data_2NC5 # _model_server_result.job_id L3Ni-ZXtAxA2nUDTCWS75w _model_server_result.datetime_utc '2025-07-07 09:04:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nc5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":101}' # _entry.id 2NC5 # _exptl.entry_id 2NC5 _exptl.method 'SOLUTION NMR' # _entity.details ? _entity.formula_weight 150.13 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description beta-D-xylopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND2 _struct_conn.ptnr1_label_comp_id ASN _struct_conn.ptnr1_label_seq_id 13 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ASN _struct_conn.ptnr1_auth_seq_id 13 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id XYP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XYP _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.456 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C5 H10 O5' _chem_comp.formula_weight 150.13 _chem_comp.id XYP _chem_comp.mon_nstd_flag . _chem_comp.name beta-D-xylopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms beta-D-xylose;D-xylose;xylose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 XYP sing 346 n n O1 HO1 XYP sing 347 n n C1 C2 XYP sing 348 n n C1 O5 XYP sing 349 n n C1 H1 XYP sing 350 n n C2 C3 XYP sing 351 n n C2 O2 XYP sing 352 n n C2 H2 XYP sing 353 n n C3 C4 XYP sing 354 n n C3 O3 XYP sing 355 n n C3 H3 XYP sing 356 n n C4 C5 XYP sing 357 n n C4 O4 XYP sing 358 n n C4 H4 XYP sing 359 n n C5 O5 XYP sing 360 n n C5 H51 XYP sing 361 n n C5 H52 XYP sing 362 n n O2 HO2 XYP sing 363 n n O3 HO3 XYP sing 364 n n O4 HO4 XYP sing 365 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version XYP DXylpb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 XYP b-D-xylopyranose 'COMMON NAME' GMML 1 XYP b-D-Xylp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 XYP Xyl 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 2NC5 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id XYP _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 34 _pdbx_nonpoly_scheme.pdb_mon_id XYP _pdbx_nonpoly_scheme.auth_mon_id XYP _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 XYP . . . B 2 13.764 1.831 1.286 1 0 ? C1 XYP 101 A 1 HETATM 2 C C2 XYP . . . B 2 14.516 2.989 0.585 1 0 ? C2 XYP 101 A 1 HETATM 3 C C3 XYP . . . B 2 13.706 3.484 -0.628 1 0 ? C3 XYP 101 A 1 HETATM 4 C C4 XYP . . . B 2 13.373 2.313 -1.571 1 0 ? C4 XYP 101 A 1 HETATM 5 C C5 XYP . . . B 2 12.686 1.161 -0.817 1 0 ? C5 XYP 101 A 1 HETATM 6 O O2 XYP . . . B 2 14.7 4.085 1.517 1 0 ? O2 XYP 101 A 1 HETATM 7 O O3 XYP . . . B 2 14.464 4.495 -1.363 1 0 ? O3 XYP 101 A 1 HETATM 8 O O4 XYP . . . B 2 12.488 2.8 -2.613 1 0 ? O4 XYP 101 A 1 HETATM 9 O O5 XYP . . . B 2 13.525 0.747 0.33 1 0 ? O5 XYP 101 A 1 HETATM 10 H H1 XYP . . . B 2 12.805 2.184 1.664 1 0 ? H1 XYP 101 A 1 HETATM 11 H H2 XYP . . . B 2 15.494 2.639 0.252 1 0 ? H2 XYP 101 A 1 HETATM 12 H H3 XYP . . . B 2 12.777 3.934 -0.274 1 0 ? H3 XYP 101 A 1 HETATM 13 H H4 XYP . . . B 2 14.29 1.941 -2.03 1 0 ? H4 XYP 101 A 1 HETATM 14 H H51 XYP . . . B 2 12.545 0.31 -1.484 1 0 ? H51 XYP 101 A 1 HETATM 15 H H52 XYP . . . B 2 11.709 1.483 -0.446 1 0 ? H52 XYP 101 A 1 HETATM 16 H HO2 XYP . . . B 2 15.012 4.844 1.005 1 0 ? HO2 XYP 101 A 1 HETATM 17 H HO3 XYP . . . B 2 15.285 4.115 -1.714 1 0 ? HO3 XYP 101 A 1 HETATM 18 H HO4 XYP . . . B 2 12.87 3.621 -2.961 1 0 ? HO4 XYP 101 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 6523 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 18 #