data_2NG1
#
_model_server_result.job_id            yVo0sLKXVnJZfyGQfTBrFg 
_model_server_result.datetime_utc      '2024-10-12 12:22:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2ng1 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":800}' 
#
_entry.id    2NG1 
#
_exptl.entry_id    2NG1 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          119.62 
_cell.angle_gamma         90 
_cell.entry_id            2NG1 
_cell.length_a            110.425 
_cell.length_b            54.214 
_cell.length_c            58.465 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NG1 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 70 n n 
C1 O1 DIO sing 71 n n 
C1 H11 DIO sing 72 n n 
C1 H12 DIO sing 73 n n 
C2 C2' DIO sing 74 n n 
C2 O1 DIO sing 75 n n 
C2 H21 DIO sing 76 n n 
C2 H22 DIO sing 77 n n 
C1' O1' DIO sing 78 n n 
C1' "H1'1" DIO sing 79 n n 
C1' "H1'2" DIO sing 80 n n 
C2' O1' DIO sing 81 n n 
C2' "H2'1" DIO sing 82 n n 
C2' "H2'2" DIO sing 83 n n 
#
_atom_sites.entry_id                     2NG1 
_atom_sites.fract_transf_matrix[1][1]    0.009056 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005149 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019675 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GDP A 1 900 900 GDP GDP . 
C 3 DIO A 1 800 800 DIO DOX . 
D 4 EDO A 1 971 971 EDO EDO . 
E 4 EDO A 1 973 973 EDO EDO . 
F 5 HOH A 1 974 1 HOH HOH . 
F 5 HOH A 2 975 2 HOH HOH . 
F 5 HOH A 3 976 3 HOH HOH . 
F 5 HOH A 4 977 4 HOH HOH . 
F 5 HOH A 5 978 5 HOH HOH . 
F 5 HOH A 6 979 7 HOH HOH . 
F 5 HOH A 7 980 8 HOH HOH . 
F 5 HOH A 8 981 9 HOH HOH . 
F 5 HOH A 9 982 10 HOH HOH . 
F 5 HOH A 10 983 11 HOH HOH . 
F 5 HOH A 11 984 12 HOH HOH . 
F 5 HOH A 12 985 13 HOH HOH . 
F 5 HOH A 13 986 15 HOH HOH . 
F 5 HOH A 14 987 17 HOH HOH . 
F 5 HOH A 15 988 18 HOH HOH . 
F 5 HOH A 16 989 19 HOH HOH . 
F 5 HOH A 17 990 20 HOH HOH . 
F 5 HOH A 18 991 22 HOH HOH . 
F 5 HOH A 19 992 23 HOH HOH . 
F 5 HOH A 20 993 24 HOH HOH . 
F 5 HOH A 21 994 25 HOH HOH . 
F 5 HOH A 22 995 26 HOH HOH . 
F 5 HOH A 23 996 27 HOH HOH . 
F 5 HOH A 24 997 28 HOH HOH . 
F 5 HOH A 25 998 29 HOH HOH . 
F 5 HOH A 26 999 30 HOH HOH . 
F 5 HOH A 27 1000 31 HOH HOH . 
F 5 HOH A 28 1001 33 HOH HOH . 
F 5 HOH A 29 1002 37 HOH HOH . 
F 5 HOH A 30 1003 38 HOH HOH . 
F 5 HOH A 31 1004 39 HOH HOH . 
F 5 HOH A 32 1005 40 HOH HOH . 
F 5 HOH A 33 1006 41 HOH HOH . 
F 5 HOH A 34 1007 42 HOH HOH . 
F 5 HOH A 35 1008 43 HOH HOH . 
F 5 HOH A 36 1009 44 HOH HOH . 
F 5 HOH A 37 1010 45 HOH HOH . 
F 5 HOH A 38 1011 46 HOH HOH . 
F 5 HOH A 39 1012 47 HOH HOH . 
F 5 HOH A 40 1013 48 HOH HOH . 
F 5 HOH A 41 1014 49 HOH HOH . 
F 5 HOH A 42 1015 51 HOH HOH . 
F 5 HOH A 43 1016 52 HOH HOH . 
F 5 HOH A 44 1017 53 HOH HOH . 
F 5 HOH A 45 1018 54 HOH HOH . 
F 5 HOH A 46 1019 55 HOH HOH . 
F 5 HOH A 47 1020 56 HOH HOH . 
F 5 HOH A 48 1021 57 HOH HOH . 
F 5 HOH A 49 1022 58 HOH HOH . 
F 5 HOH A 50 1023 59 HOH HOH . 
F 5 HOH A 51 1024 60 HOH HOH . 
F 5 HOH A 52 1025 63 HOH HOH . 
F 5 HOH A 53 1026 64 HOH HOH . 
F 5 HOH A 54 1027 65 HOH HOH . 
F 5 HOH A 55 1028 66 HOH HOH . 
F 5 HOH A 56 1029 67 HOH HOH . 
F 5 HOH A 57 1030 68 HOH HOH . 
F 5 HOH A 58 1031 69 HOH HOH . 
F 5 HOH A 59 1032 70 HOH HOH . 
F 5 HOH A 60 1033 71 HOH HOH . 
F 5 HOH A 61 1034 72 HOH HOH . 
F 5 HOH A 62 1035 73 HOH HOH . 
F 5 HOH A 63 1036 74 HOH HOH . 
F 5 HOH A 64 1037 75 HOH HOH . 
F 5 HOH A 65 1038 76 HOH HOH . 
F 5 HOH A 66 1039 77 HOH HOH . 
F 5 HOH A 67 1040 78 HOH HOH . 
F 5 HOH A 68 1041 79 HOH HOH . 
F 5 HOH A 69 1042 80 HOH HOH . 
F 5 HOH A 70 1043 81 HOH HOH . 
F 5 HOH A 71 1044 82 HOH HOH . 
F 5 HOH A 72 1045 83 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . C 3 -3.078 9.192 17.698 1 37.53 ? C1 DIO 800 A 1 
HETATM 2 C C2 DIO . . . C 3 -3.836 7.657 19.218 1 44.36 ? C2 DIO 800 A 1 
HETATM 3 C C1' DIO . . . C 3 -4.356 9.995 17.84 1 40.72 ? C1' DIO 800 A 1 
HETATM 4 C C2' DIO . . . C 3 -5.12 8.445 19.388 1 45.59 ? C2' DIO 800 A 1 
HETATM 5 O O1 DIO . . . C 3 -2.786 8.56 18.92 1 49.47 ? O1 DIO 800 A 1 
HETATM 6 O O1' DIO . . . C 3 -4.855 9.82 19.149 1 51.34 ? O1' DIO 800 A 1 
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_model_server_stats.io_time_ms              5 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           6 
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