data_2NMV # _model_server_result.job_id BD0RqMIkZmSvKL63JjaK3g _model_server_result.datetime_utc '2024-12-12 20:24:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 2nmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":662}' # _entry.id 2NMV # _exptl.entry_id 2NMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 2NMV _cell.length_a 74.41 _cell.length_b 95.597 _cell.length_c 97.878 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id C7 _struct_conn.ptnr1_label_comp_id DT _struct_conn.ptnr1_label_seq_id 3 _struct_conn.ptnr1_auth_asym_id D _struct_conn.ptnr1_auth_comp_id DT _struct_conn.ptnr1_auth_seq_id 3 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id D _struct_conn.ptnr2_label_atom_id C1 _struct_conn.ptnr2_label_comp_id NML _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id D _struct_conn.ptnr2_auth_comp_id NML _struct_conn.ptnr2_auth_seq_id 103 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.568 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 2NMV _atom_sites.fract_transf_matrix[1][1] 0.013439 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010461 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010217 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NML D 1 103 3 NML TFL . E 5 FLU D 1 600 600 FLU FLU . F 6 ADP A 1 662 500 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 6 -15.589 18.129 -16.371 1 84.11 ? PB ADP 662 A 1 HETATM 2 O O1B ADP . . . F 6 -16.691 17.101 -16.637 1 84.41 ? O1B ADP 662 A 1 HETATM 3 O O2B ADP . . . F 6 -14.163 17.605 -16.559 1 84.05 ? O2B ADP 662 A 1 HETATM 4 O O3B ADP . . . F 6 -15.848 18.943 -15.118 1 84.49 ? O3B ADP 662 A 1 HETATM 5 P PA ADP . . . F 6 -15.917 18.983 -19.097 1 85.64 ? PA ADP 662 A 1 HETATM 6 O O1A ADP . . . F 6 -14.527 18.606 -19.61 1 83.95 ? O1A ADP 662 A 1 HETATM 7 O O2A ADP . . . F 6 -17.084 18.031 -19.321 1 86 ? O2A ADP 662 A 1 HETATM 8 O O3A ADP . . . F 6 -15.77 19.276 -17.505 1 84.68 ? O3A ADP 662 A 1 HETATM 9 O O5' ADP . . . F 6 -16.328 20.467 -19.645 1 84.01 ? O5' ADP 662 A 1 HETATM 10 C C5' ADP . . . F 6 -17.649 20.904 -20.015 1 82.95 ? C5' ADP 662 A 1 HETATM 11 C C4' ADP . . . F 6 -17.714 21.091 -21.539 1 82.18 ? C4' ADP 662 A 1 HETATM 12 O O4' ADP . . . F 6 -17.509 22.454 -21.965 1 81.31 ? O4' ADP 662 A 1 HETATM 13 C C3' ADP . . . F 6 -16.596 20.283 -22.171 1 81.68 ? C3' ADP 662 A 1 HETATM 14 O O3' ADP . . . F 6 -17.074 19.686 -23.386 1 82.14 ? O3' ADP 662 A 1 HETATM 15 C C2' ADP . . . F 6 -15.478 21.302 -22.38 1 80.97 ? C2' ADP 662 A 1 HETATM 16 O O2' ADP . . . F 6 -14.603 20.931 -23.45 1 78.79 ? O2' ADP 662 A 1 HETATM 17 C C1' ADP . . . F 6 -16.197 22.649 -22.563 1 81.16 ? C1' ADP 662 A 1 HETATM 18 N N9 ADP . . . F 6 -15.411 23.792 -21.958 1 81.41 ? N9 ADP 662 A 1 HETATM 19 C C8 ADP . . . F 6 -14.547 23.695 -20.911 1 81.86 ? C8 ADP 662 A 1 HETATM 20 N N7 ADP . . . F 6 -13.972 24.887 -20.565 1 81.48 ? N7 ADP 662 A 1 HETATM 21 C C5 ADP . . . F 6 -14.461 25.812 -21.41 1 81.96 ? C5 ADP 662 A 1 HETATM 22 C C6 ADP . . . F 6 -14.271 27.282 -21.609 1 81.22 ? C6 ADP 662 A 1 HETATM 23 N N6 ADP . . . F 6 -13.433 28.015 -20.831 1 80.68 ? N6 ADP 662 A 1 HETATM 24 N N1 ADP . . . F 6 -14.976 27.873 -22.606 1 81.34 ? N1 ADP 662 A 1 HETATM 25 C C2 ADP . . . F 6 -15.824 27.178 -23.392 1 81.38 ? C2 ADP 662 A 1 HETATM 26 N N3 ADP . . . F 6 -16.036 25.845 -23.274 1 81.97 ? N3 ADP 662 A 1 HETATM 27 C C4 ADP . . . F 6 -15.404 25.097 -22.321 1 81.97 ? C4 ADP 662 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #