data_2NM3 # _model_server_result.job_id MaDoTcbryQSjliq7WU_mwA _model_server_result.datetime_utc '2024-11-05 13:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nm3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":131}' # _entry.id 2NM3 # _exptl.entry_id 2NM3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 253.215 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description D-MONAPTERIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NM3 _cell.length_a 61.191 _cell.length_b 61.191 _cell.length_c 124.528 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NM3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 61.191 61.191 0 3 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 61.191 0 0 4 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 61.191 0 5 'crystal symmetry operation' 5_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 61.191 0 124.528 6 'crystal symmetry operation' 6_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 61.191 124.528 7 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 124.528 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 61.191 61.191 124.528 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H11 N5 O4' _chem_comp.formula_weight 253.215 _chem_comp.id MPU _chem_comp.mon_nstd_flag . _chem_comp.name D-MONAPTERIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-AMINO-6-((1S,2S)-1,2,3-TRIHYDROXYPROPYL)PTERIDIN-4(3H)-ONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C1 MPU sing 230 n y N2 C3 MPU sing 231 n y N2 HN2 MPU sing 232 n n C1 O11 MPU doub 233 n n C1 C10 MPU sing 234 n y C10 N9 MPU sing 235 n y C10 C5 MPU doub 236 n y N9 C8 MPU doub 237 n y C8 C7 MPU sing 238 n y C8 C16 MPU sing 239 n n C7 N6 MPU doub 240 n y C7 H7 MPU sing 241 n n N6 C5 MPU sing 242 n y C5 N4 MPU sing 243 n y N4 C3 MPU doub 244 n y C3 N13 MPU sing 245 n n N13 H131 MPU sing 246 n n N13 H132 MPU sing 247 n n C16 O21 MPU sing 248 n n C16 C26 MPU sing 249 n n C16 H16 MPU sing 250 n n O21 H21 MPU sing 251 n n C26 O22 MPU sing 252 n n C26 C28 MPU sing 253 n n C26 H26 MPU sing 254 n n O22 H22 MPU sing 255 n n C28 O24 MPU sing 256 n n C28 H281 MPU sing 257 n n C28 H282 MPU sing 258 n n O24 H24 MPU sing 259 n n # _atom_sites.entry_id 2NM3 _atom_sites.fract_transf_matrix[1][1] 0.016342 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016342 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 125 125 ACT ACT . C 3 MPU A 1 131 131 MPU MPU . D 4 HOH A 1 201 201 HOH HOH . D 4 HOH A 2 202 202 HOH HOH . D 4 HOH A 3 203 203 HOH HOH . D 4 HOH A 4 204 204 HOH HOH . D 4 HOH A 5 205 205 HOH HOH . D 4 HOH A 6 206 206 HOH HOH . D 4 HOH A 7 207 207 HOH HOH . D 4 HOH A 8 208 208 HOH HOH . D 4 HOH A 9 209 209 HOH HOH . D 4 HOH A 10 210 210 HOH HOH . D 4 HOH A 11 211 211 HOH HOH . D 4 HOH A 12 212 212 HOH HOH . D 4 HOH A 13 213 213 HOH HOH . D 4 HOH A 14 214 214 HOH HOH . D 4 HOH A 15 215 215 HOH HOH . D 4 HOH A 16 216 216 HOH HOH . D 4 HOH A 17 217 217 HOH HOH . D 4 HOH A 18 218 218 HOH HOH . D 4 HOH A 19 219 219 HOH HOH . D 4 HOH A 20 220 220 HOH HOH . D 4 HOH A 21 221 221 HOH HOH . D 4 HOH A 22 222 222 HOH HOH . D 4 HOH A 23 223 223 HOH HOH . D 4 HOH A 24 224 224 HOH HOH . D 4 HOH A 25 225 225 HOH HOH . D 4 HOH A 26 226 226 HOH HOH . D 4 HOH A 27 227 227 HOH HOH . D 4 HOH A 28 228 228 HOH HOH . D 4 HOH A 29 229 229 HOH HOH . D 4 HOH A 30 230 230 HOH HOH . D 4 HOH A 31 231 231 HOH HOH . D 4 HOH A 32 232 232 HOH HOH . D 4 HOH A 33 233 233 HOH HOH . D 4 HOH A 34 234 234 HOH HOH . D 4 HOH A 35 235 235 HOH HOH . D 4 HOH A 36 236 236 HOH HOH . D 4 HOH A 37 237 237 HOH HOH . D 4 HOH A 38 238 238 HOH HOH . D 4 HOH A 39 239 239 HOH HOH . D 4 HOH A 40 240 240 HOH HOH . D 4 HOH A 41 241 241 HOH HOH . D 4 HOH A 42 242 242 HOH HOH . D 4 HOH A 43 243 243 HOH HOH . D 4 HOH A 44 244 244 HOH HOH . D 4 HOH A 45 245 245 HOH HOH . D 4 HOH A 46 246 246 HOH HOH . D 4 HOH A 47 247 247 HOH HOH . D 4 HOH A 48 248 248 HOH HOH . D 4 HOH A 49 249 249 HOH HOH . D 4 HOH A 50 250 250 HOH HOH . D 4 HOH A 51 251 251 HOH HOH . D 4 HOH A 52 252 252 HOH HOH . D 4 HOH A 53 253 253 HOH HOH . D 4 HOH A 54 254 254 HOH HOH . D 4 HOH A 55 255 255 HOH HOH . D 4 HOH A 56 256 256 HOH HOH . D 4 HOH A 57 257 257 HOH HOH . D 4 HOH A 58 258 258 HOH HOH . D 4 HOH A 59 259 259 HOH HOH . D 4 HOH A 60 260 260 HOH HOH . D 4 HOH A 61 261 261 HOH HOH . D 4 HOH A 62 262 262 HOH HOH . D 4 HOH A 63 263 263 HOH HOH . D 4 HOH A 64 264 264 HOH HOH . D 4 HOH A 65 265 265 HOH HOH . D 4 HOH A 66 266 266 HOH HOH . D 4 HOH A 67 267 267 HOH HOH . D 4 HOH A 68 268 268 HOH HOH . D 4 HOH A 69 269 269 HOH HOH . D 4 HOH A 70 270 270 HOH HOH . D 4 HOH A 71 271 271 HOH HOH . D 4 HOH A 72 272 272 HOH HOH . D 4 HOH A 73 273 273 HOH HOH . D 4 HOH A 74 274 274 HOH HOH . D 4 HOH A 75 275 275 HOH HOH . D 4 HOH A 76 276 276 HOH HOH . D 4 HOH A 77 277 277 HOH HOH . D 4 HOH A 78 278 278 HOH HOH . D 4 HOH A 79 279 279 HOH HOH . D 4 HOH A 80 280 280 HOH HOH . D 4 HOH A 81 281 281 HOH HOH . D 4 HOH A 82 282 282 HOH HOH . D 4 HOH A 83 283 283 HOH HOH . D 4 HOH A 84 284 284 HOH HOH . D 4 HOH A 85 285 285 HOH HOH . D 4 HOH A 86 286 286 HOH HOH . D 4 HOH A 87 287 287 HOH HOH . D 4 HOH A 88 288 288 HOH HOH . D 4 HOH A 89 289 289 HOH HOH . D 4 HOH A 90 290 290 HOH HOH . D 4 HOH A 91 291 291 HOH HOH . D 4 HOH A 92 292 292 HOH HOH . D 4 HOH A 93 293 293 HOH HOH . D 4 HOH A 94 294 294 HOH HOH . D 4 HOH A 95 295 295 HOH HOH . D 4 HOH A 96 296 296 HOH HOH . D 4 HOH A 97 297 297 HOH HOH . D 4 HOH A 98 298 298 HOH HOH . D 4 HOH A 99 299 299 HOH HOH . D 4 HOH A 100 300 300 HOH HOH . D 4 HOH A 101 301 301 HOH HOH . D 4 HOH A 102 302 302 HOH HOH . D 4 HOH A 103 303 303 HOH HOH . D 4 HOH A 104 304 304 HOH HOH . D 4 HOH A 105 305 305 HOH HOH . D 4 HOH A 106 307 307 HOH HOH . D 4 HOH A 107 308 308 HOH HOH . D 4 HOH A 108 309 309 HOH HOH . D 4 HOH A 109 310 310 HOH HOH . D 4 HOH A 110 312 312 HOH HOH . D 4 HOH A 111 313 313 HOH HOH . D 4 HOH A 112 314 314 HOH HOH . D 4 HOH A 113 315 315 HOH HOH . D 4 HOH A 114 316 316 HOH HOH . D 4 HOH A 115 317 317 HOH HOH . D 4 HOH A 116 318 318 HOH HOH . D 4 HOH A 117 319 319 HOH HOH . D 4 HOH A 118 320 320 HOH HOH . D 4 HOH A 119 321 321 HOH HOH . D 4 HOH A 120 322 322 HOH HOH . D 4 HOH A 121 323 323 HOH HOH . D 4 HOH A 122 324 324 HOH HOH . D 4 HOH A 123 325 325 HOH HOH . D 4 HOH A 124 326 326 HOH HOH . D 4 HOH A 125 327 327 HOH HOH . D 4 HOH A 126 328 328 HOH HOH . D 4 HOH A 127 329 329 HOH HOH . D 4 HOH A 128 330 330 HOH HOH . D 4 HOH A 129 331 331 HOH HOH . D 4 HOH A 130 332 332 HOH HOH . D 4 HOH A 131 333 333 HOH HOH . D 4 HOH A 132 334 334 HOH HOH . D 4 HOH A 133 335 335 HOH HOH . D 4 HOH A 134 336 336 HOH HOH . D 4 HOH A 135 337 337 HOH HOH . D 4 HOH A 136 338 338 HOH HOH . D 4 HOH A 137 339 339 HOH HOH . D 4 HOH A 138 340 340 HOH HOH . D 4 HOH A 139 341 341 HOH HOH . D 4 HOH A 140 342 342 HOH HOH . D 4 HOH A 141 343 343 HOH HOH . D 4 HOH A 142 344 344 HOH HOH . D 4 HOH A 143 345 345 HOH HOH . D 4 HOH A 144 346 346 HOH HOH . D 4 HOH A 145 347 347 HOH HOH . D 4 HOH A 146 348 348 HOH HOH . D 4 HOH A 147 349 349 HOH HOH . D 4 HOH A 148 350 350 HOH HOH . D 4 HOH A 149 351 351 HOH HOH . D 4 HOH A 150 352 352 HOH HOH . D 4 HOH A 151 353 353 HOH HOH . D 4 HOH A 152 354 354 HOH HOH . D 4 HOH A 153 355 355 HOH HOH . D 4 HOH A 154 356 356 HOH HOH . D 4 HOH A 155 357 357 HOH HOH . D 4 HOH A 156 358 358 HOH HOH . D 4 HOH A 157 359 359 HOH HOH . D 4 HOH A 158 360 360 HOH HOH . D 4 HOH A 159 361 361 HOH HOH . D 4 HOH A 160 362 362 HOH HOH . D 4 HOH A 161 363 363 HOH HOH . D 4 HOH A 162 364 364 HOH HOH . D 4 HOH A 163 365 365 HOH HOH . D 4 HOH A 164 366 366 HOH HOH . D 4 HOH A 165 367 367 HOH HOH . D 4 HOH A 166 368 368 HOH HOH . D 4 HOH A 167 369 369 HOH HOH . D 4 HOH A 168 370 370 HOH HOH . D 4 HOH A 169 371 371 HOH HOH . D 4 HOH A 170 372 372 HOH HOH . D 4 HOH A 171 373 373 HOH HOH . D 4 HOH A 172 374 374 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N2 MPU . . . C 3 46.93 45.902 78.337 1 24.88 ? N2 MPU 131 A 1 HETATM 2 C C1 MPU . . . C 3 47.132 46.715 77.177 1 25.72 ? C1 MPU 131 A 1 HETATM 3 O O11 MPU . . . C 3 46.422 47.67 76.79 1 20.18 ? O11 MPU 131 A 1 HETATM 4 C C10 MPU . . . C 3 48.341 46.267 76.451 1 30.84 ? C10 MPU 131 A 1 HETATM 5 N N9 MPU . . . C 3 48.567 47.028 75.321 1 31.2 ? N9 MPU 131 A 1 HETATM 6 C C8 MPU . . . C 3 49.641 46.665 74.632 1 33.34 ? C8 MPU 131 A 1 HETATM 7 C C7 MPU . . . C 3 50.592 45.541 74.963 1 28.72 ? C7 MPU 131 A 1 HETATM 8 N N6 MPU . . . C 3 50.273 44.825 76.131 1 23.45 ? N6 MPU 131 A 1 HETATM 9 C C5 MPU . . . C 3 49.153 45.167 76.903 1 27.66 ? C5 MPU 131 A 1 HETATM 10 N N4 MPU . . . C 3 48.871 44.425 78.067 1 26.63 ? N4 MPU 131 A 1 HETATM 11 C C3 MPU . . . C 3 47.771 44.825 78.738 1 28.53 ? C3 MPU 131 A 1 HETATM 12 N N13 MPU . . . C 3 47.509 44.085 79.868 1 18.62 ? N13 MPU 131 A 1 HETATM 13 C C16 MPU . . . C 3 49.899 47.497 73.44 1 41.33 ? C16 MPU 131 A 1 HETATM 14 O O21 MPU . . . C 3 48.95 48.495 73.198 1 41.14 ? O21 MPU 131 A 1 HETATM 15 C C26 MPU . . . C 3 50.269 46.785 72.128 1 51.56 ? C26 MPU 131 A 1 HETATM 16 O O22 MPU . . . C 3 51.562 46.208 71.98 1 80.34 ? O22 MPU 131 A 1 HETATM 17 C C28 MPU . . . C 3 49.278 45.661 71.691 1 45.55 ? C28 MPU 131 A 1 HETATM 18 O O24 MPU . . . C 3 48.007 46.194 71.42 1 41.37 ? O24 MPU 131 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 18 #