data_2NMV # _model_server_result.job_id QDUrN6655kUQAYjxPzKXZA _model_server_result.datetime_utc '2024-12-06 20:57:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":600}' # _entry.id 2NMV # _exptl.entry_id 2NMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.306 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NMV _cell.length_a 74.41 _cell.length_b 95.597 _cell.length_c 97.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C7 _struct_conn.ptnr1_label_comp_id DT _struct_conn.ptnr1_label_seq_id 3 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id DT _struct_conn.ptnr1_auth_seq_id 3 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NML _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id NML _struct_conn.ptnr2_auth_seq_id 103 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.568 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H12 O5' _chem_comp.formula_weight 332.306 _chem_comp.id FLU _chem_comp.mon_nstd_flag . _chem_comp.name '2-(6-HYDROXY-3-OXO-3H-XANTHEN-9-YL)-BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FLUORESCEIN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 FLU sing 164 n n C1 C2 FLU doub 165 n y C1 C13 FLU sing 166 n y O1 HO1 FLU sing 167 n n C2 C3 FLU sing 168 n y C2 H2 FLU sing 169 n n C3 O2 FLU sing 170 n y C3 C11 FLU doub 171 n y O2 C4 FLU sing 172 n y C4 C5 FLU doub 173 n y C4 C9 FLU sing 174 n y C5 C6 FLU sing 175 n y C5 H5 FLU sing 176 n n C6 O3 FLU doub 177 n n C6 C7 FLU sing 178 n y C7 C8 FLU doub 179 n y C7 H7 FLU sing 180 n n C8 C9 FLU sing 181 n y C8 H8 FLU sing 182 n n C9 C10 FLU doub 183 n y C10 C11 FLU sing 184 n y C10 C14 FLU sing 185 n y C11 C12 FLU sing 186 n y C12 C13 FLU doub 187 n y C12 H12 FLU sing 188 n n C13 H13 FLU sing 189 n n C14 C15 FLU doub 190 n y C14 C19 FLU sing 191 n y C15 C16 FLU sing 192 n y C15 H15 FLU sing 193 n n C16 C17 FLU doub 194 n y C16 H16 FLU sing 195 n n C17 C18 FLU sing 196 n y C17 H17 FLU sing 197 n n C18 C19 FLU doub 198 n y C18 H18 FLU sing 199 n n C19 C20 FLU sing 200 n n C20 O4 FLU doub 201 n n C20 O5 FLU sing 202 n n O5 HO5 FLU sing 203 n n # _atom_sites.entry_id 2NMV _atom_sites.fract_transf_matrix[1][1] 0.013439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NML D 1 103 3 NML TFL . E 5 FLU D 1 600 600 FLU FLU . F 6 ADP A 1 662 500 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 FLU . . . E 5 -5.889 8.243 -27.378 1 95.95 ? C1 FLU 600 D 1 HETATM 2 O O1 FLU . . . E 5 -5.635 9.524 -27.058 1 96.37 ? O1 FLU 600 D 1 HETATM 3 C C2 FLU . . . E 5 -4.95 7.246 -27.099 1 95.64 ? C2 FLU 600 D 1 HETATM 4 C C3 FLU . . . E 5 -5.266 5.947 -27.453 1 95.93 ? C3 FLU 600 D 1 HETATM 5 O O2 FLU . . . E 5 -4.383 4.923 -27.206 1 95.55 ? O2 FLU 600 D 1 HETATM 6 C C4 FLU . . . E 5 -4.73 3.635 -27.569 1 96.05 ? C4 FLU 600 D 1 HETATM 7 C C5 FLU . . . E 5 -3.849 2.604 -27.317 1 96.09 ? C5 FLU 600 D 1 HETATM 8 C C6 FLU . . . E 5 -4.195 1.301 -27.686 1 96.19 ? C6 FLU 600 D 1 HETATM 9 O O3 FLU . . . E 5 -3.373 0.389 -27.452 1 96.35 ? O3 FLU 600 D 1 HETATM 10 C C7 FLU . . . E 5 -5.413 0.986 -28.305 1 95.9 ? C7 FLU 600 D 1 HETATM 11 C C8 FLU . . . E 5 -6.346 1.974 -28.584 1 95.99 ? C8 FLU 600 D 1 HETATM 12 C C9 FLU . . . E 5 -6.036 3.28 -28.234 1 96.12 ? C9 FLU 600 D 1 HETATM 13 C C10 FLU . . . E 5 -7.017 4.336 -28.53 1 95.95 ? C10 FLU 600 D 1 HETATM 14 C C11 FLU . . . E 5 -6.6 5.698 -28.12 1 96.31 ? C11 FLU 600 D 1 HETATM 15 C C12 FLU . . . E 5 -7.481 6.74 -28.368 1 96.15 ? C12 FLU 600 D 1 HETATM 16 C C13 FLU . . . E 5 -7.115 8.018 -27.99 1 95.85 ? C13 FLU 600 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #