data_2NNH
#
_model_server_result.job_id            vhQY_ZBf1OPjCPPs6DNHqQ 
_model_server_result.datetime_utc      '2024-11-27 18:38:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          2nnh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":500}' 
#
_entry.id    2NNH 
#
_exptl.entry_id    2NNH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            2NNH 
_cell.length_a            139.81 
_cell.length_b            163.62 
_cell.length_c            73.555 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 2NNH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 software_defined_assembly 1 
PISA monomeric 1 software_defined_assembly 2 
? dimeric 2 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,M 1 1 
B,H,I,J,K,L,N 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 417 A CYS 435 1_555 D FE HEM . A HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 B SG CYS 417 B CYS 435 1_555 I FE HEM . B HEM 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 179 n n 
CHA C4D HEM doub 180 n n 
CHA HHA HEM sing 181 n n 
CHB C4A HEM sing 182 n n 
CHB C1B HEM doub 183 n n 
CHB HHB HEM sing 184 n n 
CHC C4B HEM sing 185 n n 
CHC C1C HEM doub 186 n n 
CHC HHC HEM sing 187 n n 
CHD C4C HEM doub 188 n n 
CHD C1D HEM sing 189 n n 
CHD HHD HEM sing 190 n n 
C1A C2A HEM doub 191 n y 
C1A NA HEM sing 192 n y 
C2A C3A HEM sing 193 n y 
C2A CAA HEM sing 194 n n 
C3A C4A HEM doub 195 n y 
C3A CMA HEM sing 196 n n 
C4A NA HEM sing 197 n y 
CMA HMA HEM sing 198 n n 
CMA HMAA HEM sing 199 n n 
CMA HMAB HEM sing 200 n n 
CAA CBA HEM sing 201 n n 
CAA HAA HEM sing 202 n n 
CAA HAAA HEM sing 203 n n 
CBA CGA HEM sing 204 n n 
CBA HBA HEM sing 205 n n 
CBA HBAA HEM sing 206 n n 
CGA O1A HEM doub 207 n n 
CGA O2A HEM sing 208 n n 
C1B C2B HEM sing 209 n n 
C1B NB HEM sing 210 n n 
C2B C3B HEM doub 211 n n 
C2B CMB HEM sing 212 n n 
C3B C4B HEM sing 213 n n 
C3B CAB HEM sing 214 n n 
C4B NB HEM doub 215 n n 
CMB HMB HEM sing 216 n n 
CMB HMBA HEM sing 217 n n 
CMB HMBB HEM sing 218 n n 
CAB CBB HEM doub 219 n n 
CAB HAB HEM sing 220 n n 
CBB HBB HEM sing 221 n n 
CBB HBBA HEM sing 222 n n 
C1C C2C HEM sing 223 n y 
C1C NC HEM sing 224 n y 
C2C C3C HEM doub 225 n y 
C2C CMC HEM sing 226 n n 
C3C C4C HEM sing 227 n y 
C3C CAC HEM sing 228 n n 
C4C NC HEM sing 229 n y 
CMC HMC HEM sing 230 n n 
CMC HMCA HEM sing 231 n n 
CMC HMCB HEM sing 232 n n 
CAC CBC HEM doub 233 n n 
CAC HAC HEM sing 234 n n 
CBC HBC HEM sing 235 n n 
CBC HBCA HEM sing 236 n n 
C1D C2D HEM sing 237 n n 
C1D ND HEM doub 238 n n 
C2D C3D HEM doub 239 n n 
C2D CMD HEM sing 240 n n 
C3D C4D HEM sing 241 n n 
C3D CAD HEM sing 242 n n 
C4D ND HEM sing 243 n n 
CMD HMD HEM sing 244 n n 
CMD HMDA HEM sing 245 n n 
CMD HMDB HEM sing 246 n n 
CAD CBD HEM sing 247 n n 
CAD HAD HEM sing 248 n n 
CAD HADA HEM sing 249 n n 
CBD CGD HEM sing 250 n n 
CBD HBD HEM sing 251 n n 
CBD HBDA HEM sing 252 n n 
CGD O1D HEM doub 253 n n 
CGD O2D HEM sing 254 n n 
O2A H2A HEM sing 255 n n 
O2D H2D HEM sing 256 n n 
FE NA HEM sing 257 n n 
FE NB HEM sing 258 n n 
FE NC HEM sing 259 n n 
FE ND HEM sing 260 n n 
#
_atom_sites.entry_id                     2NNH 
_atom_sites.fract_transf_matrix[1][1]    0.007153 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013595 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 505 505 SO4 SO4 . 
D 3 HEM A 1 500 500 HEM HEM . 
E 4 9CR A 1 501 501 9CR REA . 
F 4 9CR A 1 502 502 9CR REA . 
G 5 PLM A 1 503 503 PLM PLM . 
H 2 SO4 B 1 504 504 SO4 SO4 . 
I 3 HEM B 1 500 500 HEM HEM . 
J 4 9CR B 1 501 501 9CR REA . 
K 4 9CR B 1 502 502 9CR REA . 
L 5 PLM B 1 503 503 PLM PLM . 
M 6 HOH A 1 506 4 HOH HOH . 
M 6 HOH A 2 507 5 HOH HOH . 
M 6 HOH A 3 508 8 HOH HOH . 
M 6 HOH A 4 509 10 HOH HOH . 
M 6 HOH A 5 510 11 HOH HOH . 
M 6 HOH A 6 511 12 HOH HOH . 
M 6 HOH A 7 512 13 HOH HOH . 
M 6 HOH A 8 513 14 HOH HOH . 
M 6 HOH A 9 514 15 HOH HOH . 
M 6 HOH A 10 515 19 HOH HOH . 
M 6 HOH A 11 516 20 HOH HOH . 
M 6 HOH A 12 517 25 HOH HOH . 
M 6 HOH A 13 518 29 HOH HOH . 
M 6 HOH A 14 519 30 HOH HOH . 
M 6 HOH A 15 520 31 HOH HOH . 
M 6 HOH A 16 521 32 HOH HOH . 
M 6 HOH A 17 522 33 HOH HOH . 
M 6 HOH A 18 523 35 HOH HOH . 
M 6 HOH A 19 524 37 HOH HOH . 
M 6 HOH A 20 525 38 HOH HOH . 
M 6 HOH A 21 526 43 HOH HOH . 
M 6 HOH A 22 527 47 HOH HOH . 
M 6 HOH A 23 528 49 HOH HOH . 
M 6 HOH A 24 529 51 HOH HOH . 
M 6 HOH A 25 530 54 HOH HOH . 
M 6 HOH A 26 531 55 HOH HOH . 
M 6 HOH A 27 532 56 HOH HOH . 
M 6 HOH A 28 533 57 HOH HOH . 
M 6 HOH A 29 534 60 HOH HOH . 
M 6 HOH A 30 535 61 HOH HOH . 
M 6 HOH A 31 536 62 HOH HOH . 
M 6 HOH A 32 537 63 HOH HOH . 
M 6 HOH A 33 538 67 HOH HOH . 
M 6 HOH A 34 539 68 HOH HOH . 
M 6 HOH A 35 540 72 HOH HOH . 
M 6 HOH A 36 541 73 HOH HOH . 
M 6 HOH A 37 542 74 HOH HOH . 
M 6 HOH A 38 543 78 HOH HOH . 
M 6 HOH A 39 544 83 HOH HOH . 
M 6 HOH A 40 545 84 HOH HOH . 
M 6 HOH A 41 546 86 HOH HOH . 
M 6 HOH A 42 547 87 HOH HOH . 
M 6 HOH A 43 548 90 HOH HOH . 
M 6 HOH A 44 549 91 HOH HOH . 
N 6 HOH B 1 505 1 HOH HOH . 
N 6 HOH B 2 506 2 HOH HOH . 
N 6 HOH B 3 507 3 HOH HOH . 
N 6 HOH B 4 508 6 HOH HOH . 
N 6 HOH B 5 509 7 HOH HOH . 
N 6 HOH B 6 510 9 HOH HOH . 
N 6 HOH B 7 511 16 HOH HOH . 
N 6 HOH B 8 512 17 HOH HOH . 
N 6 HOH B 9 513 18 HOH HOH . 
N 6 HOH B 10 514 21 HOH HOH . 
N 6 HOH B 11 515 22 HOH HOH . 
N 6 HOH B 12 516 23 HOH HOH . 
N 6 HOH B 13 517 24 HOH HOH . 
N 6 HOH B 14 518 26 HOH HOH . 
N 6 HOH B 15 519 27 HOH HOH . 
N 6 HOH B 16 520 28 HOH HOH . 
N 6 HOH B 17 521 34 HOH HOH . 
N 6 HOH B 18 522 36 HOH HOH . 
N 6 HOH B 19 523 39 HOH HOH . 
N 6 HOH B 20 524 40 HOH HOH . 
N 6 HOH B 21 525 41 HOH HOH . 
N 6 HOH B 22 526 42 HOH HOH . 
N 6 HOH B 23 527 44 HOH HOH . 
N 6 HOH B 24 528 45 HOH HOH . 
N 6 HOH B 25 529 46 HOH HOH . 
N 6 HOH B 26 530 48 HOH HOH . 
N 6 HOH B 27 531 50 HOH HOH . 
N 6 HOH B 28 532 53 HOH HOH . 
N 6 HOH B 29 533 58 HOH HOH . 
N 6 HOH B 30 534 59 HOH HOH . 
N 6 HOH B 31 535 64 HOH HOH . 
N 6 HOH B 32 536 65 HOH HOH . 
N 6 HOH B 33 537 66 HOH HOH . 
N 6 HOH B 34 538 69 HOH HOH . 
N 6 HOH B 35 539 70 HOH HOH . 
N 6 HOH B 36 540 71 HOH HOH . 
N 6 HOH B 37 541 75 HOH HOH . 
N 6 HOH B 38 542 77 HOH HOH . 
N 6 HOH B 39 543 79 HOH HOH . 
N 6 HOH B 40 544 80 HOH HOH . 
N 6 HOH B 41 545 81 HOH HOH . 
N 6 HOH B 42 546 82 HOH HOH . 
N 6 HOH B 43 547 85 HOH HOH . 
N 6 HOH B 44 548 88 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . D 3 23.387 57.906 33.669 1 34.14 ? CHA HEM 500 A 1 
HETATM 2 C CHB HEM . . . D 3 25.687 57.431 29.568 1 30.72 ? CHB HEM 500 A 1 
HETATM 3 C CHC HEM . . . D 3 25.082 52.748 29.843 1 31.21 ? CHC HEM 500 A 1 
HETATM 4 C CHD HEM . . . D 3 23.242 53.259 34.151 1 34.16 ? CHD HEM 500 A 1 
HETATM 5 C C1A HEM . . . D 3 24.088 58.26 32.52 1 35.29 ? C1A HEM 500 A 1 
HETATM 6 C C2A HEM . . . D 3 24.197 59.557 31.984 1 35.07 ? C2A HEM 500 A 1 
HETATM 7 C C3A HEM . . . D 3 24.853 59.419 30.788 1 33.51 ? C3A HEM 500 A 1 
HETATM 8 C C4A HEM . . . D 3 25.115 58.033 30.656 1 33.36 ? C4A HEM 500 A 1 
HETATM 9 C CMA HEM . . . D 3 25.246 60.554 29.76 1 28.99 ? CMA HEM 500 A 1 
HETATM 10 C CAA HEM . . . D 3 23.667 60.818 32.665 1 38.54 ? CAA HEM 500 A 1 
HETATM 11 C CBA HEM . . . D 3 24.633 61.497 33.582 1 41.34 ? CBA HEM 500 A 1 
HETATM 12 C CGA HEM . . . D 3 24.071 62.732 34.242 1 42.84 ? CGA HEM 500 A 1 
HETATM 13 O O1A HEM . . . D 3 24.731 63.768 34.248 1 43.57 ? O1A HEM 500 A 1 
HETATM 14 O O2A HEM . . . D 3 22.966 62.712 34.771 1 42.48 ? O2A HEM 500 A 1 
HETATM 15 C C1B HEM . . . D 3 25.719 56.104 29.168 1 29.97 ? C1B HEM 500 A 1 
HETATM 16 C C2B HEM . . . D 3 26.251 55.608 27.967 1 26.03 ? C2B HEM 500 A 1 
HETATM 17 C C3B HEM . . . D 3 26.048 54.208 28.034 1 27.45 ? C3B HEM 500 A 1 
HETATM 18 C C4B HEM . . . D 3 25.405 53.991 29.285 1 29.77 ? C4B HEM 500 A 1 
HETATM 19 C CMB HEM . . . D 3 26.88 56.463 26.894 1 28.05 ? CMB HEM 500 A 1 
HETATM 20 C CAB HEM . . . D 3 26.383 53.191 27.097 1 25.78 ? CAB HEM 500 A 1 
HETATM 21 C CBB HEM . . . D 3 27.543 53.073 26.186 1 25.35 ? CBB HEM 500 A 1 
HETATM 22 C C1C HEM . . . D 3 24.709 52.388 31.138 1 32.77 ? C1C HEM 500 A 1 
HETATM 23 C C2C HEM . . . D 3 24.513 51.093 31.58 1 31.92 ? C2C HEM 500 A 1 
HETATM 24 C C3C HEM . . . D 3 23.823 51.205 32.813 1 34.93 ? C3C HEM 500 A 1 
HETATM 25 C C4C HEM . . . D 3 23.667 52.597 33.007 1 33.63 ? C4C HEM 500 A 1 
HETATM 26 C CMC HEM . . . D 3 24.97 49.798 30.844 1 30.03 ? CMC HEM 500 A 1 
HETATM 27 C CAC HEM . . . D 3 23.342 50.282 33.726 1 38.18 ? CAC HEM 500 A 1 
HETATM 28 C CBC HEM . . . D 3 23.87 49.048 34.179 1 39.8 ? CBC HEM 500 A 1 
HETATM 29 C C1D HEM . . . D 3 22.928 54.564 34.319 1 34.51 ? C1D HEM 500 A 1 
HETATM 30 C C2D HEM . . . D 3 22.212 55.088 35.409 1 32.75 ? C2D HEM 500 A 1 
HETATM 31 C C3D HEM . . . D 3 22.283 56.447 35.314 1 32.7 ? C3D HEM 500 A 1 
HETATM 32 C C4D HEM . . . D 3 23.049 56.672 34.153 1 33.6 ? C4D HEM 500 A 1 
HETATM 33 C CMD HEM . . . D 3 21.481 54.297 36.511 1 31.35 ? CMD HEM 500 A 1 
HETATM 34 C CAD HEM . . . D 3 21.67 57.534 36.26 1 33.59 ? CAD HEM 500 A 1 
HETATM 35 C CBD HEM . . . D 3 22.666 57.931 37.405 1 35.21 ? CBD HEM 500 A 1 
HETATM 36 C CGD HEM . . . D 3 22.236 59.015 38.427 1 39.34 ? CGD HEM 500 A 1 
HETATM 37 O O1D HEM . . . D 3 21.495 59.934 38.098 1 40.36 ? O1D HEM 500 A 1 
HETATM 38 O O2D HEM . . . D 3 22.665 58.956 39.596 1 40.44 ? O2D HEM 500 A 1 
HETATM 39 N NA HEM . . . D 3 24.659 57.346 31.687 1 33.49 ? NA HEM 500 A 1 
HETATM 40 N NB HEM . . . D 3 25.229 55.126 29.924 1 31.75 ? NB HEM 500 A 1 
HETATM 41 N NC HEM . . . D 3 24.207 53.271 31.985 1 33.14 ? NC HEM 500 A 1 
HETATM 42 N ND HEM . . . D 3 23.41 55.53 33.594 1 33.6 ? ND HEM 500 A 1 
HETATM 43 FE FE HEM . . . D 3 24.392 55.311 31.801 1 32.79 ? FE HEM 500 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           43 
#