 1 HETATM 38 O O2D HEM . . . D 4 25.181 60.127 6.703 1 13.54 ? O2D HEM 301 A 1 HETATM 39 N NA HEM . . . D 4 22.379 59.887 -0.56 1 13.04 ? NA HEM 301 A 1 HETATM 40 N NB HEM . . . D 4 20.134 60.258 -2.139 1 15.89 ? NB HEM 301 A 1 HETATM 41 N NC HEM . . . D 4 18.522 60.396 0.125 1 13.74 ? NC HEM 301 A 1 HETATM 42 N ND HEM . . . D 4 20.788 60.174 1.784 1 14.03 ? ND HEM 301 A 1 HETATM 43 FE FE HEM . . . D 4 20.482 60.386 -0.176 1 15.13 ? FE HEM 301 A 1 HETATM 44 H HHB HEM . . . D 4 22.961 59.656 -3.948 1 0 ? HHB HEM 301 A 1 HETATM 45 H HHC HEM . . . D 4 16.791 60.667 -2.785 1 0 ? HHC HEM 301 A 1 HETATM 46 H HHD HEM . . . D 4 17.928 60.194 3.542 1 0 ? HHD HEM 301 A 1 HETATM 47 H HMA HEM . . . D 4 25.33 60.095 -3.542 1 0 ? HMA HEM 301 A 1 HETATM 48 H HMAA HEM . . . D 4 25.358 58.346 -3.317 1 0 ? HMAA HEM 301 A 1 HETATM 49 H HMAB HEM . . . D 4 26.468 59.371 -2.407 1 0 ? HMAB HEM 301 A 1 HETATM 50 H HAA HEM . . . D 4 26.033 60.077 1.217 1 0 ? HAA HEM 301 A 1 HETATM 51 H HAAA HEM . . . D 4 26.776 59.52 -0.279 1 0 ? HAAA HEM 301 A 1 HETATM 52 H HBA HEM . . . D 4 25.968 57.217 0.225 1 0 ? HBA HEM 301 A 1 HETATM 53 H HBAA HEM . . . D 4 25.336 57.801 1.758 1 0 ? HBAA HEM 301 A 1 HETATM 54 H HMB HEM . . . D 4 21.411 61.063 -6.217 1 0 ? HMB HEM 301 A 1 HETATM 55 H HMBA HEM . . . D 4 20.32 59.738 -6.619 1 0 ? HMBA HEM 301 A 1 HETATM 56 H HMBB HEM . . . D 4 21.854 59.404 -5.82 1 0 ? HMBB HEM 301 A 1 HETATM 57 H HAB HEM . . . D 4 16.98 60.804 -4.777 1 0 ? HAB HEM 301 A 1 HETATM 58 H HBB HEM . . . D 4 19.133 61.632 -6.845 1 0 ? HBB HEM 301 A 1 HETATM 59 H HBBA HEM . . . D 4 17.334 62.139 -6.792 1 0 ? HBBA HEM 301 A 1 HETATM 60 H HMC HEM . . . D 4 14.592 61.662 -0.905 1 0 ? HMC HEM 301 A 1 HETATM 61 H HMCA HEM . . . D 4 14.181 60.069 -0.271 1 0 ? HMCA HEM 301 A 1 HETATM 62 H HMCB HEM . . . D 4 14.999 60.215 -1.824 1 0 ? HMCB HEM 301 A 1 HETATM 63 H HAC HEM . . . D 4 16.009 59.96 3.21 1 0 ? HAC HEM 301 A 1 HETATM 64 H HBC HEM . . . D 4 13.764 61.153 1.509 1 0 ? HBC HEM 301 A 1 HETATM 65 H HBCA HEM . . . D 4 13.825 60.912 3.362 1 0 ? HBCA HEM 301 A 1 HETATM 66 H HMD HEM . . . D 4 19.185 60.111 5.691 1 0 ? HMD HEM 301 A 1 HETATM 67 H HMDA HEM . . . D 4 19.483 61.797 5.267 1 0 ? HMDA HEM 301 A 1 HETATM 68 H HMDB HEM . . . D 4 20.684 60.894 6.19 1 0 ? HMDB HEM 301 A 1 HETATM 69 H HAD HEM . . . D 4 22.763 61.025 5.704 1 0 ? HAD HEM 301 A 1 HETATM 70 H HADA HEM . . . D 4 23.897 61.019 4.345 1 0 ? HADA HEM 301 A 1 HETATM 71 H HBD HEM . . . D 4 23.889 58.545 4.335 1 0 ? HBD HEM 301 A 1 HETATM 72 H HBDA HEM . . . D 4 22.722 58.526 5.646 1 0 ? HBDA HEM 301 A 1 HETATM 73 H HHA HEM . . . D 4 24.107 59.752 2.387 1 0 ? HHA HEM 301 A 1 # _model_server_stats.io_time_ms 41 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 444 _model_server_stats.query_time_ms 4327 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 73 #