data_2NMT # _model_server_result.job_id VWOWquDVuOBGT2jG0omsMw _model_server_result.datetime_utc '2025-07-10 04:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nmt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 2NMT # _exptl.entry_id 2NMT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 991.916 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-(2-OXO)PENTADECYLCOA _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 2NMT _cell.length_a 105.4 _cell.length_b 105.4 _cell.length_c 106.7 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NMT _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H64 N7 O17 P3 S' _chem_comp.formula_weight 991.916 _chem_comp.id NHM _chem_comp.mon_nstd_flag . _chem_comp.name S-(2-OXO)PENTADECYLCOA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6A C6A NHM sing 347 n n N6A HN61 NHM sing 348 n n N6A HN62 NHM sing 349 n n C6A N1A NHM doub 350 n y C6A C5A NHM sing 351 n y N1A C2A NHM sing 352 n y C2A N3A NHM doub 353 n y C2A H2A NHM sing 354 n n N3A C4A NHM sing 355 n y C4A C5A NHM doub 356 n y C4A N9A NHM sing 357 n y C5A N7A NHM sing 358 n y N9A C8A NHM sing 359 n y N9A C1X NHM sing 360 n n N7A C8A NHM doub 361 n y C8A H8A NHM sing 362 n n CEM CDM NHM sing 363 n n CEM HEM1 NHM sing 364 n n CEM HEM2 NHM sing 365 n n CEM HEM3 NHM sing 366 n n CAM CBM NHM sing 367 n n CAM C9M NHM sing 368 n n CAM HAM1 NHM sing 369 n n CAM HAM2 NHM sing 370 n n CBM CCM NHM sing 371 n n CBM HBM1 NHM sing 372 n n CBM HBM2 NHM sing 373 n n CCM CDM NHM sing 374 n n CCM HCM1 NHM sing 375 n n CCM HCM2 NHM sing 376 n n CDM HDM1 NHM sing 377 n n CDM HDM2 NHM sing 378 n n C9M C8M NHM sing 379 n n C9M H9M1 NHM sing 380 n n C9M H9M2 NHM sing 381 n n C8M C7M NHM sing 382 n n C8M H8M1 NHM sing 383 n n C8M H8M2 NHM sing 384 n n C7M C6M NHM sing 385 n n C7M H7M1 NHM sing 386 n n C7M H7M2 NHM sing 387 n n C6M C5M NHM sing 388 n n C6M H6M1 NHM sing 389 n n C6M H6M2 NHM sing 390 n n C2M C3M NHM sing 391 n n C2M C1M NHM sing 392 n n C2M H2M1 NHM sing 393 n n C2M H2M2 NHM sing 394 n n C3M C4M NHM sing 395 n n C3M H3M1 NHM sing 396 n n C3M H3M2 NHM sing 397 n n C4M C5M NHM sing 398 n n C4M H4M1 NHM sing 399 n n C4M H4M2 NHM sing 400 n n C5M H5M1 NHM sing 401 n n C5M H5M2 NHM sing 402 n n C1M O1M NHM doub 403 n n C1M CP NHM sing 404 n n CP S1 NHM sing 405 n n CP HP1 NHM sing 406 n n CP HP2 NHM sing 407 n n P3X O7A NHM sing 408 n n P3X O8A NHM sing 409 n n P3X O9A NHM doub 410 n n P3X O3X NHM sing 411 n n O7A HO7A NHM sing 412 n n O8A HO8A NHM sing 413 n n O3X C3X NHM sing 414 n n S1 C2 NHM sing 415 n n N4 C5 NHM sing 416 n n N4 C3 NHM sing 417 n n N4 HN4 NHM sing 418 n n C5 O5 NHM doub 419 n n C5 C6 NHM sing 420 n n C6 C7 NHM sing 421 n n C6 H61 NHM sing 422 n n C6 H62 NHM sing 423 n n C7 N8 NHM sing 424 n n C7 H71 NHM sing 425 n n C7 H72 NHM sing 426 n n N8 C9 NHM sing 427 n n N8 HN8 NHM sing 428 n n C9 O9 NHM doub 429 n n C9 C10 NHM sing 430 n n C13 C11 NHM sing 431 n n C13 H131 NHM sing 432 n n C13 H132 NHM sing 433 n n C13 H133 NHM sing 434 n n C11 C14 NHM sing 435 n n C11 C12 NHM sing 436 n n C11 C10 NHM sing 437 n n C14 H141 NHM sing 438 n n C14 H142 NHM sing 439 n n C14 H143 NHM sing 440 n n C12 O6A NHM sing 441 n n C12 H121 NHM sing 442 n n C12 H122 NHM sing 443 n n P1A O2A NHM doub 444 n n P1A O1A NHM sing 445 n n P1A O3A NHM sing 446 n n P1A O5X NHM sing 447 n n O1A HO1A NHM sing 448 n n O3A P2A NHM sing 449 n n O5X C5X NHM sing 450 n n C4X O4X NHM sing 451 n n C4X C3X NHM sing 452 n n C4X C5X NHM sing 453 n n C4X H4X NHM sing 454 n n O4X C1X NHM sing 455 n n C1X C2X NHM sing 456 n n C1X H1X NHM sing 457 n n C2X O2X NHM sing 458 n n C2X C3X NHM sing 459 n n C2X H2X NHM sing 460 n n O2X HO2X NHM sing 461 n n C3X H3X NHM sing 462 n n C5X H5X1 NHM sing 463 n n C5X H5X2 NHM sing 464 n n P2A O4A NHM doub 465 n n P2A O5A NHM sing 466 n n P2A O6A NHM sing 467 n n O5A HO5A NHM sing 468 n n C10 O10 NHM sing 469 n n C10 H10 NHM sing 470 n n O10 HOA NHM sing 471 n n C3 C2 NHM sing 472 n n C3 H31 NHM sing 473 n n C3 H32 NHM sing 474 n n C2 H21 NHM sing 475 n n C2 H22 NHM sing 476 n n # _atom_sites.entry_id 2NMT _atom_sites.fract_transf_matrix[1][1] 0.009488 _atom_sites.fract_transf_matrix[1][2] 0.005478 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010955 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NHM A 1 500 500 NHM NHM . C 3 MIM A 1 700 700 MIM MIM . D 4 GOL A 1 801 801 GOL GOL . E 4 GOL A 1 802 802 GOL GOL . F 4 GOL A 1 803 803 GOL GOL . G 4 GOL A 1 804 804 GOL GOL . H 4 GOL A 1 805 805 GOL GOL . I 4 GOL A 1 806 806 GOL GOL . J 4 GOL A 1 807 807 GOL GOL . K 4 GOL A 1 808 808 GOL GOL . L 4 GOL A 1 809 809 GOL GOL . M 4 GOL A 1 810 810 GOL GOL . N 4 GOL A 1 811 811 GOL GOL . O 4 GOL A 1 812 812 GOL GOL . P 5 HOH A 1 1002 1002 HOH HOH . P 5 HOH A 2 1003 1003 HOH HOH . P 5 HOH A 3 1005 1005 HOH HOH . P 5 HOH A 4 1006 1006 HOH HOH . P 5 HOH A 5 1007 1007 HOH HOH . P 5 HOH A 6 1009 1009 HOH HOH . P 5 HOH A 7 1011 1011 HOH HOH . P 5 HOH A 8 1012 1012 HOH HOH . P 5 HOH A 9 1013 1013 HOH HOH . P 5 HOH A 10 1015 1015 HOH HOH . P 5 HOH A 11 1016 1016 HOH HOH . P 5 HOH A 12 1017 1017 HOH HOH . P 5 HOH A 13 1019 1019 HOH HOH . P 5 HOH A 14 1021 1021 HOH HOH . P 5 HOH A 15 1024 1024 HOH HOH . P 5 HOH A 16 1026 1026 HOH HOH . P 5 HOH A 17 1028 1028 HOH HOH . P 5 HOH A 18 1034 1034 HOH HOH . P 5 HOH A 19 1036 1036 HOH HOH . P 5 HOH A 20 1038 1038 HOH HOH . P 5 HOH A 21 1041 1041 HOH HOH . P 5 HOH A 22 1043 1043 HOH HOH . P 5 HOH A 23 1046 1046 HOH HOH . P 5 HOH A 24 1052 1052 HOH HOH . P 5 HOH A 25 1054 1054 HOH HOH . P 5 HOH A 26 1055 1055 HOH HOH . P 5 HOH A 27 1056 1056 HOH HOH . P 5 HOH A 28 1060 1060 HOH HOH . P 5 HOH A 29 1061 1061 HOH HOH . P 5 HOH A 30 1068 1068 HOH HOH . P 5 HOH A 31 1071 1071 HOH HOH . P 5 HOH A 32 1073 1073 HOH HOH . P 5 HOH A 33 1075 1075 HOH HOH . P 5 HOH A 34 1077 1077 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N6A NHM . . . B 2 19.965 25.077 76.008 1 44.17 ? N6A NHM 500 A 1 HETATM 2 C C6A NHM . . . B 2 19.09 24.25 76.755 1 42.23 ? C6A NHM 500 A 1 HETATM 3 N N1A NHM . . . B 2 19.419 23.972 78 1 43.46 ? N1A NHM 500 A 1 HETATM 4 C C2A NHM . . . B 2 18.624 23.201 78.731 1 43.89 ? C2A NHM 500 A 1 HETATM 5 N N3A NHM . . . B 2 17.495 22.628 78.388 1 43.53 ? N3A NHM 500 A 1 HETATM 6 C C4A NHM . . . B 2 17.037 22.865 77.032 1 42.68 ? C4A NHM 500 A 1 HETATM 7 C C5A NHM . . . B 2 17.86 23.704 76.177 1 43 ? C5A NHM 500 A 1 HETATM 8 N N9A NHM . . . B 2 15.95 22.459 76.313 1 45.29 ? N9A NHM 500 A 1 HETATM 9 N N7A NHM . . . B 2 17.32 23.853 74.922 1 46.35 ? N7A NHM 500 A 1 HETATM 10 C C8A NHM . . . B 2 16.198 23.08 75.118 1 45.88 ? C8A NHM 500 A 1 HETATM 11 C CEM NHM . . . B 2 24.994 17.313 88.34 1 36.98 ? CEM NHM 500 A 1 HETATM 12 C CAM NHM . . . B 2 23.392 18.648 83.969 1 42.64 ? CAM NHM 500 A 1 HETATM 13 C CBM NHM . . . B 2 24.444 18.066 84.91 1 40.63 ? CBM NHM 500 A 1 HETATM 14 C CCM NHM . . . B 2 23.868 17.232 86.038 1 39 ? CCM NHM 500 A 1 HETATM 15 C CDM NHM . . . B 2 24.947 16.675 86.959 1 37.75 ? CDM NHM 500 A 1 HETATM 16 C C9M NHM . . . B 2 22.919 20.076 84.337 1 40.06 ? C9M NHM 500 A 1 HETATM 17 C C8M NHM . . . B 2 21.97 20.675 83.316 1 40.06 ? C8M NHM 500 A 1 HETATM 18 C C7M NHM . . . B 2 22.54 20.597 81.896 1 42.83 ? C7M NHM 500 A 1 HETATM 19 C C6M NHM . . . B 2 21.507 20.836 80.781 1 42.62 ? C6M NHM 500 A 1 HETATM 20 C C2M NHM . . . B 2 24.24 24.211 78.677 1 46.47 ? C2M NHM 500 A 1 HETATM 21 C C3M NHM . . . B 2 22.827 23.717 78.439 1 45.33 ? C3M NHM 500 A 1 HETATM 22 C C4M NHM . . . B 2 22.638 22.295 78.988 1 44.43 ? C4M NHM 500 A 1 HETATM 23 C C5M NHM . . . B 2 21.636 22.225 80.151 1 45.27 ? C5M NHM 500 A 1 HETATM 24 C C1M NHM . . . B 2 24.889 24.684 77.427 1 49.1 ? C1M NHM 500 A 1 HETATM 25 O O1M NHM . . . B 2 25.377 23.878 76.683 1 48.66 ? O1M NHM 500 A 1 HETATM 26 C CP NHM . . . B 2 24.931 26.15 77.064 1 49.9 ? CP NHM 500 A 1 HETATM 27 P P3X NHM . . . B 2 10.933 21.02 78.584 1 56.21 ? P3X NHM 500 A 1 HETATM 28 O O7A NHM . . . B 2 9.727 20.063 78.001 1 54.64 ? O7A NHM 500 A 1 HETATM 29 O O8A NHM . . . B 2 10.575 22.595 78.37 1 57.55 ? O8A NHM 500 A 1 HETATM 30 O O9A NHM . . . B 2 11.167 20.777 80.132 1 55.74 ? O9A NHM 500 A 1 HETATM 31 O O3X NHM . . . B 2 12.253 20.625 77.826 1 53.55 ? O3X NHM 500 A 1 HETATM 32 S S1 NHM . . . B 2 23.521 26.743 76.082 1 51.09 ? S1 NHM 500 A 1 HETATM 33 N N4 NHM . . . B 2 22.964 24.989 72.582 1 40.12 ? N4 NHM 500 A 1 HETATM 34 C C5 NHM . . . B 2 22.21 25.374 71.594 1 40.17 ? C5 NHM 500 A 1 HETATM 35 O O5 NHM . . . B 2 21.183 26.003 71.746 1 37.43 ? O5 NHM 500 A 1 HETATM 36 C C6 NHM . . . B 2 22.712 24.986 70.181 1 42.35 ? C6 NHM 500 A 1 HETATM 37 C C7 NHM . . . B 2 21.626 24.942 69.061 1 40.3 ? C7 NHM 500 A 1 HETATM 38 N N8 NHM . . . B 2 20.428 24.352 69.57 1 39.81 ? N8 NHM 500 A 1 HETATM 39 C C9 NHM . . . B 2 20.259 23.066 69.679 1 43.09 ? C9 NHM 500 A 1 HETATM 40 O O9 NHM . . . B 2 21.093 22.201 69.352 1 45.3 ? O9 NHM 500 A 1 HETATM 41 C C13 NHM . . . B 2 19.536 23.248 72.731 1 42.82 ? C13 NHM 500 A 1 HETATM 42 C C11 NHM . . . B 2 19.036 22.141 71.773 1 41.93 ? C11 NHM 500 A 1 HETATM 43 C C14 NHM . . . B 2 19.99 20.922 71.89 1 44.54 ? C14 NHM 500 A 1 HETATM 44 C C12 NHM . . . B 2 17.638 21.723 72.214 1 45.11 ? C12 NHM 500 A 1 HETATM 45 P P1A NHM . . . B 2 14.362 18.949 72.299 1 46.62 ? P1A NHM 500 A 1 HETATM 46 O O2A NHM . . . B 2 12.987 18.388 71.657 1 46.11 ? O2A NHM 500 A 1 HETATM 47 O O1A NHM . . . B 2 15.609 17.963 71.958 1 41.52 ? O1A NHM 500 A 1 HETATM 48 O O3A NHM . . . B 2 14.597 20.425 71.726 1 44.17 ? O3A NHM 500 A 1 HETATM 49 O O5X NHM . . . B 2 14.162 19.054 73.86 1 46.2 ? O5X NHM 500 A 1 HETATM 50 C C4X NHM . . . B 2 13.41 19.963 75.849 1 47.25 ? C4X NHM 500 A 1 HETATM 51 O O4X NHM . . . B 2 14.776 20.247 76.276 1 45.23 ? O4X NHM 500 A 1 HETATM 52 C C1X NHM . . . B 2 14.835 21.618 76.752 1 47.36 ? C1X NHM 500 A 1 HETATM 53 C C2X NHM . . . B 2 13.44 22.244 76.481 1 48.97 ? C2X NHM 500 A 1 HETATM 54 O O2X NHM . . . B 2 13.127 23.241 77.456 1 51.51 ? O2X NHM 500 A 1 HETATM 55 C C3X NHM . . . B 2 12.548 21.036 76.517 1 50.06 ? C3X NHM 500 A 1 HETATM 56 C C5X NHM . . . B 2 13.28 19.991 74.361 1 45.21 ? C5X NHM 500 A 1 HETATM 57 P P2A NHM . . . B 2 15.732 20.7 70.678 1 42.3 ? P2A NHM 500 A 1 HETATM 58 O O4A NHM . . . B 2 15.51 22.157 70.096 1 46.51 ? O4A NHM 500 A 1 HETATM 59 O O5A NHM . . . B 2 15.696 19.62 69.518 1 42.61 ? O5A NHM 500 A 1 HETATM 60 O O6A NHM . . . B 2 17.138 20.627 71.431 1 45.41 ? O6A NHM 500 A 1 HETATM 61 C C10 NHM . . . B 2 18.937 22.677 70.299 1 43.87 ? C10 NHM 500 A 1 HETATM 62 O O10 NHM . . . B 2 18.395 21.714 69.431 1 46.25 ? O10 NHM 500 A 1 HETATM 63 C C3 NHM . . . B 2 22.688 25.274 73.973 1 44.81 ? C3 NHM 500 A 1 HETATM 64 C C2 NHM . . . B 2 23.898 26.026 74.496 1 47.06 ? C2 NHM 500 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 356 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 64 #